RLG00000015643

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001004
Physical Location & Seq
Forward (+)
350236 .. 352303
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015643

Sequence Viewer

Length: 1467 bp
ATGGAGAAAAGATCACAAATGCAAATAGGTGGTGCTCACGTGCTAGTGTTTCCTTATCCAGTTCAGGGCCACATTTGCCCGATGGTTGAGTTCTCCAAACGCCTTGCCTCAAAGGGTGTTAGGGTCACCGTAATCATCACAACCGTCTCTGCAGCCACCAAGTCCATGAAGCAACTACTGGCAGCTCAGCCCAAAAACACCTCTTTCAGGATCGAGCTCATTTCTGACGGCTCCGAACACCTCCAAAAGTCGGAAACTGCTGAAGAATACCTCGACCGTTTCAGAAGTGTCACTACGCAAAATCTATCCAACCTCATCACCAACATTAAGAACAAGAGTGCTACTCATGCCTTCGTCAACAATGATAGTAGTGATGAAGATGACGACGACTACCCCCTCAAGTGCATCGTTTACCACTCGGGCATGCCCTGGGTGTTAGACGTAGCGCGACAACATGGCATGGATGGAGCTCCATTTTTTACTTGTTCGTCTGCGGTCACTGCCATCTTTCATCACTTCTATGAGGGAGTGTTAAAGATTCCTTCAAAAGATGCTGCAGCTAGAGCATCTAGTACCACAATGCTAATGTCTTCCATGCCCGCACCCCTAGGGTTGAATGATCTACCATCGTTTCTCTCTGATGTTGATGCCTACCCAACTTATCTTAAACTTACCATGAATCAGTTCTCCAATATTGGAGAAGTTAAATGGATCTTCTATAGCACTTTTGAGAAGTTGGAGGACAAGGTAGTTAAATGGATGGCAAGTCAGGACTGGCCCGTGAAAACAATAGGACCAACAATTCCCTCAACGTTTTTGGACAAACGTTTGGAAGATAAGAAAGAGTATAGTCTTAGCCTGTTCAAGCCTGATGTGGAGACTTGCATGAAGTGGCTAGACTCCAAGGGAGCTGGCTCGGTGGTCTATGTATCATTTGGAAGCTTGGCCAACCTAACAAAGAGGCAAATGGAGGAACTAGCACGGGGTCTAAATAATAGTAACTACCACTTCTTGTGGGTAATCAAAGAGTCAGAAAAGGAAAAGCTTCCTATCAATTTTTTCGAGGAGATATCAGAGAAGGGCCTTGTTGTGAGTTGGTGCTCCCAACTGCAAGTCCTGGCTCACAAGGCCGTGGGATGCTTTGTTACTCACTGTGGTTGGAATTCGATACTCGAAGCGTTGAGCTTGGGAGTACCAATGGTGGCAGTGCCACAATGGGCAGATCAGACAACGAATGCTAAGTTTGTGGTGGATGTGTGGAAAGTAGGAGTGAGAGTGAAGTTGAATGAGAAAGGCCTGATTACAAAAGAAGAATTGGTAATGCGTGTTAGGCAGGTCATGGACAAAGAGATGGGAATGGAGATTATAAAGGCTTCGAAAATTTGGAAGGAGTTGGCTAGAGAGGCTGTGGATCAAGGAGGAAGTTCGGATAACAACATTGAGGACTTTGTGGCACAACTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

489

Amino Acids

54.81

Weight (kDa)

