FvH4_4g11960

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001004
Physical Location & Seq
Forward (+)
15672560 .. 15675229
2670 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11960.t1

Sequence Viewer

Length: 1422 bp
ATGAAGCTGGATTTGGAAGAACAAATGGGTGGTGGTTCTGCTCAGAGCAGCCACATTCTAGTGTTCCCTTTTCCGGTTCAAGGTCACATGAATCCGATGGTTCAGTTCGCCAAGCGGCTAGTCTCCAAAGGCCAGAGGGTCACCATAGTCACCACCATCTCTTCTAGTAAATCCTTACCAACACTCAATCCCACCTCGTTCGGCTCCAACCTCAGAATGGAGTTCATCTCAGACGGCTCCGAACAAGTTAAGGGTGGTTCGGAAACTATAGAGGAGTCCATCGAGCGTTTCCGAATCGCAACCACCAAGTCCTTAACCAGCCTCATGACCAAGATCAGGAACAGCAGCGACGCGTCGCAATACCCTCTCAAGTTTGTGGTGTACCACTCGGGGATGCCATGGATTTTGGATGTGGCGAGGCGACAAGGCATCGATGGGGCTCCATTTTTCACGACTTCATTAGCAGTTGCAACTGTGTTTCACCATGTCCATGAAGGAACACTGAAGCTGCCGTTAGAAGAGCCTAGGGCAATAATGCCGTCCATGCCACCGTTGGAGCTGAATGATCTACCTACGTTTGTTTCTGATGTCGAGTCATACCCGGCTTTCCTTAAGCTTGCCATGAATCAATACTCCAACTTGAAGAAAGTAAACTGCATCTTCTTCAGCAGCTTTGACAAGTTGGAAAAAGAGTTACTAAAATGGATGGAGAGTCAAGACTGGCCGGTCAAGATGATAGGACCTACAATTCCATCAACGTTCTTGGACAAGCGGTTGGAGGATGACAAAGACTACGGTCTCAGCCTTTTCAAGCCAAATGTGGAGACTTGCATGAAATGGCTAGACTCCAAGAAACCTGGCTCAGTTGTCTATGCATCATTTGGAAGCTTGGCCGACCTAAGCATAGAGCAAACTGAGGAACTCGCATGCGGTCTAAGAAATAGCAGTTTCAACTTCCTGTGGGTAGTCCGAGAATCAGAACAAGATAAACTCCCTGAGAATTTTGTAGAGGAGATATCAGGGAAGGGTCTCGTAGTGAGTTGGTGCGCACAGCTACAAGTCTTGGCTCACAAGGCAGTGGGGTGTTTTCTTACTCACTGCGGATGGAATTCGACTCTCGAAGCGTTGAGCTTGGGGGTACCGATGGTGGTGTTGCCACACTGGGCTGATCAACCGACGAATGCGAAGTTTGTGGAGGATGTGTGGAAGGTCGGAGTTAGGGTTAATGTGAATAAGAAATCCGGTCTTGCAACAAAAGAAGAAATAGCTGTGTGCATTAAGGAGGTGATGGACAAGGAAAAGGGGATGAAGTTTAGAAAGGCCTCATTGATGTGGAAGGAATTGGCTAAGGAGGCTGTGGATGAAGGGGGAAGCTCTGATAAGAACATCGAAGAATTTGTGGCAAAAGTTCTATTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

474

Amino Acids

52.83

Weight (kDa)

