Rw4G012930

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001004
Physical Location & Seq
Forward (+)
30346315 .. 30348953
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012930.1

Sequence Viewer

Length: 1386 bp
ATGGCAGAAAAAAATGGAGGTAATCAAAGTCACATTCTTGTTTTCTTTTTTCCAGTTCAAGGTCATATGAACCCAATGGTTCAATTCTCCAAGCGCCTAGCCTCCAAGGGTCAAAAGGTCACAATAGTCACAACCACCTCTGCTAGCAAATCCATGAAAACAGGCTCTTTTGGACGCAACCTGAACATCGAACTTGTTTCAGATGGCTCCGAACATGTTCAGCAAGGGTCGGAAACCATGAAGCAATCTGTCGAGCGTGTCCAAACTGAAACTACGAAATCTCTAGTCGAGCTTATCAAGAAGATCAAGAATAGTAGTGATGCAAATGAGAAATACCTGCTCAAGTTCCTGGTTTACCATTACAGCATGCCTTGGGCTTTGAACATAGCACGAGAGCAAGGCATAGATGGTGGTCCATTTTATACAACTCCGGCTTCCGTTAAAACCATATGTTACCACTATCACAAAGGAGTACTGAAGCTTCCCTTAGAAGAGCCGACGAAAAAATTGCCTGGCCTACCACCACTACAGCTCGAAGATTTACCATCTTTTTTCTCAGATCCTAATTCAGACCCAATTTTCGTTGACATTGCCATGCAGCAATTCTCCAATTTGAGTGAAGTGAAATGGATCTTCCATAGCACTTTCGAAAAATTGGAAAATGAGGTACTGGAATGGATGGCAAACCAAAGCTTACCGATCAAGGCGATAGGACCTACAATTCCGTCAATGTTTTTGGACAAAAAGTTGGAGGATGACAAAGACTATGGTCTTAACCTTTTTGAGCCTAATGTGGAGTGCACGGAGTGGTTAGACTCCAAGGAAACAGGTTCAGTCGTTTATGCATCATTTGGAAGTTTAGCCAACCTCACTAAAGAGCAATTTGAAGAACTAGCATGGGGTCTATATAACAGCAACCACAACTTCTTATGGGTAGTTCGAGAATCAGAAAAGGAAAAGCTCCCAACAAATTTCGGAGATAGGATAGCGGAGAAGGGTCTTGTGGTGACTTGGTGCACACAGTTACAAGTTTTGGCTCACAAGGCTGTGGGATGCTTTCTTACTCATTGTGGATGGAATTCGGCTCTCGAAGCATTAAGCTTGGGAGTACCAATGGTGGGAATGCCGCACCGGGCCGATCATCCAACTGTTGCTAAATATGTTAAGGATGTGTGGAAAGTCGGAGTTAGGGTAAAGGTGAAGGAGGGCTCTGTGACGAAAGAAGAAATAAGTGCATGTATTAGGCAAGTCATGGACACAGACAAAGGGACGGAGTTTAGAAAAGCTGCACTAGTTTGGAAGGAATTGGCTAAAGAGGCAATGGCTGAGGGTGGAAGCTCTGATAAGAATATTGAGGAATTTGTGGCCAAAATGAAGTTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

461

Amino Acids

51.75

Weight (kDa)

