Rroxscaffold_2G00155780

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001004
Physical Location & Seq
Forward (+)
92205526 .. 92208062
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155780.1

Sequence Viewer

Length: 1512 bp
ATGAAAATGGAGAGGGAATCACTGCAAATGGGTACCACTGCTCCTCCTCAAACTCCGCAAAGCAGAAGGAGTACAAGTGCTCATGTGCTAGTGTTCCCTTATCCATTTCAAGGCCACATTTGCCCGATGGTTGAATTCTCCAAACGCCTTGCCTCAAAGGGTGTTAGGGTCACCGTCGTGATCACAACCATTTCTGCAGTCACCATGTCCATGAAGCAGTTGCTAGCAGCTCAACCCAAAAATAAGACCTCTTTCAGGGTGGAGATCATCTCTGATGGCTCCGAACACCTTCAAAAGTCGGAAAACAAAGACGAAGTTTTCAATAGGGTAGCTACGCAAAACTTATCCAGCCTCATCTCCAACATCAAGAACAAGAAGGATCACGCCTGGGACAATGATAGTAGTGATGAAGATGAGGATGACTACCCACTCAAGTGCGTCATTTACCACTCAGCCATGCCATGGGTGTTAGACATAGCGCGACAACATGGCATAGATGGAGCTCCATTTTTTACGTGTGCAGCTGCGGTTACTGCCATCTTTCATCATTTCTATGAAGGAGTATTGAAGATTCCTTCAAAAGATGCTGCAGCTAGAACATCTAATACCACAATGCTAATGCCTTCCATGCCTGGACCGCTAGGGTTCAATGATCTACCATCGTTTCTATCTGACGTTGATGCCTACTCAAGTTTTCTTAACTCTACCATGAATCAATTCTCCAATATCGCCGAAGTAAAATGGATCTTCCACAACACTTGCGAGAAGTTGGAGGAACAGGTACTTAAATGGATGGCAAGTCAGGACTGGCCGGTTAAAACAATAGGACCAACAATTCCATCATCGTTTCTGGACAAACGATTGGGGGATGAGAAAGATTATAGTCTGAGCCTGTTCAAGCCTGATCATGTGGAGACTTGCATGAAGTGGCTAGACTCCAAGGAAACTGGCTCGGTGGTTTATGTATCGTTTGGAAGCTTGGCAAACCTAACGAAGGAGCAAATGGAAGAACTAGCATGGGGTTTAAACAATAGCAACTACCACTTCTTGTGGGTAATCAAAGAGTCAGAAAAGCAAAAGCTTCCGATCAATTTCTTCGAGGAGATATCAGAGAAGGGTCTTGTTGTGAGTTGGTGCTCCCAGCTTCGAGTCTTGGCCCACAAGGCCGTGGGGTGCTTTGTTACTCATTGTGGATGGAATTCGACACTTGAGGCATTGAGCTTGGGAGTGCCGATGGTGACATTGCCGCAATTTGCTGATCAAACAACGAATGCTAAGTTTGTTGCAGATGTGTGGAAAGTAGGAGTGAGAGTAAAGTTGAATGAGAAAGGGTTTATAACAAAAGAGGAACTAGAAATGCGTGTTAAGCAGGTTATGGACAAGGAGGTAGGGGTGGAGATTAGAAAGGCTTCACTAATTTGGAAGGAGTTGGCTAAGGAGGCCGTGGATGAAGGAGGAAGTTCGGACAGGAACATTGAGGAGTTTGCGGCACAACTTCGATTATTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

503

Amino Acids

56.61

Weight (kDa)