6.07

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 19 - 433 4.7e-26 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 725
Acc16I TGCGCA 1 cut(s) 1048
Acc65I GGTACC 1 cut(s) 1138
AccB1I GGYRCC 1 cut(s) 1138
AccII CGCG 1 cut(s) 353
AciI CCGC 4 cut(s) 115, 772, 930, 1101
AclI AACGTT 1 cut(s) 758
AcoI YGGCCR 2 cut(s) 722, 891
AcsI RAATTY 3 cut(s) 1000, 1108, 1394
AcuI CTGAAG 2 cut(s) 524, 649
AfaI GTAC 2 cut(s) 383, 1140
AfiI CCNNNNNNNGG 4 cut(s) 73, 80, 217, 336
AflII CTTAAG 1 cut(s) 611
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 4 cut(s) 80, 643, 811, 952
AjnI CCWGG 1 cut(s) 856
AjuI GAANNNNNNNTTGG 1 cut(s) 28
Alw26I GTCTC 4 cut(s) 127, 803, 818, 1034
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 4 cut(s) 130, 722, 891, 1320
ApeKI GCWGC 4 cut(s) 48, 345, 508, 669
ApoI RAATTY 3 cut(s) 1000, 1108, 1394
AseI ATTAAT 1 cut(s) 1415
Asp718I GGTACC 1 cut(s) 1138
AspA2I CCTAGG 1 cut(s) 524
AspLEI GCGC 1 cut(s) 1049
AspS9I GGNCC 1 cut(s) 740
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 4 cut(s) 133, 142, 473, 1297
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 1 cut(s) 740
AvrII CCTAGG 1 cut(s) 524
BanI GGYRCC 1 cut(s) 1138
BanII GRGCYC 1 cut(s) 442
BbvI GCAGC 4 cut(s) 60, 357, 495, 681
BccI CCATC 9 cut(s) 91, 164, 287, 428, 700, 760, 1098, 1138, 1282
BceAI ACGGC 3 cut(s) 250, 496, 523
BciT130I CCWGG 1 cut(s) 858
BclI TGATCA 1 cut(s) 1168
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 4 cut(s) 127, 803, 818, 1034
BfaI CTAG 5 cut(s) 59, 119, 165, 525, 842
BfmI CTRYAG 1 cut(s) 267
BfrI CTTAAG 1 cut(s) 611
BisI GCNGC 5 cut(s) 49, 116, 346, 509, 670
BlnI CCTAGG 1 cut(s) 524
BlsI GCNGC 5 cut(s) 50, 117, 347, 510, 671
Bme1390I CCNGG 2 cut(s) 602, 858
Bme18I GGWCC 1 cut(s) 740
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 740
BmiI GGNNCC 4 cut(s) 205, 238, 441, 1140
BmrFI CCNGG 2 cut(s) 602, 858
BmrI ACTGGG 1 cut(s) 1171
BmsI GCATC 4 cut(s) 384, 438, 666, 884
BmuI ACTGGG 1 cut(s) 1171
BoxI GACNNNNGTC 1 cut(s) 795
BplI GAGNNNNNCTC 2 cut(s) 212, 244
Bpu10I CCTNAGC 2 cut(s) 899, 1347
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 602
Bsa29I ATCGAT 1 cut(s) 432
BsaI GGTCTC 2 cut(s) 803, 1034
BsaJI CCNNGG 2 cut(s) 398, 524
BsaWI WCCGGW 2 cut(s) 73, 1241
BsaXI ACNNNNNCTCC 4 cut(s) 1187, 1206, 1217, 1236
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 80, 217, 336
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 2 cut(s) 725, 1166
BseBI CCWGG 1 cut(s) 858
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 398, 524
BseGI GGATG 8 cut(s) 399, 415, 711, 787, 1109, 1204, 1311, 1366
BseLI CCNNNNNNNGG 4 cut(s) 73, 80, 217, 336
BseMII CTCAG 7 cut(s) 56, 226, 243, 814, 876, 906, 987
BseNI ACTGG 2 cut(s) 725, 1166
BseRI GAGGAG 2 cut(s) 287, 1025
BseXI GCAGC 4 cut(s) 60, 357, 495, 681
