RchiOBHm_Chr2g0084831

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001004
Physical Location & Seq
Forward (+)
468188 .. 474689
6502 bp
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UTR
Exon/CDS
Intron
PRQ46040

Sequence Viewer

Length: 390 bp
ATGAAGTGGCTAGACTCCAAGGAAGCTGGCTCGGTGGTCTATGTATCATTTGGAAGCTTGGCCAACCTAAAAAAGGAGAAAATGGAGGAACTAGCATGGGGTCTAAATAATAGTAACTACCACTTCTTGTGGGTAATCAAAGAGTCAGAAAAGGAAAAGCTTCCTATCAATTTTTTCGAGGAGATATCAGAGAAGGGCCTTGTTGTGAGTTGGTGCTCCCAACTGCAAGTCCTGGCTCACAAGGCCGTGGGATGCTTTGTTACTCACTGTGGTTGGAATTCGATACTCGAGGCGTTGAGCTTGGGAGTACCAATGGTGGCAGTGCCGCAATGGGCAGATCAGACAACGAATGCTAATACATTATTACATTGCCAAAATAGTTGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

6.06

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 9 - 122 5e-26 UDP-glucoronosyl and UDP-glucosyl transferase
Glyco_tran_28_C PF04101 26 - 121 1.9e-07 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 326
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 277
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 73
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 4 cut(s) 26, 57, 160, 300
AluI AGCT 4 cut(s) 26, 57, 160, 300
Alw21I GWGCWC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 3 cut(s) 60, 196, 243
ApoI RAATTY 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 287
BalI TGGCCA 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 233
BfaI CTAG 2 cut(s) 11, 92
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
Bme1390I CCNGG 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 18, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse3DI GCAATG 2 cut(s) 335, 367
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 2 cut(s) 18, 246
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 2 cut(s) 335, 367
BseRI GAGGAG 1 cut(s) 194
BshFI GGCC 3 cut(s) 62, 198, 245
BsiHKAI GWGCWC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 73
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 3 cut(s) 62, 198, 245
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 337
BspACI CCGC 1 cut(s) 326
BspANI GGCC 3 cut(s) 62, 198, 245
BsrDI GCAATG 2 cut(s) 335, 367
BssECI CCNNGG 2 cut(s) 18, 246
BssMI GATC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 28
BstDSI CCRYGG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BsuRI GGCC 3 cut(s) 62, 198, 245
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 265, 327
Cac8I GCNNGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 308
CviAII CATG 1 cut(s) 96
CviQI GTAC 1 cut(s) 308
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 18
Eco32I GATATC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 287
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 231
EcoRV GATATC 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 99
FaiI YATR 2 cut(s) 42, 97
FatI CATG 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 2 cut(s) 11, 92
GluI GCNGC 1 cut(s) 326
HaeIII GGCC 3 cut(s) 62, 198, 245
Hin1II CATG 1 cut(s) 99
HindIII AAGCTT 2 cut(s) 55, 158
HinfI GANTC 2 cut(s) 14, 143
Hpy188I TCNGA 3 cut(s) 148, 190, 342
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 2 cut(s) 226, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 1 cut(s) 99
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 3 cut(s) 12, 218, 245
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 11, 92
MaeIII GTNAC 2 cut(s) 113, 259
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 218
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 169, 277
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 2 cut(s) 8, 152
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 3 cut(s) 79, 172, 283
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 99
PaeR7I CTCGAG 1 cut(s) 287
PctI GAATGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 159
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 2 cut(s) 8, 151
PpsI GAGTC 2 cut(s) 8, 151
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspPI GGNCC 1 cut(s) 196
PspXI VCTCGAGB 1 cut(s) 287
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 2 cut(s) 8, 152
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 218
SetI ASST 5 cut(s) 28, 59, 69, 162, 302
SfaNI GCATC 1 cut(s) 242
Sfr274I CTCGAG 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 169, 277
SsiI CCGC 1 cut(s) 326
SspMI CTAG 2 cut(s) 11, 92
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 3 cut(s) 177, 281, 288
TasI AATT 2 cut(s) 169, 277
TauI GCSGC 1 cut(s) 328
TscAI CASTG 2 cut(s) 272, 327
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 272, 327
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 2 cut(s) 11, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.