Rh2CG005900

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001004
Physical Location & Seq
Reverse (-)
487949 .. 490194
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG005900.1

Sequence Viewer

Length: 819 bp
ATGGAGAGGGAATGTGAAACAATATCTGCTGCTCCACCTGAGATCCTAGTATTCCCATTTCCTGGTCAGGGCCATATGTGCCCAATGGTTCAGTTCTCCAAGCGACTTGCCTCTAAAGGTCTTAGAGTCACAGTCGTTTCAACCATCTCTGCTGCCAAGTCTATTCAGCAAAGTCCGGCCCATGCCCAAGCTTTCCAAGTAGAATTCATTTCGGACGGTTCCAAAGAAGAAAACAAGTCTGAAACTTTGGACGAAGCTATTGAGCGTTTCAAAAAGGCAACTACACAAACTCTAACCGAACTTATCATCAACATCCAGAACAAGAACACCACTACTACTATCTGTACTAGCAATGGTGATCATGCCTCCTCGGTGGAACAGGTTCCACCCAAGCTCAAGCTCAAGCTCCTGATTTACGACTCAGGGATGCCGTGGGTTTTGGATATAGCGCGACAACAAGGCATAGAAGGAGCTCCTTTTTTTACACAGTCATGCGCGATTGCATCCGTCTACTATCACTTCCGTGAAGGGGCATGTAAGATAATTACTACTGCTCCCACCTCTGGTTTAGATGACGACTCAGAAGCTGCTAATCATGGAAGATCATCACCGTCTACCGACACAATATTATTGCCGGCTATGCCACCACTTGGAGTCAATGACTTACCATCTTTTCTATGTGATACTCATTCCTATCCAGTTTTATGTAAACATACCCTGAATCAATTCTCCAATTTCCGGGAAGCAAAATGGCAATTGTACAACACTTTTGATACGTTAGAACATGAGGTAAGTACCAGTACTACTTATGTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

272

Amino Acids

29.96

Weight (kDa)