6.34

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 26 - 421 5.2e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
AciI CCGC 2 cut(s) 989, 1127
AclWI GGATC 2 cut(s) 554, 638
AcoI YGGCCR 1 cut(s) 1365
AcsI RAATTY 3 cut(s) 970, 1078, 1358
AcuI CTGAAG 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 807
AfaI GTAC 3 cut(s) 474, 669, 1110
AfiI CCNNNNNNNGG 2 cut(s) 59, 1118
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 4 cut(s) 59, 83, 382, 887
AhlI ACTAGT 1 cut(s) 1291
AjnI CCWGG 2 cut(s) 348, 511
AluBI AGCT 8 cut(s) 292, 481, 532, 693, 961, 1101, 1286, 1338
AluI AGCT 8 cut(s) 292, 481, 532, 693, 961, 1101, 1286, 1338
Alw21I GWGCWC 2 cut(s) 803, 1019
Alw44I GTGCAC 2 cut(s) 799, 1015
AlwI GGATC 2 cut(s) 554, 638
AoxI GGCC 3 cut(s) 514, 1134, 1365
ApaLI GTGCAC 2 cut(s) 799, 1015
ApeKI GCWGC 2 cut(s) 598, 1286
ApoI RAATTY 3 cut(s) 970, 1078, 1358
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
Asp700I GAANNNNTTC 1 cut(s) 216
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 3 cut(s) 413, 713, 1134
AsuC2I CCSGG 1 cut(s) 1133
AsuHPI GGTGA 2 cut(s) 1018, 1210
AsuII TTCGAA 1 cut(s) 648
AsuNHI GCTAGC 1 cut(s) 143
AvaII GGWCC 2 cut(s) 413, 713
BaeGI GKGCMC 2 cut(s) 803, 1019
BalI TGGCCA 1 cut(s) 1367
BanII GRGCYC 1 cut(s) 1211
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BauI CACGAG 1 cut(s) 390
Bbv12I GWGCWC 2 cut(s) 803, 1019
BbvCI CCTCAGC 1 cut(s) 1326
BbvI GCAGC 2 cut(s) 610, 1273
BccI CCATC 5 cut(s) 197, 401, 553, 673, 1068
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 2 cut(s) 350, 513
BcnI CCSGG 1 cut(s) 1133
BcuI ACTAGT 1 cut(s) 1291
BfaI CTAG 5 cut(s) 98, 144, 284, 893, 1292
BfmI CTRYAG 1 cut(s) 527
BfoI RGCGCY 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 3 cut(s) 599, 1127, 1287
BlsI GCNGC 3 cut(s) 600, 1128, 1288
BmcAI AGTACT 1 cut(s) 474
Bme1390I CCNGG 3 cut(s) 350, 513, 1133
Bme18I GGWCC 2 cut(s) 413, 713
BmgT120I GGNCC 3 cut(s) 413, 713, 1134
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 3 cut(s) 350, 513, 1133
BmsI GCATC 3 cut(s) 310, 854, 1043
BmtI GCTAGC 1 cut(s) 147
BoxI GACNNNNGTC 1 cut(s) 768
Bpu10I CCTNAGC 1 cut(s) 1326
Bpu14I TTCGAA 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 1133
BsaJI CCNNGG 3 cut(s) 105, 371, 819
BsaXI ACNNNNNCTCC 2 cut(s) 1176, 1206
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 1118
Bse1I ACTGG 2 cut(s) 53, 675
Bse3DI GCAATG 2 cut(s) 588, 1326
BseBI CCWGG 2 cut(s) 350, 513
BseDI CCNNGG 3 cut(s) 105, 371, 819
BseGI GGATG 6 cut(s) 684, 760, 1058, 1079, 1141, 1174
BseLI CCNNNNNNNGG 2 cut(s) 59, 1118
BseMI GCAATG 2 cut(s) 588, 1326
BseMII CTCAG 2 cut(s) 570, 1317