5.96

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 44 - 463 1.1e-30 UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C PF06722 391 - 462 8.9e-06 Erythromycin biosynthesis protein CIII-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1337
Acc36I ACCTGC 1 cut(s) 1360
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 462
AccII CGCG 1 cut(s) 481
AciI CCGC 5 cut(s) 56, 527, 638, 1247, 1487
AclWI GGATC 2 cut(s) 387, 752
AcoI YGGCCR 1 cut(s) 809
AcsI RAATTY 2 cut(s) 134, 1198
AfaI GTAC 3 cut(s) 34, 73, 783
AfiI CCNNNNNNNGG 4 cut(s) 110, 255, 462, 994
AflIII ACRYGT 1 cut(s) 515
AgsI TTSAA 9 cut(s) 110, 134, 293, 322, 568, 579, 649, 898, 1321
AjnI CCWGG 2 cut(s) 386, 631
AleI CACNNNNGTG 2 cut(s) 176, 433
AluBI AGCT 9 cut(s) 230, 332, 503, 524, 593, 978, 1081, 1144, 1221
AluI AGCT 9 cut(s) 230, 332, 503, 524, 593, 978, 1081, 1144, 1221
Alw21I GWGCWC 3 cut(s) 82, 505, 1139
Alw26I GTCTC 1 cut(s) 908
AlwI GGATC 2 cut(s) 387, 752
AoxI GGCC 5 cut(s) 112, 809, 1155, 1164, 1440
ApeKI GCWGC 5 cut(s) 227, 521, 524, 587, 590
ApoI RAATTY 2 cut(s) 134, 1198
Asp700I GAANNNNTTC 3 cut(s) 288, 716, 1408
Asp718I GGTACC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 3 cut(s) 635, 827, 1156
AsuHPI GGTGA 3 cut(s) 163, 193, 1249
AsuNHI GCTAGC 1 cut(s) 223
AvaII GGWCC 2 cut(s) 635, 827
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 505
Bbv12I GWGCWC 3 cut(s) 82, 505, 1139
BbvI GCAGC 5 cut(s) 239, 511, 533, 574, 602
BccI CCATC 9 cut(s) 121, 269, 491, 545, 667, 787, 847, 1188, 1228
BceAI ACGGC 2 cut(s) 1151, 1427
BciT130I CCWGG 2 cut(s) 388, 633
BclI TGATCA 3 cut(s) 180, 904, 1258
BcoDI GTCTC 1 cut(s) 908
BfaI CTAG 7 cut(s) 89, 224, 594, 641, 932, 1013, 1352
BfmI CTRYAG 2 cut(s) 195, 588
BfuAI ACCTGC 1 cut(s) 1360
BglI GCCNNNNNGGC 1 cut(s) 1163
BisI GCNGC 7 cut(s) 228, 522, 525, 588, 591, 1247, 1488
BlsI GCNGC 7 cut(s) 229, 523, 526, 589, 592, 1248, 1489
Bme1390I CCNGG 2 cut(s) 388, 633
Bme18I GGWCC 2 cut(s) 635, 827
BmgT120I GGNCC 3 cut(s) 635, 827, 1156
BmiI GGNNCC 2 cut(s) 34, 280
BmrFI CCNGG 2 cut(s) 388, 633
BmsI GCATC 2 cut(s) 574, 670
BmtI GCTAGC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 254, 286
Bpu10I CCTNAGC 1 cut(s) 1434
BpuEI CTTGAG 3 cut(s) 416, 673, 1229
BsaAI YACGTR 1 cut(s) 516
BsaBI GATNNNNATC 1 cut(s) 1504
BsaJI CCNNGG 5 cut(s) 387, 461, 939, 1167, 1443
BsaXI ACNNNNNCTCC 8 cut(s) 25, 28, 55, 58, 61, 91, 1296, 1326
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 255, 462, 994
Bse118I RCCGGY 1 cut(s) 811
Bse1I ACTGG 2 cut(s) 812, 952
Bse3DI GCAATG 1 cut(s) 1241
Bse8I GATNNNNATC 1 cut(s) 1504
BseBI CCWGG 2 cut(s) 388, 633
BseDI CCNNGG 5 cut(s) 387, 461, 939, 1167, 1443
BseGI GGATG 5 cut(s) 424, 798, 874, 1199, 1453
BseJI GATNNNNATC 1 cut(s) 1504
BseLI CCNNNNNNNGG 4 cut(s) 110, 255, 462, 994
