Rh2DG005200

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
320266 .. 320610
345 bp
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UTR
Exon/CDS
Intron
Rh2DG005200.1

Sequence Viewer

Length: 345 bp
ATGGAGGAACTAGCATGGGGTCTAAATAATAGTAACTACCACTTCTTGTGGGTAATCAAAGAGTCAGAAAAGGAAAAGCTTCCTATCAATTTTTTTGAGGACATATCAGAGAAGGGCCTTGTTGTGAGTTGGTGCTCCCAACTGCAAGTCCTGGCTCACAAGGCCGTGGGATGCTTTGTTACTCACTGTGGTTGGAATTCGATACTCGAAGCGTTGAACTTGGGAGTACCAATGGTGGCAGTGCCGCAATGGGCAGATCAGACAACGAATGCTAAGTTTGTGGTGGATGTGTGGAAAGTAGGAGTGAGAGTGAAGTTGAATGAGAAAGGCCTGATTACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.91

Weight (kDa)

6.27

Isoelectric Point (pI)

22.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 104 3.2e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Glyco_tran_28_C PF04101 8 - 97 3.7e-08 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 1 cut(s) 228
AgsI TTSAA 2 cut(s) 217, 319
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 137
AoxI GGCC 3 cut(s) 115, 162, 328
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bse3DI GCAATG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 176, 292
BseMI GCAATG 1 cut(s) 254
BshFI GGCC 3 cut(s) 117, 164, 330
BsiHKAI GWGCWC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 3 cut(s) 117, 164, 330
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 245
BspANI GGCC 3 cut(s) 117, 164, 330
BsrDI GCAATG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 176, 292
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BsuRI GGCC 3 cut(s) 117, 164, 330
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 2 cut(s) 176, 292
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 184, 246
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 227
CviAII CATG 1 cut(s) 15
CviJI RGCY 5 cut(s) 79, 117, 155, 164, 330
CviKI_1 RGCY 5 cut(s) 79, 117, 155, 164, 330
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 273
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 18
FaiI YATR 2 cut(s) 16, 104
FatI CATG 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 2 cut(s) 183, 299
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 1 cut(s) 11
GluI GCNGC 1 cut(s) 245
HaeIII GGCC 3 cut(s) 117, 164, 330
Hin1II CATG 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 62
Hpy188I TCNGA 3 cut(s) 67, 109, 261
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 1 cut(s) 18
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 2 cut(s) 137, 164
LweI GCATC 1 cut(s) 161
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 2 cut(s) 32, 178
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 2 cut(s) 88, 196
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 18
PceI AGGCCT 1 cut(s) 330
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspPI GGNCC 1 cut(s) 115
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 137
SetI ASST 1 cut(s) 81
SfaNI GCATC 1 cut(s) 161
Sse9I AATT 2 cut(s) 88, 196
SseBI AGGCCT 1 cut(s) 330
SsiI CCGC 1 cut(s) 245
SspMI CTAG 1 cut(s) 11
StuI AGGCCT 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 200, 207
TasI AATT 2 cut(s) 88, 196
TauI GCSGC 1 cut(s) 247
TscAI CASTG 2 cut(s) 191, 246
TspRI CASTG 2 cut(s) 191, 246
XapI RAATTY 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.