Rmu_sc0029001.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029001.1
OG0001004
Physical Location & Seq
Forward (+)
407 .. 1186
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029001.1_g000001.1.cds

Sequence Viewer

Length: 780 bp
atggagaaaagatcacaaatgcaaataggtggtgctcatgtactagtgtttccttatccagttcaaggccacatttgcccgatggttgagttctccaaacgccttggttcaaagggtgttagggtcactgtaatcatcacaaccgtctctgcagccaccaagtccatgaaacaactactggcagctcaacccaaaaacacctctttcaggatcgagctcatttctgacggctccgaacacccccaaaagtcggaaactgctgaagaatacctcgaccgtttcagaagtgtcactatgcaaaatctatccaaccttatcaccaacattaagaacaagagtgctactcatgccttcgtcaacaatgatagtagtgatgaagatgacgacgactaccccctcaagtgcatcgtttaccactcgggcatgccctggttgttagacgtagcgcgacaacatggcatggatggagctccattttttacttgttcgtctgcggtcactgccatctttcatcacttctatgagggagtgttaaagattcctccaaaagatgctgcagctagagcatctagtacgacaatgctaatgccttccatgtccgcacccgtagggttgaatgatctaccatcgtttctctctgatgttgatggctacccaacttatcttaaacttaccatgaaccagttctccaatattggagaagttaaatggatcttctatagcacttttgagaagttggaggacaaggtaattaacctctggatattacatgtttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

259

Amino Acids

28.99

Weight (kDa)