BseMI GCAATG 1 cut(s) 1241
BseMII CTCAG 2 cut(s) 465, 878
BseNI ACTGG 2 cut(s) 812, 952
BseRI GAGGAG 4 cut(s) 33, 36, 1115, 1493
BseXI GCAGC 5 cut(s) 239, 511, 533, 574, 602
BseYI CCCAGC 1 cut(s) 1140
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 481
BshFI GGCC 5 cut(s) 114, 811, 1157, 1166, 1442
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 3 cut(s) 82, 505, 1139
BsiSI CCGG 1 cut(s) 812
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 4 cut(s) 110, 255, 462, 994
BsmAI GTCTC 1 cut(s) 908
BsmFI GGGAC 1 cut(s) 404
BsmI GAATGC 1 cut(s) 1276
BsnI GGCC 5 cut(s) 114, 811, 1157, 1166, 1442
Bsp1286I GDGCHC 3 cut(s) 82, 505, 1139
Bsp143I GATC 8 cut(s) 180, 264, 379, 652, 744, 904, 1086, 1258
Bsp19I CCATGG 1 cut(s) 461
BspACI CCGC 5 cut(s) 56, 527, 638, 1247, 1487
BspANI GGCC 5 cut(s) 114, 811, 1157, 1166, 1442
BspCNI CTCAG 2 cut(s) 464, 879
BspFNI CGCG 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 34, 280
BspMAI CTGCAG 2 cut(s) 199, 592
BspMI ACCTGC 1 cut(s) 1360
BspOI GCTAGC 1 cut(s) 227
BspPI GGATC 2 cut(s) 387, 752
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 1241
BsrFI RCCGGY 1 cut(s) 811
BsrI ACTGG 2 cut(s) 812, 952
BssAI RCCGGY 1 cut(s) 811
BssECI CCNNGG 5 cut(s) 387, 461, 939, 1167, 1443
BssMI GATC 8 cut(s) 180, 264, 379, 652, 744, 904, 1086, 1258
BssT1I CCWWGG 2 cut(s) 461, 939
Bst2UI CCWGG 2 cut(s) 388, 633
Bst4CI ACNGT 1 cut(s) 175
BstBAI YACGTR 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 4 cut(s) 451, 887, 1275, 1434
BstDSI CCRYGG 3 cut(s) 461, 1167, 1443
BstEII GGTNACC 1 cut(s) 169
BstENI CCTNNNNNAGG 2 cut(s) 253, 992
BstF5I GGATG 5 cut(s) 424, 798, 874, 1199, 1453
BstFNI CGCG 1 cut(s) 481
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 8 cut(s) 183, 267, 382, 655, 747, 907, 1089, 1261
BstMAI GTCTC 1 cut(s) 908
BstMBI GATC 8 cut(s) 180, 264, 379, 652, 744, 904, 1086, 1258
BstMWI GCNNNNNNNGC 7 cut(s) 120, 533, 628, 637, 1163, 1366, 1439
BstNI CCWGG 2 cut(s) 388, 633
BstPI GGTNACC 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 386, 631
BstSFI CTRYAG 2 cut(s) 195, 588
BstUI CGCG 1 cut(s) 481
BstV1I GCAGC 5 cut(s) 239, 511, 533, 574, 602
BstX2I RGATCY 1 cut(s) 744
BstYI RGATCY 1 cut(s) 744
BsuRI GGCC 5 cut(s) 114, 811, 1157, 1166, 1442
BtgI CCRYGG 3 cut(s) 461, 1167, 1443
BtsCI GGATG 5 cut(s) 424, 798, 874, 1199, 1453
BtsI GCAGTG 2 cut(s) 20, 36
BtsIMutI CAGTG 2 cut(s) 20, 36
BveI ACCTGC 1 cut(s) 1360
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 811
Cfr13I GGNCC 3 cut(s) 635, 827, 1156
CseI GACGC 1 cut(s) 427
Csp6I GTAC 3 cut(s) 33, 72, 782
CspCI CAANNNNNGTGG 2 cut(s) 740, 775
CviQI GTAC 3 cut(s) 33, 72, 782
DdeI CTNAG 4 cut(s) 451, 887, 1275, 1434
DpnI GATC 8 cut(s) 182, 266, 381, 654, 746, 906, 1088, 1260
DpnII GATC 8 cut(s) 180, 264, 379, 652, 744, 904, 1086, 1258
