Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001004

Physical Location & Seq

Genomic Coordinates Reverse (-)

55076937 .. 55077560

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0456600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTTCATCGTCTGAGGAACCACCACAGCAGCCACAGTCAGTGAAGGACTGTCTTTACAAGACCAAGCTCATTCAATTCTTGGACCGCACTGCCCCTATCGTCCTCCAGAACGACAATGGCCCCTGCCCTCTCCTCGCCATCTGTAATGTTCTCTCCCTGAGAAACAACCTGAACTTGAGTGCAGACACTACAGAAGTCTCTCAAGAAAAGTTACTCACACTCGTTGCTGAAAGATTAATTGATTCTATTGATAATAAAGATGCTGTTGCCGATGCTATCGATCTACTCCCTCGCCTTGCAACCGGAATCAACGTCAACATAAAATTCACAAGGATAAGTGATTTTGAGTCTACTCCAGAACGTGTAATATTTGATCTGCTAGACATCCCACTATATCATGGCTGGATAGTTGATCCCGTGCTAAATGAGACTGCTAATGCAATTGGGTCCAAGTCCTATAATACTCTTATGGGGGAGCTTGTTGCACTGGAAACACAAAATATGACTGCAACACTCGGTGTGCCTTCCCCAAGCCTTTCTAAAACTAGATCTTTTGTTAAGTCTCTACATTCAGCTTCTTCTGATGAACCAAAGGTAATTAAAGCAGGAGACCGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

207

Amino Acids

22.67

Weight (kDa)