6.44

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 13 - 466 3.5e-31 UDP-glucoronosyl and UDP-glucosyl transferase
Glyco_tran_28_C PF04101 318 - 450 3.6e-08 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1367
Acc36I ACCTGC 1 cut(s) 1324
AccII CGCG 1 cut(s) 448
AciI CCGC 2 cut(s) 494, 600
AclI AACGTT 2 cut(s) 812, 826
AclWI GGATC 3 cut(s) 218, 719, 1419
AcoI YGGCCR 1 cut(s) 945
AcsI RAATTY 2 cut(s) 1162, 1380
AcuI CTGAAG 1 cut(s) 282
AcvI CACGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 574, 1194
AfiI CCNNNNNNNGG 3 cut(s) 65, 207, 250
AgsI TTSAA 4 cut(s) 546, 616, 865, 1285
AjnI CCWGG 2 cut(s) 428, 1116
AluBI AGCT 8 cut(s) 185, 217, 470, 560, 911, 942, 1045, 1185
AluI AGCT 8 cut(s) 185, 217, 470, 560, 911, 942, 1045, 1185
Alw21I GWGCWC 4 cut(s) 37, 219, 472, 1103
Alw26I GTCTC 2 cut(s) 151, 872
AlwI GGATC 3 cut(s) 218, 719, 1419
Ama87I CYCGRG 1 cut(s) 418
AoxI GGCC 6 cut(s) 67, 776, 945, 1081, 1128, 1294
ApeKI GCWGC 4 cut(s) 152, 182, 554, 557
ApoI RAATTY 2 cut(s) 1162, 1380
Asp700I GAANNNNTTC 2 cut(s) 683, 1044
AspA2I CCTAGG 1 cut(s) 607
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 4 cut(s) 67, 777, 794, 1081
AsuHPI GGTGA 2 cut(s) 118, 310
AsuII TTCGAA 1 cut(s) 1376
AvaI CYCGRG 1 cut(s) 418
AvaII GGWCC 1 cut(s) 794
AvrII CCTAGG 1 cut(s) 607
BalI TGGCCA 1 cut(s) 947
BanII GRGCYC 2 cut(s) 219, 472
BarI GAAGNNNNNNTAC 2 cut(s) 277, 309
BbrPI CACGTG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 582
Bbv12I GWGCWC 4 cut(s) 37, 219, 472, 1103
BbvI GCAGC 4 cut(s) 164, 194, 541, 569
BccI CCATC 6 cut(s) 76, 458, 512, 634, 754, 1345
BceAI ACGGC 2 cut(s) 244, 1115
BciT130I CCWGG 2 cut(s) 430, 1118
BcoDI GTCTC 2 cut(s) 151, 872
BfaI CTAG 7 cut(s) 44, 561, 570, 608, 896, 977, 1398
BfmI CTRYAG 3 cut(s) 150, 555, 718
BfuAI ACCTGC 1 cut(s) 1324
BisI GCNGC 4 cut(s) 153, 183, 555, 558
BlnI CCTAGG 1 cut(s) 607
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 4 cut(s) 154, 184, 556, 559
Bme1390I CCNGG 2 cut(s) 430, 1118
Bme18I GGWCC 1 cut(s) 794
BmeT110I CYCGRG 1 cut(s) 418
BmgT120I GGNCC 4 cut(s) 67, 777, 794, 1081
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 430, 1118
BmsI GCATC 5 cut(s) 414, 541, 575, 637, 1127
BpiI GAAGAC 1 cut(s) 582
BplI GAGNNNNNCTC 2 cut(s) 328, 360
Bpu1102I GCTNAGC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 1376
BpuEI CTTGAG 1 cut(s) 383
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 5 cut(s) 428, 429, 607, 903, 1131
BsaXI ACNNNNNCTCC 2 cut(s) 1260, 1290
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 207, 250
Bse1I ACTGG 3 cut(s) 59, 183, 779
BseBI CCWGG 2 cut(s) 430, 1118
BseDI CCNNGG 5 cut(s) 428, 429, 607, 903, 1131
BseGI GGATG 4 cut(s) 469, 765, 1142, 1258
BseLI CCNNNNNNNGG 3 cut(s) 65, 207, 250
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 3 cut(s) 59, 183, 779
BseRI GAGGAG 1 cut(s) 1079