DraI TTTAAA 1 cut(s) 1026
EaeI YGGCCR 1 cut(s) 809
Ecl136II GAGCTC 1 cut(s) 503
Eco130I CCWWGG 2 cut(s) 461, 939
Eco24I GRGCYC 1 cut(s) 505
Eco32I GATATC 1 cut(s) 1107
Eco47I GGWCC 2 cut(s) 635, 827
Eco53kI GAGCTC 1 cut(s) 503
Eco91I GGTNACC 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 503
EcoNI CCTNNNNNAGG 2 cut(s) 253, 992
EcoO65I GGTNACC 1 cut(s) 169
EcoRI GAATTC 2 cut(s) 134, 1198
EcoRII CCWGG 2 cut(s) 386, 631
EcoRV GATATC 1 cut(s) 1107
EcoT14I CCWWGG 2 cut(s) 461, 939
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 2 cut(s) 461, 939
FaqI GGGAC 1 cut(s) 404
FbaI TGATCA 3 cut(s) 180, 904, 1258
Fnu4HI GCNGC 7 cut(s) 228, 522, 525, 588, 591, 1247, 1488
FokI GGATG 5 cut(s) 431, 805, 881, 1206, 1460
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 7 cut(s) 228, 522, 525, 588, 591, 1247, 1488
FspBI CTAG 7 cut(s) 89, 224, 594, 641, 932, 1013, 1352
GlaI GCGC 1 cut(s) 480
GluI GCNGC 7 cut(s) 228, 522, 525, 588, 591, 1247, 1488
GsaI CCCAGC 1 cut(s) 1144
HaeIII GGCC 5 cut(s) 114, 811, 1157, 1166, 1442
HapII CCGG 1 cut(s) 812
HgaI GACGC 1 cut(s) 427
HhaI GCGC 1 cut(s) 481
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HindIII AAGCTT 2 cut(s) 976, 1079
HinfI GANTC 6 cut(s) 17, 571, 712, 935, 1064, 1149
HpaII CCGG 1 cut(s) 812
HphI GGTGA 3 cut(s) 163, 193, 1249
Hpy188I TCNGA 9 cut(s) 274, 283, 301, 673, 888, 1069, 1086, 1111, 1465
Hpy188III TCNNGA 5 cut(s) 178, 367, 803, 851, 1509
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 515, 675
HpyCH4V TGCA 6 cut(s) 25, 197, 521, 590, 921, 1286
HpyF10VI GCNNNNNNNGC 7 cut(s) 120, 533, 628, 637, 1163, 1366, 1439
HpyF3I CTNAG 4 cut(s) 451, 887, 1275, 1434
HpySE526I ACGT 2 cut(s) 515, 675
HspAI GCGC 1 cut(s) 479
KpnI GGTACC 1 cut(s) 36
Ksp22I TGATCA 3 cut(s) 180, 904, 1258
Kzo9I GATC 8 cut(s) 180, 264, 379, 652, 744, 904, 1086, 1258
LmnI GCTCC 6 cut(s) 46, 284, 500, 508, 997, 1142
Lsp1109I GCAGC 5 cut(s) 239, 511, 533, 574, 602
LweI GCATC 2 cut(s) 574, 670
MaeI CTAG 7 cut(s) 89, 224, 594, 641, 932, 1013, 1352
MaeII ACGT 2 cut(s) 515, 675
MaeIII GTNAC 5 cut(s) 169, 199, 529, 1180, 1237
MalI GATC 8 cut(s) 182, 266, 381, 654, 746, 906, 1088, 1260
MboI GATC 8 cut(s) 180, 264, 379, 652, 744, 904, 1086, 1258
MboII GAAGA 5 cut(s) 422, 580, 739, 1019, 1087
MflI RGATCY 1 cut(s) 744
MhlI GDGCHC 3 cut(s) 82, 505, 1139
MluCI AATT 7 cut(s) 134, 716, 834, 1090, 1198, 1250, 1416
MlyI GAGTC 3 cut(s) 929, 1073, 1158
MmeI TCCRAC 3 cut(s) 279, 384, 750
MroXI GAANNNNTTC 3 cut(s) 288, 716, 1408
MseI TTAA 5 cut(s) 699, 786, 816, 1025, 1365
MslI CAYNNNNRTG 4 cut(s) 176, 209, 433, 552
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 2 cut(s) 388, 633
MssI GTTTAAAC 1 cut(s) 1026
Mva1269I GAATGC 1 cut(s) 1276
MvaI CCWGG 2 cut(s) 388, 633