4.86

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MINDY_DUB	PF04424	20 - 169	2.1e-48	MINDY deubiquitinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001004)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00390 FvH4_1g00400 FvH4_1g00410 FvH4_1g00420 FvH4_4g11960 FvH4_4g11970
rosa_chinensis	RchiOBHm_Chr2g0084821 RchiOBHm_Chr2g0084831 RchiOBHm_Chr2g0084841 RchiOBHm_Chr2g0084851 RchiOBHm_Chr2g0084901 RchiOBHm_Chr4g0409581 RchiOBHm_Chr4g0409591
rosa_laevigata	RLG00000008551 RLG00000008554 RLG00000015643 RLG00000015645 RLG00000015646 RLG00000015647
rosa_multiflora	Rmu_co8221948.1_g000001 Rmu_sc0001616.1_g000004 Rmu_sc0008771.1_g000006 Rmu_sc0020268.1_g000001 Rmu_sc0023282.1_g000002 Rmu_sc0029001.1_g000001 Rmu_ssc0000436.1_g000005 Rmu_ssc0000436.1_g000007 Rmu_ssc0000436.1_g000009 Rmu_ssc0000436.1_g000012
rosa_roxburghii	Rroxscaffold_2G00155720 Rroxscaffold_2G00155760 Rroxscaffold_2G00155780 Rroxscaffold_2G00155790 Rroxscaffold_5G00354040 Rroxscaffold_5G00354070
rosa_rugosa	Rorug01G0456600 Rorug01G0456800 Rorug01G0456900 Rorug04G0094700 Rorug04G0094900
rosa_samantha	Rh2AG003900 Rh2AG004200 Rh2BG005400 Rh2BG005600 Rh2BG005700 Rh2BG005800 Rh2CG005900 Rh2DG005100 Rh2DG005200 Rh2DG005300 Rh2DG005700 Rh2DG005900 Rh4AG156800 Rh4AG156900 Rh4CG166300 Rh4DG150100
rosa_wichuraiana	Rw2G000420 Rw2G000430 Rw2G000440 Rw2G000450 Rw4G012920 Rw4G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	353
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	521
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	1 cut(s)	77
AluBI	AGCT	3 cut(s)	70, 481, 578
AluI	AGCT	3 cut(s)	70, 481, 578
Alw26I	GTCTC	4 cut(s)	205, 425, 570, 606
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	326
AseI	ATTAAT	1 cut(s)	239
AspS9I	GGNCC	3 cut(s)	85, 122, 450
AvaII	GGWCC	2 cut(s)	85, 450
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	149
BcoDI	GTCTC	4 cut(s)	205, 425, 570, 606
BfaI	CTAG	2 cut(s)	383, 549
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	551
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme18I	GGWCC	2 cut(s)	85, 450
BmgT120I	GGNCC	3 cut(s)	85, 122, 450
BmiI	GGNNCC	3 cut(s)	21, 124, 451
BmsI	GCATC	2 cut(s)	253, 265
BpmI	CTGGAG	2 cut(s)	92, 342
BpuEI	CTTGAG	2 cut(s)	189, 199
Bsa29I	ATCGAT	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	606
BsaWI	WCCGGW	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	282
BseGI	GGATG	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	6, 152
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	306
BsmAI	GTCTC	4 cut(s)	205, 425, 570, 606
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	283, 376, 415, 551
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	7, 153
BspDI	ATCGAT	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	21, 124, 451
BspPI	GGATC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	495
BssMI	GATC	4 cut(s)	283, 376, 415, 551
Bst4CI	ACNGT	3 cut(s)	39, 53, 617
BstDEI	CTNAG	2 cut(s)	15, 161
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	4 cut(s)	286, 379, 418, 554
BstMAI	GTCTC	4 cut(s)	205, 425, 570, 606
BstMBI	GATC	4 cut(s)	283, 376, 415, 551
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	48, 90, 488
Cfr13I	GGNCC	3 cut(s)	85, 122, 450
ClaI	ATCGAT	1 cut(s)	282
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	8 cut(s)	5, 34, 70, 123, 405, 481, 537, 578
CviKI_1	RGCY	8 cut(s)	5, 34, 70, 123, 405, 481, 537, 578
DdeI	CTNAG	2 cut(s)	15, 161
DpnI	GATC	4 cut(s)	285, 378, 417, 553
DpnII	GATC	4 cut(s)	283, 376, 415, 551
DraIII	CACNNNGTG	1 cut(s)	521
Eco31I	GGTCTC	1 cut(s)	606
Eco47I	GGWCC	2 cut(s)	85, 450
FaeI	CATG	1 cut(s)	404
FaiI	YATR	6 cut(s)	323, 397, 402, 462, 473, 506
FatI	CATG	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	2 cut(s)	383, 549
GluI	GCNGC	1 cut(s)	32
GsuI	CTGGAG	2 cut(s)	92, 342
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	1 cut(s)	404
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	245, 309, 350
HpaII	CCGG	1 cut(s)	306
Hpy166II	GTNNAC	2 cut(s)	319, 354
Hpy188I	TCNGA	2 cut(s)	16, 586
Hpy188III	TCNNGA	3 cut(s)	109, 206, 359
Hpy8I	GTNNAC	2 cut(s)	319, 354
HpyAV	CCTTC	2 cut(s)	40, 537
HpyCH4III	ACNGT	3 cut(s)	39, 53, 617
HpyCH4IV	ACGT	2 cut(s)	315, 364
HpyCH4V	TGCA	5 cut(s)	185, 302, 443, 488, 512
HpyF3I	CTNAG	2 cut(s)	15, 161
HpySE526I	ACGT	2 cut(s)	315, 364
Hsp92II	CATG	1 cut(s)	404
Kzo9I	GATC	4 cut(s)	283, 376, 415, 551
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	9 cut(s)	122, 139, 173, 185, 319, 372, 391, 476, 594
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	2 cut(s)	253, 265
MaeI	CTAG	2 cut(s)	383, 549
MaeII	ACGT	2 cut(s)	315, 364
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	4 cut(s)	285, 378, 417, 553
MboI	GATC	4 cut(s)	283, 376, 415, 551
MboII	GAAGA	1 cut(s)	573
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	1 cut(s)	551
MluCI	AATT	5 cut(s)	77, 240, 326, 444, 600
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	5 cut(s)	10, 116, 141, 146, 303
MseI	TTAA	3 cut(s)	239, 561, 603
MspI	CCGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	444
NdeII	GATC	4 cut(s)	283, 376, 415, 551
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	3 cut(s)	21, 124, 451
PfeI	GAWTC	2 cut(s)	245, 309
PkrI	GCNGC	1 cut(s)	33
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PshBI	ATTAAT	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	21, 124, 451
PspPI	GGNCC	3 cut(s)	85, 122, 450
PsuI	RGATCY	1 cut(s)	551
SaqAI	TTAA	3 cut(s)	239, 561, 603
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	4 cut(s)	283, 376, 415, 551
Sau96I	GGNCC	3 cut(s)	85, 122, 450
SchI	GAGTC	1 cut(s)	359
SetI	ASST	7 cut(s)	72, 174, 318, 367, 483, 580, 600
SfaNI	GCATC	2 cut(s)	253, 265
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	85, 450
SmlI	CTYRAG	2 cut(s)	178, 204
SmoI	CTYRAG	2 cut(s)	178, 204
Sse9I	AATT	5 cut(s)	77, 240, 326, 444, 600
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	2 cut(s)	383, 549
TaaI	ACNGT	3 cut(s)	39, 53, 617
TaiI	ACGT	2 cut(s)	318, 367
TaqI	TCGA	1 cut(s)	282
TasI	AATT	5 cut(s)	77, 240, 326, 444, 600
TfiI	GAWTC	2 cut(s)	245, 309
Tru1I	TTAA	3 cut(s)	239, 561, 603
Tru9I	TTAA	3 cut(s)	239, 561, 603
TscAI	CASTG	3 cut(s)	48, 97, 495
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	603
TspRI	CASTG	3 cut(s)	48, 97, 495
VpaK11BI	GGWCC	2 cut(s)	85, 450
VspI	ATTAAT	1 cut(s)	239
XapI	RAATTY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	353
XspI	CTAG	2 cut(s)	383, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.