BseXI GCAGC 4 cut(s) 164, 194, 541, 569
Bsh1236I CGCG 1 cut(s) 448
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 6 cut(s) 69, 778, 947, 1083, 1130, 1296
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 4 cut(s) 37, 219, 472, 1103
BsiHKCI CYCGRG 1 cut(s) 418
BslI CCNNNNNNNGG 3 cut(s) 65, 207, 250
BsmAI GTCTC 2 cut(s) 151, 872
BsmBI CGTCTC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 1240
BsnI GGCC 6 cut(s) 69, 778, 947, 1083, 1130, 1296
BsoBI CYCGRG 1 cut(s) 418
Bsp119I TTCGAA 1 cut(s) 1376
Bsp1286I GDGCHC 4 cut(s) 37, 219, 472, 1103
Bsp143I GATC 6 cut(s) 11, 210, 619, 711, 1222, 1411
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 2 cut(s) 494, 600
BspANI GGCC 6 cut(s) 69, 778, 947, 1083, 1130, 1296
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 232
BspMAI CTGCAG 2 cut(s) 154, 559
BspMI ACCTGC 1 cut(s) 1324
BspPI GGATC 3 cut(s) 218, 719, 1419
BspT104I TTCGAA 1 cut(s) 1376
BsrI ACTGG 3 cut(s) 59, 183, 779
BssECI CCNNGG 5 cut(s) 428, 429, 607, 903, 1131
BssMI GATC 6 cut(s) 11, 210, 619, 711, 1222, 1411
BssT1I CCWWGG 2 cut(s) 607, 903
Bst2UI CCWGG 2 cut(s) 430, 1118
Bst4CI ACNGT 4 cut(s) 130, 145, 278, 1154
BstBAI YACGTR 1 cut(s) 40
BstBI TTCGAA 1 cut(s) 1376
BstC8I GCNNGC 3 cut(s) 425, 600, 913
BstDEI CTNAG 3 cut(s) 186, 854, 1239
BstDSI CCRYGG 1 cut(s) 1131
BstEII GGTNACC 1 cut(s) 124
BstENI CCTNNNNNAGG 1 cut(s) 205
BstF5I GGATG 4 cut(s) 469, 765, 1142, 1258
BstFNI CGCG 1 cut(s) 448
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 6 cut(s) 14, 213, 622, 714, 1225, 1414
BstMAI GTCTC 2 cut(s) 151, 872
BstMBI GATC 6 cut(s) 11, 210, 619, 711, 1222, 1411
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 7 cut(s) 75, 347, 500, 563, 1127, 1330, 1403
BstNI CCWGG 2 cut(s) 430, 1118
BstNSI RCATGY 1 cut(s) 427
BstPI GGTNACC 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 428, 1116
BstSFI CTRYAG 3 cut(s) 150, 555, 718
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 4 cut(s) 164, 194, 541, 569
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 6 cut(s) 69, 778, 947, 1083, 1130, 1296
BtgI CCRYGG 1 cut(s) 1131
BtsCI GGATG 4 cut(s) 469, 765, 1142, 1258
BtsI GCAGTG 2 cut(s) 498, 1212
BtsIMutI CAGTG 3 cut(s) 498, 1150, 1212
BveI ACCTGC 1 cut(s) 1324
Cac8I GCNNGC 3 cut(s) 425, 600, 913
CfoI GCGC 1 cut(s) 448
Cfr13I GGNCC 4 cut(s) 67, 777, 794, 1081
Csp6I GTAC 2 cut(s) 573, 1193
CviAII CATG 9 cut(s) 166, 347, 424, 455, 460, 595, 676, 886, 1339
CviQI GTAC 2 cut(s) 573, 1193
DdeI CTNAG 3 cut(s) 186, 854, 1239
DpnI GATC 6 cut(s) 13, 212, 621, 713, 1224, 1413
DpnII GATC 6 cut(s) 11, 210, 619, 711, 1222, 1411
EaeI YGGCCR 1 cut(s) 945
Ecl136II GAGCTC 2 cut(s) 217, 470
Eco130I CCWWGG 2 cut(s) 607, 903
Eco147I AGGCCT 1 cut(s) 1296
Eco24I GRGCYC 2 cut(s) 219, 472
Eco32I GATATC 1 cut(s) 1071
Eco47I GGWCC 1 cut(s) 794