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 7 cut(s) 120, 533, 628, 637, 1163, 1366, 1439
NcoI CCATGG 1 cut(s) 461
NdeII GATC 8 cut(s) 180, 264, 379, 652, 744, 904, 1086, 1258
NheI GCTAGC 1 cut(s) 223
NlaIV GGNNCC 2 cut(s) 34, 280
NmuCI GTSAC 3 cut(s) 169, 199, 1237
OliI CACNNNNGTG 2 cut(s) 176, 433
PctI GAATGC 1 cut(s) 1276
PdmI GAANNNNTTC 3 cut(s) 288, 716, 1408
PfeI GAWTC 3 cut(s) 17, 571, 712
PflMI CCANNNNNTGG 1 cut(s) 462
PkrI GCNGC 7 cut(s) 229, 523, 526, 589, 592, 1248, 1489
PleI GAGTC 3 cut(s) 929, 1072, 1157
PmeI GTTTAAAC 1 cut(s) 1026
PpsI GAGTC 3 cut(s) 929, 1072, 1157
Ppu21I YACGTR 1 cut(s) 516
PsiI TTATAA 1 cut(s) 1337
Psp124BI GAGCTC 1 cut(s) 505
Psp6I CCWGG 2 cut(s) 386, 631
PspEI GGTNACC 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 1140
PspGI CCWGG 2 cut(s) 386, 631
PspN4I GGNNCC 2 cut(s) 34, 280
PspPI GGNCC 3 cut(s) 635, 827, 1156
PsrI GAACNNNNNNTAC 2 cut(s) 589, 621
PstI CTGCAG 2 cut(s) 199, 592
PsuI RGATCY 1 cut(s) 744
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 3 cut(s) 34, 73, 783
RsaNI GTAC 3 cut(s) 33, 72, 782
RseI CAYNNNNRTG 4 cut(s) 176, 209, 433, 552
SacI GAGCTC 1 cut(s) 505
SaqAI TTAA 5 cut(s) 699, 786, 816, 1025, 1365
SatI GCNGC 7 cut(s) 228, 522, 525, 588, 591, 1247, 1488
Sau3AI GATC 8 cut(s) 180, 264, 379, 652, 744, 904, 1086, 1258
Sau96I GGNCC 3 cut(s) 635, 827, 1156
SchI GAGTC 3 cut(s) 929, 1073, 1158
ScrFI CCNGG 2 cut(s) 388, 633
SduI GDGCHC 3 cut(s) 82, 505, 1139
SfaNI GCATC 2 cut(s) 574, 670
SfcI CTRYAG 2 cut(s) 195, 588
SfiI GGCCNNNNNGGCC 1 cut(s) 1163
SinI GGWCC 2 cut(s) 635, 827
SmiMI CAYNNNNRTG 4 cut(s) 176, 209, 433, 552
SmlI CTYRAG 3 cut(s) 431, 688, 1208
SmoI CTYRAG 3 cut(s) 431, 688, 1208
Sse9I AATT 7 cut(s) 134, 716, 834, 1090, 1198, 1250, 1416
SsiI CCGC 5 cut(s) 56, 527, 638, 1247, 1487
SspMI CTAG 7 cut(s) 89, 224, 594, 641, 932, 1013, 1352
SstI GAGCTC 1 cut(s) 505
StyD4I CCNGG 2 cut(s) 386, 631
StyI CCWWGG 2 cut(s) 461, 939
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 2 cut(s) 518, 678
TaqI TCGA 4 cut(s) 1098, 1147, 1202, 1498
TasI AATT 7 cut(s) 134, 716, 834, 1090, 1198, 1250, 1416
TatI WGTACW 1 cut(s) 71
TauI GCSGC 2 cut(s) 1249, 1490
TfiI GAWTC 3 cut(s) 17, 571, 712
Tru1I TTAA 5 cut(s) 699, 786, 816, 1025, 1365
Tru9I TTAA 5 cut(s) 699, 786, 816, 1025, 1365
TscAI CASTG 2 cut(s) 27, 43
TseFI GTSAC 3 cut(s) 169, 199, 1237
TseI GCWGC 5 cut(s) 227, 521, 524, 587, 590
Tsp45I GTSAC 3 cut(s) 169, 199, 1237
TspDTI ATGAA 8 cut(s) 17, 227, 423, 533, 570, 725, 938, 1464
TspRI CASTG 2 cut(s) 27, 43
Van91I CCANNNNNTGG 1 cut(s) 462
VpaK11BI GGWCC 2 cut(s) 635, 827
XagI CCTNNNNNAGG 2 cut(s) 253, 992
XapI RAATTY 2 cut(s) 134, 1198
XmnI GAANNNNTTC 3 cut(s) 288, 716, 1408
XspI CTAG 7 cut(s) 89, 224, 594, 641, 932, 1013, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.