BseNI ACTGG 2 cut(s) 53, 675
BseSI GKGCMC 2 cut(s) 803, 1019
BseXI GCAGC 2 cut(s) 610, 1273
BsgI GTGCAG 1 cut(s) 1272
BshFI GGCC 3 cut(s) 516, 1136, 1367
BsiHKAI GWGCWC 2 cut(s) 803, 1019
BsiSI CCGG 2 cut(s) 431, 1132
BslFI GGGAC 1 cut(s) 1282
BslI CCNNNNNNNGG 2 cut(s) 59, 1118
BsmFI GGGAC 1 cut(s) 1282
BsmI GAATGC 1 cut(s) 1128
BsnI GGCC 3 cut(s) 516, 1136, 1367
Bsp119I TTCGAA 1 cut(s) 648
Bsp1286I GDGCHC 3 cut(s) 803, 1019, 1211
Bsp143I GATC 5 cut(s) 303, 559, 630, 699, 1138
BspACI CCGC 2 cut(s) 989, 1127
BspANI GGCC 3 cut(s) 516, 1136, 1367
BspCNI CTCAG 2 cut(s) 569, 1318
BspLI GGNNCC 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 345
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 2 cut(s) 554, 638
BspQI GCTCTTC 1 cut(s) 486
BspT104I TTCGAA 1 cut(s) 648
BsrDI GCAATG 2 cut(s) 588, 1326
BsrI ACTGG 2 cut(s) 53, 675
BssECI CCNNGG 3 cut(s) 105, 371, 819
BssMI GATC 5 cut(s) 303, 559, 630, 699, 1138
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 3 cut(s) 105, 371, 819
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 350, 513
Bst4CI ACNGT 2 cut(s) 1023, 1150
Bst6I CTCTTC 1 cut(s) 486
BstBI TTCGAA 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 145, 368
BstDEI CTNAG 3 cut(s) 487, 556, 1326
BstF5I GGATG 6 cut(s) 684, 760, 1058, 1079, 1141, 1174
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 5 cut(s) 306, 562, 633, 702, 1141
BstMBI GATC 5 cut(s) 303, 559, 630, 699, 1138
BstMWI GCNNNNNNNGC 3 cut(s) 1043, 1091, 1316
BstNI CCWGG 2 cut(s) 350, 513
BstNSI RCATGY 3 cut(s) 218, 370, 1239
BstPAI GACNNNNGTC 1 cut(s) 768
BstSCI CCNGG 3 cut(s) 348, 511, 1131
BstSFI CTRYAG 1 cut(s) 527
BstSLI GKGCMC 2 cut(s) 803, 1019
BstV1I GCAGC 2 cut(s) 610, 1273
BstX2I RGATCY 2 cut(s) 559, 630
BstYI RGATCY 2 cut(s) 559, 630
BsuRI GGCC 3 cut(s) 516, 1136, 1367
BtsCI GGATG 6 cut(s) 684, 760, 1058, 1079, 1141, 1174
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 145, 368
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 3 cut(s) 413, 713, 1134
CseI GACGC 1 cut(s) 183
Csp6I GTAC 3 cut(s) 473, 668, 1109
CviAII CATG 8 cut(s) 154, 215, 238, 367, 595, 897, 1236, 1252
CviQI GTAC 3 cut(s) 473, 668, 1109
DdeI CTNAG 3 cut(s) 487, 556, 1326
DpnI GATC 5 cut(s) 305, 561, 632, 701, 1140
DpnII GATC 5 cut(s) 303, 559, 630, 699, 1138
DraIII CACNNNGTG 1 cut(s) 807
EaeI YGGCCR 1 cut(s) 1365
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 3 cut(s) 105, 371, 819
Eco24I GRGCYC 1 cut(s) 1211
Eco47I GGWCC 2 cut(s) 413, 713
Eco57I CTGAAG 1 cut(s) 497
EcoO109I RGGNCCY 1 cut(s) 713
EcoRI GAATTC 1 cut(s) 1078
EcoRII CCWGG 2 cut(s) 348, 511