5.48

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 15 - 66 4.7e-06 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 62, 650
AccI GTMKAC 2 cut(s) 510, 614
AccII CGCG 2 cut(s) 451, 497
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 4 cut(s) 346, 761, 796, 802
AfiI CCNNNNNNNGG 6 cut(s) 62, 68, 529, 563, 650, 738
AgsI TTSAA 2 cut(s) 141, 271
AjnI CCWGG 1 cut(s) 61
AleI CACNNNNGTG 1 cut(s) 522
AluBI AGCT 7 cut(s) 191, 257, 394, 400, 406, 473, 587
AluI AGCT 7 cut(s) 191, 257, 394, 400, 406, 473, 587
Alw21I GWGCWC 1 cut(s) 475
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 2 cut(s) 70, 177
ApeKI GCWGC 3 cut(s) 29, 152, 587
ApoI RAATTY 1 cut(s) 203
Asp700I GAANNNNTTC 2 cut(s) 381, 725
AspLEI GCGC 2 cut(s) 451, 497
AspS9I GGNCC 2 cut(s) 70, 178
AsuC2I CCSGG 1 cut(s) 740
AsuHPI GGTGA 2 cut(s) 368, 600
BaeGI GKGCMC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 3 cut(s) 16, 139, 574
BccI CCATC 2 cut(s) 152, 676
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 1 cut(s) 740
BfaI CTAG 2 cut(s) 47, 348
BisI GCNGC 3 cut(s) 30, 153, 588
BlsI GCNGC 3 cut(s) 31, 154, 589
BmcAI AGTACT 1 cut(s) 802
Bme1390I CCNGG 2 cut(s) 63, 740
BmgT120I GGNCC 2 cut(s) 70, 178
BmiI GGNNCC 2 cut(s) 220, 384
BmrFI CCNGG 2 cut(s) 63, 740
BmsI GCATC 2 cut(s) 417, 512
BpuEI CTTGAG 2 cut(s) 380, 386
BpuMI CCSGG 1 cut(s) 740
BsaJI CCNNGG 2 cut(s) 369, 431
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 6 cut(s) 62, 68, 529, 563, 650, 738
Bse118I RCCGGY 1 cut(s) 634
Bse1I ACTGG 2 cut(s) 698, 798
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 369, 431
BseGI GGATG 3 cut(s) 312, 432, 503
BseLI CCNNNNNNNGG 6 cut(s) 62, 68, 529, 563, 650, 738
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 3 cut(s) 30, 435, 594
BseNI ACTGG 2 cut(s) 698, 798
BseRI GAGGAG 1 cut(s) 358
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 3 cut(s) 16, 139, 574
Bsh1236I CGCG 2 cut(s) 451, 497
BshFI GGCC 2 cut(s) 72, 179
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 3 cut(s) 176, 635, 739
BslI CCNNNNNNNGG 6 cut(s) 62, 68, 529, 563, 650, 738
BsnI GGCC 2 cut(s) 72, 179
Bsp1286I GDGCHC 2 cut(s) 83, 475
Bsp1407I TGTACA 1 cut(s) 759
Bsp143I GATC 3 cut(s) 42, 358, 602
BspANI GGCC 2 cut(s) 72, 179
BspCNI CTCAG 3 cut(s) 31, 434, 593
BspFNI CGCG 2 cut(s) 451, 497
BspLI GGNNCC 2 cut(s) 220, 384
BspPI GGATC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 634
BsrGI TGTACA 1 cut(s) 759
BsrI ACTGG 2 cut(s) 698, 798
BssAI RCCGGY 1 cut(s) 634
BssECI CCNNGG 2 cut(s) 369, 431
BssMI GATC 3 cut(s) 42, 358, 602
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 4 cut(s) 133, 218, 489, 612
BstAUI TGTACA 1 cut(s) 759
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 4 cut(s) 39, 122, 421, 580
BstDSI CCRYGG 1 cut(s) 431
BstF5I GGATG 3 cut(s) 312, 432, 503
BstFNI CGCG 2 cut(s) 451, 497
BstHHI GCGC 2 cut(s) 451, 497
BstKTI GATC 3 cut(s) 45, 361, 605
BstMBI GATC 3 cut(s) 42, 358, 602
BstMWI GCNNNNNNNGC 2 cut(s) 78, 640
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 537
BstSCI CCNGG 2 cut(s) 61, 738
BstSLI GKGCMC 1 cut(s) 83
BstUI CGCG 2 cut(s) 451, 497
BstV1I GCAGC 3 cut(s) 16, 139, 574
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 2 cut(s) 72, 179
BtgI CCRYGG 1 cut(s) 431
BtsCI GGATG 3 cut(s) 312, 432, 503
Cac8I GCNNGC 1 cut(s) 636
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 2 cut(s) 451, 497
Cfr10I RCCGGY 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 70, 178
Csp6I GTAC 4 cut(s) 345, 760, 795, 801
CviAII CATG 6 cut(s) 182, 362, 492, 534, 596, 785
CviQI GTAC 4 cut(s) 345, 760, 795, 801
DdeI CTNAG 4 cut(s) 39, 122, 421, 580
DpnI GATC 3 cut(s) 44, 360, 604
DpnII GATC 3 cut(s) 42, 358, 602
Ecl136II GAGCTC 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 475
Eco53kI GAGCTC 1 cut(s) 473
EcoICRI GAGCTC 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 475
FaeI CATG 6 cut(s) 185, 365, 495, 537, 599, 788
FatI CATG 6 cut(s) 181, 361, 491, 533, 595, 784
FauNDI CATATG 1 cut(s) 75