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 4 cut(s) 132, 724, 893, 1322
BshNI GGYRCC 1 cut(s) 1138
BshVI ATCGAT 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 4 cut(s) 74, 602, 725, 1242
BslI CCNNNNNNNGG 4 cut(s) 73, 80, 217, 336
BsmAI GTCTC 4 cut(s) 127, 803, 818, 1034
BsmI GAATGC 1 cut(s) 1186
BsnI GGCC 4 cut(s) 132, 724, 893, 1322
Bso31I GGTCTC 2 cut(s) 803, 1034
BsoBI CYCGRG 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 3 cut(s) 333, 565, 1168
Bsp19I CCATGG 1 cut(s) 398
BspACI CCGC 4 cut(s) 115, 772, 930, 1101
BspANI GGCC 4 cut(s) 132, 724, 893, 1322
BspCNI CTCAG 7 cut(s) 55, 225, 242, 813, 875, 907, 988
BspDI ATCGAT 1 cut(s) 432
BspFNI CGCG 1 cut(s) 353
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 4 cut(s) 205, 238, 441, 1140
BspQI GCTCTTC 1 cut(s) 513
BspT107I GGYRCC 1 cut(s) 1138
BspTI CTTAAG 1 cut(s) 611
BspTNI GGTCTC 2 cut(s) 803, 1034
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 2 cut(s) 725, 1166
BssAI RCCGGY 1 cut(s) 724
BssECI CCNNGG 2 cut(s) 398, 524
BssMI GATC 3 cut(s) 333, 565, 1168
BssT1I CCWWGG 2 cut(s) 398, 524
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 3 cut(s) 475, 552, 797
Bst6I CTCTTC 2 cut(s) 166, 513
BstAFI CTTAAG 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 618, 928
BstDSI CCRYGG 1 cut(s) 398
BstEII GGTNACC 1 cut(s) 139
BstF5I GGATG 8 cut(s) 399, 415, 711, 787, 1109, 1204, 1311, 1366
BstFNI CGCG 1 cut(s) 353
BstHHI GCGC 1 cut(s) 1049
BstKTI GATC 3 cut(s) 336, 568, 1171
BstMAI GTCTC 4 cut(s) 127, 803, 818, 1034
BstMBI GATC 3 cut(s) 333, 565, 1168
BstMWI GCNNNNNNNGC 3 cut(s) 544, 1073, 1352
BstNI CCWGG 1 cut(s) 858
BstNSI RCATGY 1 cut(s) 930
BstPAI GACNNNNGTC 1 cut(s) 795
BstPI GGTNACC 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 600, 856
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 4 cut(s) 60, 357, 495, 681
Bsu15I ATCGAT 1 cut(s) 432
BsuRI GGCC 4 cut(s) 132, 724, 893, 1322
BsuTUI ATCGAT 1 cut(s) 432
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 8 cut(s) 399, 415, 711, 787, 1109, 1204, 1311, 1366
BtsI GCAGTG 2 cut(s) 1083, 1096
BtsIMutI CAGTG 4 cut(s) 500, 1083, 1096, 1159
Cac8I GCNNGC 2 cut(s) 618, 928
CciI TCATGA 1 cut(s) 324
CfoI GCGC 1 cut(s) 1049
Cfr10I RCCGGY 1 cut(s) 724
Cfr13I GGNCC 1 cut(s) 740
ClaI ATCGAT 1 cut(s) 432
CseI GACGC 2 cut(s) 342, 359
Csp6I GTAC 2 cut(s) 382, 1139
CviAII CATG 9 cut(s) 88, 325, 399, 485, 491, 544, 622, 832, 927
CviQI GTAC 2 cut(s) 382, 1139
DpnI GATC 3 cut(s) 335, 567, 1170
DpnII GATC 3 cut(s) 333, 565, 1168
DrdI GACNNNNNNGTC 1 cut(s) 725
DseDI GACNNNNNNGTC 1 cut(s) 725
EaeI YGGCCR 2 cut(s) 722, 891
Eam1104I CTCTTC 2 cut(s) 166, 513
EarI CTCTTC 2 cut(s) 166, 513
Eco130I CCWWGG 2 cut(s) 398, 524
Eco147I AGGCCT 1 cut(s) 1322
Eco24I GRGCYC 1 cut(s) 442
Eco31I GGTCTC 2 cut(s) 803, 1034
Eco32I GATATC 1 cut(s) 1017