EcoT14I CCWWGG 3 cut(s) 105, 371, 819
EcoT22I ATGCAT 1 cut(s) 847
EcoT38I GRGCYC 1 cut(s) 1211
ErhI CCWWGG 3 cut(s) 105, 371, 819
FaeI CATG 8 cut(s) 157, 218, 241, 370, 598, 900, 1239, 1255
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 1 cut(s) 1282
FatI CATG 8 cut(s) 153, 214, 237, 366, 594, 896, 1235, 1251
FauNDI CATATG 2 cut(s) 66, 449
Fnu4HI GCNGC 3 cut(s) 599, 1127, 1287
FokI GGATG 6 cut(s) 691, 767, 1065, 1086, 1128, 1181
FriOI GRGCYC 1 cut(s) 1211
Fsp4HI GCNGC 3 cut(s) 599, 1127, 1287
FspBI CTAG 5 cut(s) 98, 144, 284, 893, 1292
GlaI GCGC 1 cut(s) 95
GluI GCNGC 3 cut(s) 599, 1127, 1287
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 3 cut(s) 516, 1136, 1367
HapII CCGG 2 cut(s) 431, 1132
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 96
Hin1II CATG 8 cut(s) 157, 218, 241, 370, 598, 900, 1239, 1255
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 2 cut(s) 586, 1380
HindII GTYRAC 2 cut(s) 586, 1380
HindIII AAGCTT 3 cut(s) 479, 691, 1099
HinfI GANTC 2 cut(s) 815, 944
HpaI GTTAAC 1 cut(s) 1380
HpaII CCGG 2 cut(s) 431, 1132
HphI GGTGA 2 cut(s) 1018, 1210
Hpy166II GTNNAC 5 cut(s) 355, 586, 801, 1017, 1380
Hpy188I TCNGA 9 cut(s) 202, 211, 232, 559, 571, 949, 977, 1184, 1342
Hpy188III TCNNGA 4 cut(s) 298, 307, 941, 1088
Hpy8I GTNNAC 5 cut(s) 355, 586, 801, 1017, 1380
Hpy99I CGWCG 1 cut(s) 502
HpyAV CCTTC 3 cut(s) 988, 1195, 1294
HpyCH4III ACNGT 2 cut(s) 1023, 1150
HpyCH4V TGCA 7 cut(s) 323, 598, 801, 845, 1017, 1235, 1289
HpyF10VI GCNNNNNNNGC 3 cut(s) 1043, 1091, 1316
HpyF3I CTNAG 3 cut(s) 487, 556, 1326
Hsp92II CATG 8 cut(s) 157, 218, 241, 370, 598, 900, 1239, 1255
HspAI GCGC 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 1380
Kzo9I GATC 5 cut(s) 303, 559, 630, 699, 1138
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 2 cut(s) 212, 966
Lsp1109I GCAGC 2 cut(s) 610, 1273
LweI GCATC 3 cut(s) 310, 854, 1043
MaeI CTAG 5 cut(s) 98, 144, 284, 893, 1292
MaeIII GTNAC 7 cut(s) 29, 118, 127, 452, 1006, 1023, 1213
MalI GATC 5 cut(s) 305, 561, 632, 701, 1140
MboI GATC 5 cut(s) 303, 559, 630, 699, 1138
MboII GAAGA 6 cut(s) 313, 503, 548, 625, 899, 1235
MflI RGATCY 2 cut(s) 559, 630
MhlI GDGCHC 3 cut(s) 803, 1019, 1211
MlsI TGGCCA 1 cut(s) 1367
MluNI TGGCCA 1 cut(s) 1367
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 4 cut(s) 210, 729, 1162, 1169
Mox20I TGGCCA 1 cut(s) 1367
Mph1103I ATGCAT 1 cut(s) 847
MroXI GAANNNNTTC 1 cut(s) 216
MscI TGGCCA 1 cut(s) 1367
MseI TTAA 6 cut(s) 441, 774, 1097, 1164, 1379, 1384
MslI CAYNNNNRTG 1 cut(s) 593
Msp20I TGGCCA 1 cut(s) 1367
MspI CCGG 2 cut(s) 431, 1132
MspR9I CCNGG 3 cut(s) 350, 513, 1133
Mva1269I GAATGC 1 cut(s) 1128