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 2 cut(s) 510, 614
Fnu4HI GCNGC 3 cut(s) 30, 153, 588
FokI GGATG 3 cut(s) 299, 439, 490
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 3 cut(s) 30, 153, 588
FspBI CTAG 2 cut(s) 47, 348
GlaI GCGC 2 cut(s) 450, 496
GluI GCNGC 3 cut(s) 30, 153, 588
HaeIII GGCC 2 cut(s) 72, 179
HapII CCGG 3 cut(s) 176, 635, 739
HhaI GCGC 2 cut(s) 451, 497
Hin1II CATG 6 cut(s) 185, 365, 495, 537, 599, 788
Hin6I GCGC 2 cut(s) 449, 495
HinP1I GCGC 2 cut(s) 449, 495
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 5 cut(s) 126, 419, 578, 654, 721
HpaII CCGG 3 cut(s) 176, 635, 739
HphI GGTGA 2 cut(s) 368, 600
Hpy166II GTNNAC 3 cut(s) 511, 615, 710
Hpy188I TCNGA 3 cut(s) 214, 241, 583
Hpy188III TCNNGA 2 cut(s) 316, 409
Hpy8I GTNNAC 3 cut(s) 511, 615, 710
HpyAV CCTTC 2 cut(s) 461, 521
HpyCH4III ACNGT 4 cut(s) 133, 218, 489, 612
HpyCH4IV ACGT 1 cut(s) 776
HpyCH4V TGCA 1 cut(s) 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 640
HpyF3I CTNAG 4 cut(s) 39, 122, 421, 580
HpySE526I ACGT 1 cut(s) 776
Hsp92II CATG 6 cut(s) 185, 365, 495, 537, 599, 788
HspAI GCGC 2 cut(s) 449, 495
KroI GCCGGC 1 cut(s) 634
KroNI GCCGGC 1 cut(s) 636
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 3 cut(s) 42, 358, 602
LmnI GCTCC 5 cut(s) 37, 411, 470, 478, 559
Lsp1109I GCAGC 3 cut(s) 16, 139, 574
LweI GCATC 2 cut(s) 417, 512
MaeI CTAG 2 cut(s) 47, 348
MaeII ACGT 1 cut(s) 776
MaeIII GTNAC 1 cut(s) 127
MalI GATC 3 cut(s) 44, 360, 604
MboI GATC 3 cut(s) 42, 358, 602
MboII GAAGA 2 cut(s) 239, 612
MfeI CAATTG 1 cut(s) 755
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 2 cut(s) 83, 475
MluCI AATT 5 cut(s) 203, 543, 725, 733, 755
MlyI GAGTC 4 cut(s) 135, 413, 572, 663
MnlI CCTC 5 cut(s) 121, 376, 379, 571, 781
MroNI GCCGGC 1 cut(s) 634
MroXI GAANNNNTTC 2 cut(s) 381, 725
MslI CAYNNNNRTG 2 cut(s) 490, 522
MspI CCGG 3 cut(s) 176, 635, 739
MspR9I CCNGG 2 cut(s) 63, 740
MunI CAATTG 1 cut(s) 755
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 451, 497
MwoI GCNNNNNNNGC 2 cut(s) 78, 640
NaeI GCCGGC 1 cut(s) 636
NciI CCSGG 1 cut(s) 740
NdeI CATATG 1 cut(s) 75
NdeII GATC 3 cut(s) 42, 358, 602
NgoMIV GCCGGC 1 cut(s) 634
NlaIII CATG 6 cut(s) 185, 365, 495, 537, 599, 788
NlaIV GGNNCC 2 cut(s) 220, 384
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 1 cut(s) 537
OliI CACNNNNGTG 1 cut(s) 522
PdiI GCCGGC 1 cut(s) 636
PdmI GAANNNNTTC 2 cut(s) 381, 725
PfeI GAWTC 1 cut(s) 721
PflMI CCANNNNNTGG 2 cut(s) 62, 650
PfoI TCCNGGA 1 cut(s) 738
PkrI GCNGC 3 cut(s) 31, 154, 589
PleI GAGTC 4 cut(s) 134, 413, 572, 662
PpsI GAGTC 4 cut(s) 134, 413, 572, 662
Psp124BI GAGCTC 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 220, 384
PspPI GGNCC 2 cut(s) 70, 178
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 1 cut(s) 42
RsaI GTAC 4 cut(s) 346, 761, 796, 802
RsaNI GTAC 4 cut(s) 345, 760, 795, 801
RseI CAYNNNNRTG 2 cut(s) 490, 522
SacI GAGCTC 1 cut(s) 475
SatI GCNGC 3 cut(s) 30, 153, 588
Sau3AI GATC 3 cut(s) 42, 358, 602
Sau96I GGNCC 2 cut(s) 70, 178
ScaI AGTACT 1 cut(s) 802
SchI GAGTC 4 cut(s) 135, 413, 572, 663
ScrFI CCNGG 2 cut(s) 63, 740
SduI GDGCHC 2 cut(s) 83, 475
SfaNI GCATC 2 cut(s) 417, 512
SmiMI CAYNNNNRTG 2 cut(s) 490, 522
SmlI CTYRAG 2 cut(s) 395, 401
SmoI CTYRAG 2 cut(s) 395, 401
Sse9I AATT 5 cut(s) 203, 543, 725, 733, 755
SspI AATATT 1 cut(s) 627
SspMI CTAG 2 cut(s) 47, 348
SstI GAGCTC 1 cut(s) 475
StyD4I CCNGG 2 cut(s) 61, 738
TaaI ACNGT 4 cut(s) 133, 218, 489, 612
TaiI ACGT 1 cut(s) 779
TasI AATT 5 cut(s) 203, 543, 725, 733, 755
TatI WGTACW 3 cut(s) 344, 759, 800
TfiI GAWTC 1 cut(s) 721
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 29, 152, 587
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 2 cut(s) 496, 512
Van91I CCANNNNNTGG 2 cut(s) 62, 650
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 537
XmiI GTMKAC 2 cut(s) 510, 614
XmnI GAANNNNTTC 2 cut(s) 381, 725
XspI CTAG 2 cut(s) 47, 348
ZrmI AGTACT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.