Eco47I GGWCC 1 cut(s) 740
Eco57I CTGAAG 2 cut(s) 524, 649
Eco88I CYCGRG 1 cut(s) 388
Eco91I GGTNACC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 740
EcoO65I GGTNACC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 1108
EcoRII CCWGG 1 cut(s) 856
EcoRV GATATC 1 cut(s) 1017
EcoT14I CCWWGG 2 cut(s) 398, 524
EcoT22I ATGCAT 1 cut(s) 877
EcoT38I GRGCYC 1 cut(s) 442
ErhI CCWWGG 2 cut(s) 398, 524
FaeI CATG 9 cut(s) 91, 328, 402, 488, 494, 547, 625, 835, 930
FatI CATG 9 cut(s) 87, 324, 398, 484, 490, 543, 621, 831, 926
FbaI TGATCA 1 cut(s) 1168
Fnu4HI GCNGC 5 cut(s) 49, 116, 346, 509, 670
FokI GGATG 8 cut(s) 406, 422, 718, 794, 1116, 1211, 1318, 1373
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 5 cut(s) 49, 116, 346, 509, 670
FspAI RTGCGCAY 1 cut(s) 1048
FspBI CTAG 5 cut(s) 59, 119, 165, 525, 842
FspI TGCGCA 1 cut(s) 1048
GlaI GCGC 1 cut(s) 1048
GluI GCNGC 5 cut(s) 49, 116, 346, 509, 670
HaeIII GGCC 4 cut(s) 132, 724, 893, 1322
HapII CCGG 4 cut(s) 74, 602, 725, 1242
HgaI GACGC 2 cut(s) 342, 359
HhaI GCGC 1 cut(s) 1049
Hin1II CATG 9 cut(s) 91, 328, 402, 488, 494, 547, 625, 835, 930
Hin6I GCGC 1 cut(s) 1047
HinP1I GCGC 1 cut(s) 1047
HindIII AAGCTT 2 cut(s) 614, 886
HinfI GANTC 9 cut(s) 91, 275, 294, 593, 625, 712, 845, 974, 1114
HpaII CCGG 4 cut(s) 74, 602, 725, 1242
HphI GGTGA 4 cut(s) 133, 142, 473, 1297
Hpy166II GTNNAC 2 cut(s) 382, 652
Hpy188III TCNNGA 6 cut(s) 325, 337, 451, 716, 730, 1118
Hpy8I GTNNAC 2 cut(s) 382, 652
Hpy99I CGWCG 3 cut(s) 353, 358, 1180
HpyAV CCTTC 5 cut(s) 488, 1018, 1201, 1330, 1358
HpyCH4III ACNGT 3 cut(s) 475, 552, 797
HpyCH4IV ACGT 2 cut(s) 575, 758
HpyCH4V TGCA 6 cut(s) 470, 657, 831, 875, 1250, 1275
HpyF10VI GCNNNNNNNGC 3 cut(s) 544, 1073, 1352
HpySE526I ACGT 2 cut(s) 575, 758
Hsp92II CATG 9 cut(s) 91, 328, 402, 488, 494, 547, 625, 835, 930
HspAI GCGC 1 cut(s) 1047
KpnI GGTACC 1 cut(s) 1142
Ksp22I TGATCA 1 cut(s) 1168
Kzo9I GATC 3 cut(s) 333, 565, 1168
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 4 cut(s) 209, 242, 445, 556
Lsp1109I GCAGC 4 cut(s) 60, 357, 495, 681
LweI GCATC 4 cut(s) 384, 438, 666, 884
MaeI CTAG 5 cut(s) 59, 119, 165, 525, 842
MaeII ACGT 2 cut(s) 575, 758
MaeIII GTNAC 4 cut(s) 83, 139, 148, 693
MalI GATC 3 cut(s) 335, 567, 1170
MboI GATC 3 cut(s) 333, 565, 1168
MboII GAAGA 8 cut(s) 29, 153, 530, 652, 655, 655, 1271, 1403
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 5 cut(s) 747, 1000, 1108, 1340, 1394
MluI ACGCGT 1 cut(s) 351
MlyI GAGTC 5 cut(s) 284, 602, 721, 839, 1108
MmeI TCCRAC 6 cut(s) 231, 534, 660, 663, 756, 1192
Mph1103I ATGCAT 1 cut(s) 877
MseI TTAA 6 cut(s) 249, 314, 612, 1224, 1278, 1415
MslI CAYNNNNRTG 3 cut(s) 59, 489, 1330
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 4 cut(s) 74, 602, 725, 1242
MspR9I CCNGG 2 cut(s) 602, 858
Mva1269I GAATGC 1 cut(s) 1186
