Rroxscaffold_5G00354070

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001004
Physical Location & Seq
Forward (+)
32431427 .. 32432083
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354070.1

Sequence Viewer

Length: 657 bp
ATGTTTTTGGACAAAAAGTTGGAGGATGACAAAGACTATGGTCTTAACCTTTTTGAGCCTAATGTGGAGAGCATGAAGTGGCTAGACTCCAAGGAAACAGGTTCAGTCGTTTATGCATCATTTGGAAGTTTAGCTAACCTCACAAAAGAGCAATTTGAAGAACTAGCATGGGGTCTATATAACAGCAACCACAACTTCTTATGGGTAGTCCGACAATCAGAGAAGGAAAAGCTCCCAACAAATTTCAGAGATAGGATAGCGGAGAAGGGTCTTGTGGTGACTTGGTGCACACAGTTACAAGTTTTAGCTCACAAGGCTGTGGGCTGCTTTCTTACTCATTGTGGATGGAATTCGGCTCTCGAAGCATTAAGCTTGGGACTACCAATGGTGGGAATGCCGCACCGGGCCGATCATCCAACTGTTGCTAAATATGTTAAGGATGTGTGGAAAGTCGGAGTTAGGGTAAAGGTGAAGGAGGGCTATGTGACGAAAGAAGAAATAAGTGCATGCATTAGGCAAGTCATGGACACAGACAAAGGGATGGAGTTTAGAAAAGCTGCACTAGTTTGGAAGGAATTGGCTAAAGAGGCAATGGCTGAGGGCGGAAGCTCTGATAAGAACATTGAGGAATTTGTGGCGAAAATGAAGTTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

218

Amino Acids

24.74

Weight (kDa)

6.54

Isoelectric Point (pI)