6.3

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 448
AciI CCGC 2 cut(s) 494, 600
AclWI GGATC 2 cut(s) 218, 719
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 2 cut(s) 42, 574
AfiI CCNNNNNNNGG 3 cut(s) 65, 207, 250
AflIII ACRYGT 1 cut(s) 769
AgsI TTSAA 3 cut(s) 65, 111, 616
AhlI ACTAGT 1 cut(s) 43
AjnI CCWGG 1 cut(s) 428
AloI GAACNNNNNNTCC 2 cut(s) 671, 703
AluBI AGCT 4 cut(s) 185, 217, 470, 560
AluI AGCT 4 cut(s) 185, 217, 470, 560
Alw21I GWGCWC 3 cut(s) 37, 219, 472
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 2 cut(s) 218, 719
Ama87I CYCGRG 1 cut(s) 418
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 4 cut(s) 152, 182, 554, 557
Asp700I GAANNNNTTC 1 cut(s) 683
AspLEI GCGC 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 418
BanII GRGCYC 2 cut(s) 219, 472
Bbv12I GWGCWC 3 cut(s) 37, 219, 472
BbvI GCAGC 4 cut(s) 164, 194, 541, 569
BccI CCATC 5 cut(s) 76, 458, 512, 634, 641
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 151
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 3 cut(s) 44, 561, 570
BfmI CTRYAG 3 cut(s) 150, 555, 718
BisI GCNGC 4 cut(s) 153, 183, 555, 558
BlsI GCNGC 4 cut(s) 154, 184, 556, 559
Bme1390I CCNGG 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 430
BmsI GCATC 3 cut(s) 414, 541, 575
BplI GAGNNNNNCTC 2 cut(s) 328, 360
BpuEI CTTGAG 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 103, 428
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 207, 250
Bse1I ACTGG 3 cut(s) 59, 183, 682
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 2 cut(s) 103, 428
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 3 cut(s) 65, 207, 250
BseNI ACTGG 3 cut(s) 59, 183, 682
BseXI GCAGC 4 cut(s) 164, 194, 541, 569
Bsh1236I CGCG 1 cut(s) 448
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 3 cut(s) 37, 219, 472
BsiHKCI CYCGRG 1 cut(s) 418
BslI CCNNNNNNNGG 3 cut(s) 65, 207, 250
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsnI GGCC 1 cut(s) 69
BsoBI CYCGRG 1 cut(s) 418
Bsp1286I GDGCHC 3 cut(s) 37, 219, 472
Bsp143I GATC 4 cut(s) 11, 210, 619, 711
BspACI CCGC 2 cut(s) 494, 600
BspANI GGCC 1 cut(s) 69
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 232
BspMAI CTGCAG 2 cut(s) 154, 559
BspPI GGATC 2 cut(s) 218, 719
BsrI ACTGG 3 cut(s) 59, 183, 682
BssECI CCNNGG 2 cut(s) 103, 428
BssMI GATC 4 cut(s) 11, 210, 619, 711
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 3 cut(s) 130, 145, 278
BstC8I GCNNGC 1 cut(s) 425
BstENI CCTNNNNNAGG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 1 cut(s) 448
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 4 cut(s) 14, 213, 622, 714
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 4 cut(s) 11, 210, 619, 711
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 4 cut(s) 75, 347, 500, 563
BstNI CCWGG 1 cut(s) 430
BstNSI RCATGY 2 cut(s) 427, 773
BstSCI CCNGG 1 cut(s) 428
BstSFI CTRYAG 3 cut(s) 150, 555, 718
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 4 cut(s) 164, 194, 541, 569
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 469
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 2 cut(s) 126, 498
Cac8I GCNNGC 1 cut(s) 425
CfoI GCGC 1 cut(s) 448
Csp6I GTAC 2 cut(s) 41, 573
CviAII CATG 9 cut(s) 38, 166, 347, 424, 455, 460, 595, 676, 770
CviJI RGCY 8 cut(s) 69, 155, 185, 217, 231, 470, 560, 651
CviKI_1 RGCY 8 cut(s) 69, 155, 185, 217, 231, 470, 560, 651
CviQI GTAC 2 cut(s) 41, 573
DpnI GATC 4 cut(s) 13, 212, 621, 713
DpnII GATC 4 cut(s) 11, 210, 619, 711
Ecl136II GAGCTC 2 cut(s) 217, 470
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 219, 472
Eco53kI GAGCTC 2 cut(s) 217, 470
Eco57I CTGAAG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 418
EcoICRI GAGCTC 2 cut(s) 217, 470
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 2 cut(s) 219, 472
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 9 cut(s) 41, 169, 350, 427, 458, 463, 598, 679, 773
FatI CATG 9 cut(s) 37, 165, 346, 423, 454, 459, 594, 675, 769
Fnu4HI GCNGC 4 cut(s) 153, 183, 555, 558
FokI GGATG 1 cut(s) 476
FriOI GRGCYC 2 cut(s) 219, 472
Fsp4HI GCNGC 4 cut(s) 153, 183, 555, 558
FspBI CTAG 3 cut(s) 44, 561, 570
GlaI GCGC 1 cut(s) 447
GluI GCNGC 4 cut(s) 153, 183, 555, 558
HaeIII GGCC 1 cut(s) 69
HhaI GCGC 1 cut(s) 448
Hin1II CATG 9 cut(s) 41, 169, 350, 427, 458, 463, 598, 679, 773
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 1 cut(s) 538
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 358, 412
Hpy188I TCNGA 5 cut(s) 226, 235, 253, 284, 640
Hpy188III TCNNGA 2 cut(s) 208, 760
Hpy8I GTNNAC 2 cut(s) 358, 412
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 2 cut(s) 361, 600
HpyCH4III ACNGT 3 cut(s) 130, 145, 278
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 5 cut(s) 22, 152, 298, 405, 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 347, 500, 563
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 9 cut(s) 41, 169, 350, 427, 458, 463, 598, 679, 773
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 4 cut(s) 11, 210, 619, 711
LmnI GCTCC 3 cut(s) 236, 467, 475
LpnPI CCDG 7 cut(s) 72, 164, 193, 415, 442, 695, 745
Lsp1109I GCAGC 4 cut(s) 164, 194, 541, 569
LweI GCATC 3 cut(s) 414, 541, 575
MaeI CTAG 3 cut(s) 44, 561, 570
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 3 cut(s) 124, 289, 496
MalI GATC 4 cut(s) 13, 212, 621, 713
MboI GATC 4 cut(s) 11, 210, 619, 711
MboII GAAGA 3 cut(s) 275, 389, 706
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 3 cut(s) 37, 219, 472
MluCI AATT 1 cut(s) 750
MmeI TCCRAC 3 cut(s) 231, 333, 717
MnlI CCTC 7 cut(s) 211, 281, 407, 517, 552, 733, 767
MroXI GAANNNNTTC 1 cut(s) 683
MseI TTAA 6 cut(s) 327, 533, 666, 705, 753, 778
MslI CAYNNNNRTG 1 cut(s) 519
MspR9I CCNGG 1 cut(s) 430
MvaI CCWGG 1 cut(s) 430
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 4 cut(s) 75, 347, 500, 563
NdeII GATC 4 cut(s) 11, 210, 619, 711
NlaIII CATG 9 cut(s) 41, 169, 350, 427, 458, 463, 598, 679, 773
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 3 cut(s) 124, 289, 496
NspI RCATGY 2 cut(s) 427, 773
PaeI GCATGC 1 cut(s) 427
PciI ACATGT 1 cut(s) 769
PdmI GAANNNNTTC 1 cut(s) 683
PfeI GAWTC 1 cut(s) 538
PkrI GCNGC 4 cut(s) 154, 184, 556, 559
PscI ACATGT 1 cut(s) 769
Psp124BI GAGCTC 2 cut(s) 219, 472
Psp6I CCWGG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 232
PstI CTGCAG 2 cut(s) 154, 559
PsuI RGATCY 1 cut(s) 711
RsaI GTAC 2 cut(s) 42, 574
RsaNI GTAC 2 cut(s) 41, 573
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 2 cut(s) 219, 472
SaqAI TTAA 6 cut(s) 327, 533, 666, 705, 753, 778
SatI GCNGC 4 cut(s) 153, 183, 555, 558
Sau3AI GATC 4 cut(s) 11, 210, 619, 711
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 3 cut(s) 37, 219, 472
SfaNI GCATC 3 cut(s) 414, 541, 575
SfcI CTRYAG 3 cut(s) 150, 555, 718
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SpeI ACTAGT 1 cut(s) 43
SphI GCATGC 1 cut(s) 427
Sse9I AATT 1 cut(s) 750
SsiI CCGC 2 cut(s) 494, 600
SspI AATATT 1 cut(s) 694
SspMI CTAG 3 cut(s) 44, 561, 570
SstI GAGCTC 2 cut(s) 219, 472
StyD4I CCNGG 1 cut(s) 428
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 3 cut(s) 130, 145, 278
TaiI ACGT 1 cut(s) 444
TaqI TCGA 2 cut(s) 213, 273
TasI AATT 1 cut(s) 750
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 6 cut(s) 327, 533, 666, 705, 753, 778
Tru9I TTAA 6 cut(s) 327, 533, 666, 705, 753, 778
TscAI CASTG 2 cut(s) 133, 505
TseFI GTSAC 3 cut(s) 124, 289, 496
TseI GCWGC 4 cut(s) 152, 182, 554, 557
Tsp45I GTSAC 3 cut(s) 124, 289, 496
TspDTI ATGAA 4 cut(s) 182, 390, 500, 692
TspRI CASTG 2 cut(s) 133, 505
XagI CCTNNNNNAGG 1 cut(s) 205
XceI RCATGY 2 cut(s) 427, 773
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 3 cut(s) 44, 561, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.