Eco53kI GAGCTC 2 cut(s) 217, 470
Eco57I CTGAAG 1 cut(s) 282
Eco72I CACGTG 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 418
Eco91I GGTNACC 1 cut(s) 124
EcoICRI GAGCTC 2 cut(s) 217, 470
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 1081
EcoO65I GGTNACC 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 1162
EcoRII CCWGG 2 cut(s) 428, 1116
EcoRV GATATC 1 cut(s) 1071
EcoT14I CCWWGG 2 cut(s) 607, 903
EcoT38I GRGCYC 2 cut(s) 219, 472
ErhI CCWWGG 2 cut(s) 607, 903
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 9 cut(s) 169, 350, 427, 458, 463, 598, 679, 889, 1342
FatI CATG 9 cut(s) 165, 346, 423, 454, 459, 594, 675, 885, 1338
FauI CCCGC 1 cut(s) 607
Fnu4HI GCNGC 4 cut(s) 153, 183, 555, 558
FokI GGATG 4 cut(s) 476, 772, 1149, 1265
FriOI GRGCYC 2 cut(s) 219, 472
Fsp4HI GCNGC 4 cut(s) 153, 183, 555, 558
FspBI CTAG 7 cut(s) 44, 561, 570, 608, 896, 977, 1398
GlaI GCGC 1 cut(s) 447
GluI GCNGC 4 cut(s) 153, 183, 555, 558
HaeIII GGCC 6 cut(s) 69, 778, 947, 1083, 1130, 1296
HhaI GCGC 1 cut(s) 448
Hin1II CATG 9 cut(s) 169, 350, 427, 458, 463, 598, 679, 889, 1342
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 2 cut(s) 940, 1043
HinfI GANTC 4 cut(s) 538, 679, 899, 1028
HphI GGTGA 2 cut(s) 118, 310
Hpy166II GTNNAC 2 cut(s) 358, 412
Hpy188I TCNGA 9 cut(s) 226, 235, 253, 284, 640, 1033, 1075, 1227, 1429
Hpy188III TCNNGA 2 cut(s) 208, 770
Hpy8I GTNNAC 2 cut(s) 358, 412
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 4 cut(s) 361, 552, 1072, 1381
HpyCH4III ACNGT 4 cut(s) 130, 145, 278, 1154
HpyCH4IV ACGT 4 cut(s) 39, 441, 812, 826
HpyCH4V TGCA 6 cut(s) 22, 152, 405, 557, 885, 1111
HpyF10VI GCNNNNNNNGC 7 cut(s) 75, 347, 500, 563, 1127, 1330, 1403
HpyF3I CTNAG 3 cut(s) 186, 854, 1239
HpySE526I ACGT 4 cut(s) 39, 441, 812, 826
Hsp92II CATG 9 cut(s) 169, 350, 427, 458, 463, 598, 679, 889, 1342
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 6 cut(s) 11, 210, 619, 711, 1222, 1411
LmnI GCTCC 5 cut(s) 236, 467, 475, 908, 1106
Lsp1109I GCAGC 4 cut(s) 164, 194, 541, 569
LweI GCATC 5 cut(s) 414, 541, 575, 637, 1127
MaeI CTAG 7 cut(s) 44, 561, 570, 608, 896, 977, 1398
MaeII ACGT 4 cut(s) 39, 441, 812, 826
MaeIII GTNAC 5 cut(s) 124, 289, 496, 998, 1144
MalI GATC 6 cut(s) 13, 212, 621, 713, 1224, 1413
MboI GATC 6 cut(s) 11, 210, 619, 711, 1222, 1411
MboII GAAGA 6 cut(s) 275, 389, 582, 706, 845, 1322
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 4 cut(s) 37, 219, 472, 1103
MlsI TGGCCA 1 cut(s) 947
MluCI AATT 5 cut(s) 801, 1054, 1162, 1313, 1380
MluNI TGGCCA 1 cut(s) 947
MlyI GAGTC 2 cut(s) 893, 1037
MmeI TCCRAC 4 cut(s) 231, 333, 717, 1139
Mox20I TGGCCA 1 cut(s) 947
MroXI GAANNNNTTC 2 cut(s) 683, 1044
MscI TGGCCA 1 cut(s) 947
MseI TTAA 5 cut(s) 327, 533, 666, 705, 753
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 947
MspR9I CCNGG 2 cut(s) 430, 1118