31.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 30 - 178 7e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 260, 398, 603
AcsI RAATTY 3 cut(s) 241, 349, 629
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 1 cut(s) 158
AhlI ACTAGT 1 cut(s) 562
AluBI AGCT 6 cut(s) 134, 232, 308, 372, 557, 609
AluI AGCT 6 cut(s) 134, 232, 308, 372, 557, 609
Alw21I GWGCWC 1 cut(s) 290
Alw44I GTGCAC 1 cut(s) 286
AoxI GGCC 1 cut(s) 405
ApaLI GTGCAC 1 cut(s) 286
ApeKI GCWGC 2 cut(s) 324, 557
ApoI RAATTY 3 cut(s) 241, 349, 629
AspS9I GGNCC 1 cut(s) 405
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 289, 481
BaeGI GKGCMC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 311, 544
BccI CCATC 2 cut(s) 339, 535
BcnI CCSGG 1 cut(s) 404
BcuI ACTAGT 1 cut(s) 562
BfaI CTAG 3 cut(s) 83, 164, 563
BisI GCNGC 3 cut(s) 325, 398, 558
BlsI GCNGC 3 cut(s) 326, 399, 559
Bme1390I CCNGG 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 405
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 125
BoxI GACNNNNGTC 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 597
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 5 cut(s) 31, 350, 412, 445, 546
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 1 cut(s) 588
BseSI GKGCMC 1 cut(s) 290
BseXI GCAGC 2 cut(s) 311, 544
BsgI GTGCAG 1 cut(s) 543
BshFI GGCC 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 290
BsiSI CCGG 1 cut(s) 403
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 390
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 409
BspACI CCGC 3 cut(s) 260, 398, 603
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 597
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 294, 421
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 1 cut(s) 597
BstF5I GGATG 5 cut(s) 31, 350, 412, 445, 546
BstKTI GATC 1 cut(s) 412
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 3 cut(s) 314, 362, 587
BstNSI RCATGY 1 cut(s) 510
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 402
BstSLI GKGCMC 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 311, 544
BsuRI GGCC 1 cut(s) 407
BtsCI GGATG 5 cut(s) 31, 350, 412, 445, 546
Cac8I GCNNGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 405
CviAII CATG 4 cut(s) 73, 168, 507, 523
DdeI CTNAG 1 cut(s) 597
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
EciI GGCGGA 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 90
EcoT22I ATGCAT 2 cut(s) 118, 512
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 4 cut(s) 76, 171, 510, 526
FaqI GGGAC 1 cut(s) 390
FatI CATG 4 cut(s) 72, 167, 506, 522
Fnu4HI GCNGC 3 cut(s) 325, 398, 558
FokI GGATG 5 cut(s) 38, 357, 399, 452, 553
Fsp4HI GCNGC 3 cut(s) 325, 398, 558
FspBI CTAG 3 cut(s) 83, 164, 563
GluI GCNGC 3 cut(s) 325, 398, 558
HaeIII GGCC 1 cut(s) 407
HapII CCGG 1 cut(s) 403
Hin1II CATG 4 cut(s) 76, 171, 510, 526
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 1 cut(s) 370
HinfI GANTC 1 cut(s) 86
HpaI GTTAAC 1 cut(s) 651
HpaII CCGG 1 cut(s) 403
HphI GGTGA 2 cut(s) 289, 481
Hpy166II GTNNAC 2 cut(s) 288, 651
Hpy188I TCNGA 5 cut(s) 212, 220, 248, 455, 613
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 2 cut(s) 288, 651
HpyAV CCTTC 4 cut(s) 217, 259, 466, 565
HpyCH4III ACNGT 2 cut(s) 294, 421
HpyCH4V TGCA 5 cut(s) 116, 288, 506, 510, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 362, 587
HpyF3I CTNAG 1 cut(s) 597
Hsp92II CATG 4 cut(s) 76, 171, 510, 526
KspAI GTTAAC 1 cut(s) 651
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 2 cut(s) 84, 416
Lsp1109I GCAGC 2 cut(s) 311, 544
LweI GCATC 1 cut(s) 125
MaeI CTAG 3 cut(s) 83, 164, 563
MaeIII GTNAC 3 cut(s) 277, 294, 484
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 2 cut(s) 170, 506
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 5 cut(s) 152, 241, 349, 575, 629
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 3 cut(s) 235, 433, 440
MnlI CCTC 6 cut(s) 16, 149, 469, 580, 592, 619
Mph1103I ATGCAT 2 cut(s) 118, 512
MseI TTAA 5 cut(s) 45, 368, 435, 650, 655
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 1 cut(s) 404
Mva1269I GAATGC 1 cut(s) 399
MwoI GCNNNNNNNGC 3 cut(s) 314, 362, 587
NciI CCSGG 1 cut(s) 404
NdeII GATC 1 cut(s) 409
NlaIII CATG 4 cut(s) 76, 171, 510, 526
NmuCI GTSAC 2 cut(s) 277, 484
NsiI ATGCAT 2 cut(s) 118, 512
NspI RCATGY 1 cut(s) 510
PaeI GCATGC 1 cut(s) 510
PctI GAATGC 1 cut(s) 399
PkrI GCNGC 3 cut(s) 326, 399, 559
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PshAI GACNNNNGTC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 405
SaqAI TTAA 5 cut(s) 45, 368, 435, 650, 655
SatI GCNGC 3 cut(s) 325, 398, 558
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 1 cut(s) 405
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 1 cut(s) 125
SpeI ACTAGT 1 cut(s) 562
SphI GCATGC 1 cut(s) 510
Sse9I AATT 5 cut(s) 152, 241, 349, 575, 629
SsiI CCGC 3 cut(s) 260, 398, 603
SspMI CTAG 3 cut(s) 83, 164, 563
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 294, 421
TaqI TCGA 1 cut(s) 360
TasI AATT 5 cut(s) 152, 241, 349, 575, 629
TauI GCSGC 1 cut(s) 400
Tru1I TTAA 5 cut(s) 45, 368, 435, 650, 655
Tru9I TTAA 5 cut(s) 45, 368, 435, 650, 655
TseFI GTSAC 2 cut(s) 277, 484
TseI GCWGC 2 cut(s) 324, 557
Tsp45I GTSAC 2 cut(s) 277, 484
TspDTI ATGAA 1 cut(s) 89
VneI GTGCAC 1 cut(s) 286
XapI RAATTY 3 cut(s) 241, 349, 629
XceI RCATGY 1 cut(s) 510
XspI CTAG 3 cut(s) 83, 164, 563
Zsp2I ATGCAT 2 cut(s) 118, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.