Rmu_sc0023282.1_g000002

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023282.1
OG0001004
Physical Location & Seq
Forward (+)
2812 .. 3474
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023282.1_g000002.1.cds

Sequence Viewer

Length: 663 bp
atgtttttggacaaacggttggaggatgacaaggaatatagcctcagtatgttcaaacctaatgtggagacttgtatggagtggctagactctagagaatctagctccgtcgtttatgcatcatttggaagcttggccaatctcaaaaaggagcagatagaggagctagcatggggactgagggatatgaactacaacttcatgtgggcagttagagaatcagaaatggaaaaacttcctggtaatttcttagaggagacatcagagaagggtttggttgtgaactggtgccctcagctacaagttttggctcacaaagctgtgcgatgctttgttactcattgcggatggaattccgttctcgaagcattgagctttggagtaccgatggtgacaatgccacattgggctgatcaagcaactaatgccaaatttgttgaggatgtatggaaagcaggagtcagagtgaagaagaatgagaagggtattgctacaaaacaagaaatagcaaagtgtattaagcaagttatggaagaggagaaagggttgaagatgagaaaagcttcattaaggtggaaagaactagctaaagaggcagtcgatgaagggggtagttctgataagaacattgaagaatttgttgcagaagttaagttaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

220

Amino Acids

25.24

Weight (kDa)

5.46

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 288
AciI CCGC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 3 cut(s) 352, 431, 635
AfaI GTAC 1 cut(s) 384
AgsI TTSAA 3 cut(s) 55, 550, 632
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 8 cut(s) 105, 132, 166, 298, 320, 375, 563, 587
AluI AGCT 8 cut(s) 105, 132, 166, 298, 320, 375, 563, 587
Alw26I GTCTC 2 cut(s) 62, 251
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 3 cut(s) 352, 431, 635
Asp700I GAANNNNTTC 2 cut(s) 234, 562
AsuHPI GGTGA 1 cut(s) 403
AsuNHI GCTAGC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 137
BanI GGYRCC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 294
BccI CCATC 2 cut(s) 342, 382
BciT130I CCWGG 1 cut(s) 240
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 62, 251
BfaI CTAG 5 cut(s) 86, 93, 102, 167, 584
Bme1390I CCNGG 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 2 cut(s) 128, 317
BmtI GCTAGC 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 294
BsaXI ACNNNNNCTCC 4 cut(s) 450, 480, 530, 560
Bse1I ACTGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 340
BseBI CCWGG 1 cut(s) 240
BseGI GGATG 3 cut(s) 31, 353, 448
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 3 cut(s) 58, 170, 308
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 3 cut(s) 176, 269, 551
BseSI GKGCMC 1 cut(s) 293
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 189
BsmAI GTCTC 2 cut(s) 62, 251
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 1 cut(s) 412
BspACI CCGC 1 cut(s) 345
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 3 cut(s) 57, 171, 307
BspLI GGNNCC 1 cut(s) 290
BspOI GCTAGC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 340
BsrI ACTGG 1 cut(s) 290
BssMI GATC 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 528
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 4 cut(s) 44, 179, 250, 294
BstF5I GGATG 3 cut(s) 31, 353, 448
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 2 cut(s) 62, 251
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 4 cut(s) 317, 416, 425, 593
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 137
BtgZI GCGATG 1 cut(s) 340
BtsCI GGATG 3 cut(s) 31, 353, 448
Cac8I GCNNGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 383
CviAII CATG 2 cut(s) 171, 202
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 4 cut(s) 44, 179, 250, 294
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 121
FaeI CATG 2 cut(s) 174, 205
FaiI YATR 9 cut(s) 39, 50, 77, 117, 172, 188, 203, 448, 530
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 170, 201
FbaI TGATCA 1 cut(s) 412
FokI GGATG 3 cut(s) 38, 360, 455
FspBI CTAG 5 cut(s) 86, 93, 102, 167, 584
HaeIII GGCC 1 cut(s) 137
Hin1II CATG 2 cut(s) 174, 205
HindIII AAGCTT 2 cut(s) 130, 561
HinfI GANTC 4 cut(s) 89, 98, 218, 459
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 4 cut(s) 223, 265, 464, 619
Hpy188III TCNNGA 2 cut(s) 93, 362
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 262, 475, 599
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 119, 644
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 416, 425, 593
HpyF3I CTNAG 4 cut(s) 44, 179, 250, 294
Hsp92II CATG 2 cut(s) 174, 205
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 1 cut(s) 412
LmnI GCTCC 3 cut(s) 110, 151, 163
LpnPI CCDG 4 cut(s) 225, 252, 271, 441
LweI GCATC 2 cut(s) 128, 317
MaeI CTAG 5 cut(s) 86, 93, 102, 167, 584
MaeIII GTNAC 2 cut(s) 334, 391
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 5 cut(s) 481, 484, 545, 562, 644
MhlI GDGCHC 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 5 cut(s) 244, 352, 431, 635, 657
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 2 cut(s) 83, 468
MnlI CCTC 9 cut(s) 16, 53, 154, 174, 247, 303, 433, 529, 586
Mox20I TGGCCA 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 121
MroXI GAANNNNTTC 2 cut(s) 234, 562
MscI TGGCCA 1 cut(s) 137
MseI TTAA 4 cut(s) 519, 569, 651, 656
MslI CAYNNNNRTG 1 cut(s) 571
Msp20I TGGCCA 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 4 cut(s) 317, 416, 425, 593
NdeII GATC 1 cut(s) 412
NheI GCTAGC 1 cut(s) 166
NlaIII CATG 2 cut(s) 174, 205
NlaIV GGNNCC 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 391
NsiI ATGCAT 1 cut(s) 121
PdmI GAANNNNTTC 2 cut(s) 234, 562
PfeI GAWTC 2 cut(s) 98, 218
PleI GAGTC 2 cut(s) 83, 467
PpsI GAGTC 2 cut(s) 83, 467
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 290
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
RseI CAYNNNNRTG 1 cut(s) 571
SaqAI TTAA 4 cut(s) 519, 569, 651, 656
Sau3AI GATC 1 cut(s) 412
SchI GAGTC 2 cut(s) 83, 468
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 293
SfaNI GCATC 2 cut(s) 128, 317
SmiMI CAYNNNNRTG 1 cut(s) 571
Sse9I AATT 5 cut(s) 244, 352, 431, 635, 657
SsiI CCGC 1 cut(s) 345
SspMI CTAG 5 cut(s) 86, 93, 102, 167, 584
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 363, 600
TasI AATT 5 cut(s) 244, 352, 431, 635, 657
TfiI GAWTC 2 cut(s) 98, 218
Tru1I TTAA 4 cut(s) 519, 569, 651, 656
Tru9I TTAA 4 cut(s) 519, 569, 651, 656
TseFI GTSAC 1 cut(s) 391
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 4 cut(s) 190, 203, 555, 618
TspGWI ACGGA 2 cut(s) 97, 346
XapI RAATTY 3 cut(s) 352, 431, 635
XbaI TCTAGA 1 cut(s) 92
XmnI GAANNNNTTC 2 cut(s) 234, 562
XspI CTAG 5 cut(s) 86, 93, 102, 167, 584
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.