Mva1269I GAATGC 1 cut(s) 1240
MvaI CCWGG 2 cut(s) 430, 1118
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 7 cut(s) 75, 347, 500, 563, 1127, 1330, 1403
NdeII GATC 6 cut(s) 11, 210, 619, 711, 1222, 1411
NlaIII CATG 9 cut(s) 169, 350, 427, 458, 463, 598, 679, 889, 1342
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 3 cut(s) 124, 289, 496
NspI RCATGY 1 cut(s) 427
NspV TTCGAA 1 cut(s) 1376
PaeI GCATGC 1 cut(s) 427
PasI CCCWGGG 1 cut(s) 429
PceI AGGCCT 1 cut(s) 1296
PctI GAATGC 1 cut(s) 1240
PdmI GAANNNNTTC 2 cut(s) 683, 1044
PfeI GAWTC 2 cut(s) 538, 679
PkrI GCNGC 4 cut(s) 154, 184, 556, 559
PleI GAGTC 2 cut(s) 893, 1036
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
PpsI GAGTC 2 cut(s) 893, 1036
Ppu21I YACGTR 1 cut(s) 40
PsiI TTATAA 1 cut(s) 1367
Psp124BI GAGCTC 2 cut(s) 219, 472
Psp1406I AACGTT 2 cut(s) 812, 826
Psp6I CCWGG 2 cut(s) 428, 1116
PspCI CACGTG 1 cut(s) 40
PspEI GGTNACC 1 cut(s) 124
PspGI CCWGG 2 cut(s) 428, 1116
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 4 cut(s) 67, 777, 794, 1081
PstI CTGCAG 2 cut(s) 154, 559
PsuI RGATCY 1 cut(s) 711
RsaI GTAC 2 cut(s) 574, 1194
RsaNI GTAC 2 cut(s) 573, 1193
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 2 cut(s) 219, 472
SaqAI TTAA 5 cut(s) 327, 533, 666, 705, 753
SatI GCNGC 4 cut(s) 153, 183, 555, 558
Sau3AI GATC 6 cut(s) 11, 210, 619, 711, 1222, 1411
Sau96I GGNCC 4 cut(s) 67, 777, 794, 1081
SchI GAGTC 2 cut(s) 893, 1037
ScrFI CCNGG 2 cut(s) 430, 1118
SduI GDGCHC 4 cut(s) 37, 219, 472, 1103
SfaNI GCATC 5 cut(s) 414, 541, 575, 637, 1127
SfcI CTRYAG 3 cut(s) 150, 555, 718
SfuI TTCGAA 1 cut(s) 1376
SinI GGWCC 1 cut(s) 794
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SphI GCATGC 1 cut(s) 427
Sse9I AATT 5 cut(s) 801, 1054, 1162, 1313, 1380
SseBI AGGCCT 1 cut(s) 1296
SsiI CCGC 2 cut(s) 494, 600
SspI AATATT 1 cut(s) 694
SspMI CTAG 7 cut(s) 44, 561, 570, 608, 896, 977, 1398
SstI GAGCTC 2 cut(s) 219, 472
StuI AGGCCT 1 cut(s) 1296
StyD4I CCNGG 2 cut(s) 428, 1116
StyI CCWWGG 2 cut(s) 607, 903
TaaI ACNGT 4 cut(s) 130, 145, 278, 1154
TaiI ACGT 4 cut(s) 42, 444, 815, 829
TaqI TCGA 7 cut(s) 213, 273, 1062, 1166, 1173, 1376, 1462
TasI AATT 5 cut(s) 801, 1054, 1162, 1313, 1380
TfiI GAWTC 2 cut(s) 538, 679
Tru1I TTAA 5 cut(s) 327, 533, 666, 705, 753
Tru9I TTAA 5 cut(s) 327, 533, 666, 705, 753
TscAI CASTG 3 cut(s) 505, 1157, 1212
TseFI GTSAC 3 cut(s) 124, 289, 496
TseI GCWGC 4 cut(s) 152, 182, 554, 557
Tsp45I GTSAC 3 cut(s) 124, 289, 496
TspDTI ATGAA 5 cut(s) 182, 390, 500, 692, 902
TspRI CASTG 3 cut(s) 505, 1157, 1212
VpaK11BI GGWCC 1 cut(s) 794
XagI CCTNNNNNAGG 1 cut(s) 205
XapI RAATTY 2 cut(s) 1162, 1380
XceI RCATGY 1 cut(s) 427
XmaJI CCTAGG 1 cut(s) 607
XmnI GAANNNNTTC 2 cut(s) 683, 1044
XspI CTAG 7 cut(s) 44, 561, 570, 608, 896, 977, 1398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.