MvaI CCWGG 2 cut(s) 350, 513
MwoI GCNNNNNNNGC 3 cut(s) 1043, 1091, 1316
NciI CCSGG 1 cut(s) 1133
NdeI CATATG 2 cut(s) 66, 449
NdeII GATC 5 cut(s) 303, 559, 630, 699, 1138
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 8 cut(s) 157, 218, 241, 370, 598, 900, 1239, 1255
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 5 cut(s) 29, 118, 127, 1006, 1213
NsiI ATGCAT 1 cut(s) 847
NspI RCATGY 3 cut(s) 218, 370, 1239
NspV TTCGAA 1 cut(s) 648
PaeI GCATGC 1 cut(s) 370
PciI ACATGT 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 486
PctI GAATGC 1 cut(s) 1128
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 944
PkrI GCNGC 3 cut(s) 600, 1128, 1288
PleI GAGTC 1 cut(s) 809
PpsI GAGTC 1 cut(s) 809
PpuMI RGGWCCY 1 cut(s) 713
PscI ACATGT 1 cut(s) 214
PshAI GACNNNNGTC 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 2 cut(s) 348, 511
PspGI CCWGG 2 cut(s) 348, 511
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 3 cut(s) 413, 713, 1134
PspPPI RGGWCCY 1 cut(s) 713
PsuI RGATCY 2 cut(s) 559, 630
RsaI GTAC 3 cut(s) 474, 669, 1110
RsaNI GTAC 3 cut(s) 473, 668, 1109
RseI CAYNNNNRTG 1 cut(s) 593
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 6 cut(s) 441, 774, 1097, 1164, 1379, 1384
SatI GCNGC 3 cut(s) 599, 1127, 1287
Sau3AI GATC 5 cut(s) 303, 559, 630, 699, 1138
Sau96I GGNCC 3 cut(s) 413, 713, 1134
ScaI AGTACT 1 cut(s) 474
SchI GAGTC 1 cut(s) 809
ScrFI CCNGG 3 cut(s) 350, 513, 1133
SduI GDGCHC 3 cut(s) 803, 1019, 1211
SfaNI GCATC 3 cut(s) 310, 854, 1043
SfcI CTRYAG 1 cut(s) 527
SfuI TTCGAA 1 cut(s) 648
SinI GGWCC 2 cut(s) 413, 713
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 1291
SphI GCATGC 1 cut(s) 370
SsiI CCGC 2 cut(s) 989, 1127
SspI AATATT 1 cut(s) 1351
SspMI CTAG 5 cut(s) 98, 144, 284, 893, 1292
StyD4I CCNGG 3 cut(s) 348, 511, 1131
StyI CCWWGG 3 cut(s) 105, 371, 819
TaaI ACNGT 2 cut(s) 1023, 1150
TaqI TCGA 7 cut(s) 189, 252, 288, 534, 648, 940, 1089
TatI WGTACW 1 cut(s) 472
TauI GCSGC 1 cut(s) 1129
TfiI GAWTC 1 cut(s) 944
Tru1I TTAA 6 cut(s) 441, 774, 1097, 1164, 1379, 1384
Tru9I TTAA 6 cut(s) 441, 774, 1097, 1164, 1379, 1384
TseFI GTSAC 5 cut(s) 29, 118, 127, 1006, 1213
TseI GCWGC 2 cut(s) 598, 1286
Tsp45I GTSAC 5 cut(s) 29, 118, 127, 1006, 1213
TspDTI ATGAA 3 cut(s) 83, 170, 254
TspGWI ACGGA 4 cut(s) 427, 714, 818, 1286
VneI GTGCAC 2 cut(s) 799, 1015
VpaK11BI GGWCC 2 cut(s) 413, 713
XapI RAATTY 3 cut(s) 970, 1078, 1358
XceI RCATGY 3 cut(s) 218, 370, 1239
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 5 cut(s) 98, 144, 284, 893, 1292
ZrmI AGTACT 1 cut(s) 474
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.