MvaI CCWGG 1 cut(s) 858
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 544, 1073, 1352
NciI CCSGG 1 cut(s) 602
NcoI CCATGG 1 cut(s) 398
NdeII GATC 3 cut(s) 333, 565, 1168
NlaIII CATG 9 cut(s) 91, 328, 402, 488, 494, 547, 625, 835, 930
NlaIV GGNNCC 4 cut(s) 205, 238, 441, 1140
NmuCI GTSAC 3 cut(s) 83, 139, 148
NsbI TGCGCA 1 cut(s) 1048
NsiI ATGCAT 1 cut(s) 877
NspI RCATGY 1 cut(s) 930
PaeI GCATGC 1 cut(s) 930
PagI TCATGA 1 cut(s) 324
PceI AGGCCT 1 cut(s) 1322
PciSI GCTCTTC 1 cut(s) 513
PctI GAATGC 1 cut(s) 1186
PfeI GAWTC 4 cut(s) 91, 294, 625, 974
PkrI GCNGC 5 cut(s) 50, 117, 347, 510, 671
PleI GAGTC 5 cut(s) 283, 601, 720, 839, 1108
PpsI GAGTC 5 cut(s) 283, 601, 720, 839, 1108
PpuMI RGGWCCY 1 cut(s) 740
PshAI GACNNNNGTC 1 cut(s) 795
PshBI ATTAAT 1 cut(s) 1415
Psp1406I AACGTT 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 856
PspEI GGTNACC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 4 cut(s) 205, 238, 441, 1140
PspPI GGNCC 1 cut(s) 740
PspPPI RGGWCCY 1 cut(s) 740
RsaI GTAC 2 cut(s) 383, 1140
RsaNI GTAC 2 cut(s) 382, 1139
RseI CAYNNNNRTG 3 cut(s) 59, 489, 1330
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 6 cut(s) 249, 314, 612, 1224, 1278, 1415
SatI GCNGC 5 cut(s) 49, 116, 346, 509, 670
Sau3AI GATC 3 cut(s) 333, 565, 1168
Sau96I GGNCC 1 cut(s) 740
SchI GAGTC 5 cut(s) 284, 602, 721, 839, 1108
ScrFI CCNGG 2 cut(s) 602, 858
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 4 cut(s) 384, 438, 666, 884
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 740
SmiMI CAYNNNNRTG 3 cut(s) 59, 489, 1330
SmlI CTYRAG 2 cut(s) 368, 611
SmoI CTYRAG 2 cut(s) 368, 611
SphI GCATGC 1 cut(s) 930
Sse9I AATT 5 cut(s) 747, 1000, 1108, 1340, 1394
SseBI AGGCCT 1 cut(s) 1322
SsiI CCGC 4 cut(s) 115, 772, 930, 1101
SspMI CTAG 5 cut(s) 59, 119, 165, 525, 842
StuI AGGCCT 1 cut(s) 1322
StyD4I CCNGG 2 cut(s) 600, 856
StyI CCWWGG 2 cut(s) 398, 524
TaaI ACNGT 3 cut(s) 475, 552, 797
TaiI ACGT 2 cut(s) 578, 761
TaqI TCGA 6 cut(s) 282, 432, 591, 1112, 1119, 1389
TasI AATT 5 cut(s) 747, 1000, 1108, 1340, 1394
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 4 cut(s) 91, 294, 625, 974
Tru1I TTAA 6 cut(s) 249, 314, 612, 1224, 1278, 1415
Tru9I TTAA 6 cut(s) 249, 314, 612, 1224, 1278, 1415
TscAI CASTG 4 cut(s) 507, 1083, 1103, 1166
TseFI GTSAC 3 cut(s) 83, 139, 148
TseI GCWGC 4 cut(s) 48, 345, 508, 669
Tsp45I GTSAC 3 cut(s) 83, 139, 148
TspDTI ATGAA 9 cut(s) 17, 104, 214, 447, 507, 638, 848, 1322, 1377
TspRI CASTG 4 cut(s) 507, 1083, 1103, 1166
Vha464I CTTAAG 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 740
VspI ATTAAT 1 cut(s) 1415
XapI RAATTY 3 cut(s) 1000, 1108, 1394
XceI RCATGY 1 cut(s) 930
XcmI CCANNNNNNNNNTGG 2 cut(s) 214, 550
XmaJI CCTAGG 1 cut(s) 524
XspI CTAG 5 cut(s) 59, 119, 165, 525, 842
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.