Rorug01G0456800

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001004
Physical Location & Seq
Reverse (-)
55155575 .. 55156808
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0456800.1

Sequence Viewer

Length: 1122 bp
ATGGGTGGAGGAGCAAGGTCTCGGGCGAGGGCCAAGAAGAGAGCGGAGGAGAGTAGGAAAGCCTACGAGGCTCGGGAAAGGAAGAAACCCGACGAGGCTGAACCATTGCTGTATCTATGCACTTTCGAGATCTACCGTGGAGGTTTAGCTGGATACCGTGTCCAGGTCATCAGATTGAGCGACTTGTTCATTCCTTCCGATACTCCCATCACTATATTTTGCCCCAAATCTCAAGCCCCCAAATCCAACTCCACCGAGGTGCTACGACAATTTGCTTTTTTAGACGGCAAACACGTTCCCGGCCATATGGGTTTTGGTGTCTTGGGCTCTCGAATTGTTCTGGCCGGCGGCTGGTTTCTCAATCCGTGGATGAGACACAAACCTAAACCAACCTATGTTTTGGAGACTGATCAGAGTGTGGAACCCAACCCCAGGTTCATCAGCACCAGAGTAGGATATGCGGCTTTTGAGGTATTTGACCCCAAAACCGACCATGTATGGGCTGCTCTCCCCAAGCTTCTAATTAGGAAGCTTCCAATTGGGATTAAAGGGCTTTCTTTATCCTCGTGTGCCGTTGTGGGCACCAAGATCTTGATCACACTTCCGTTAAAGTCTAGGGTGGGAGTAGTCAAGATACTCTGCTTCGACGTGGCTCACCCTGAGAGATCATGGACTACACTTGAAGAACCACCCTGGTGGCAGTTTAATAGTTTTTTCCCCGATTTTTACAACGAGGTTTTAGTTTTAGACTTGGAGGATGACGACTGTGAGAAGCTACTATTTACTTATGATTTTGAATATTGCCAAATACGAGTCTCCAGCATGAAGCTGTCCAATGAAGGTGAACCTAAGTGTATTCAACCGCTAGATGAGATAGATTTGCCTGATGAGTTTAAGAACTTGGATGATTTTTTAGCAACTTCATACAGCTGTGCTCATCTTGGAGGTCGAAGAGTATGCTTTTCATTCGTGCATTTGCTAACACTTTTTGTGTTCACCTTCGAATTTTCCTATTCGATTTCTGGAATATTCTCTGTCAAAGCCCTGGGTCATCGCCTGTTCGAGTACTACTCGAATGAGGAACTTCGTTCTATCATTTTGGGTGGTTGCTTTGTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

373

Amino Acids

42.43

Weight (kDa)

7.06

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 581
AccBSI CCGCTC 1 cut(s) 44
AciI CCGC 4 cut(s) 44, 348, 461, 863
AcoI YGGCCR 2 cut(s) 301, 342
AcsI RAATTY 1 cut(s) 1004
AfaI GTAC 1 cut(s) 1067
AfiI CCNNNNNNNGG 4 cut(s) 163, 351, 432, 499
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 3 cut(s) 683, 797, 860
AjiI CACGTC 1 cut(s) 649
AjnI CCWGG 4 cut(s) 162, 431, 692, 1044
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AleI CACNNNNGTG 2 cut(s) 257, 694
AluBI AGCT 6 cut(s) 149, 517, 532, 775, 829, 930
AluI AGCT 6 cut(s) 149, 517, 532, 775, 829, 930
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 4 cut(s) 24, 367, 398, 820
Ama87I CYCGRG 2 cut(s) 21, 72
AoxI GGCC 3 cut(s) 30, 301, 342
ApeKI GCWGC 1 cut(s) 503
ApoI RAATTY 1 cut(s) 1004
AspS9I GGNCC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 3 cut(s) 647, 854, 988
AsuII TTCGAA 1 cut(s) 1002
AvaI CYCGRG 2 cut(s) 21, 72
BaeGI GKGCMC 1 cut(s) 584
BanI GGYRCC 1 cut(s) 581
BanII GRGCYC 1 cut(s) 329
BauI CACGAG 1 cut(s) 565
Bbv12I GWGCWC 1 cut(s) 937
BbvI GCAGC 1 cut(s) 490
BccI CCATC 1 cut(s) 215
BceAI ACGGC 2 cut(s) 301, 557
BcgI CGANNNNNNTGC 2 cut(s) 939, 973
BciT130I CCWGG 4 cut(s) 164, 433, 694, 1046
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 2 cut(s) 409, 594
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 4 cut(s) 24, 367, 398, 820
BfaI CTAG 2 cut(s) 615, 866
BfuI GTATCC 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 2 cut(s) 129, 588
BisI GCNGC 3 cut(s) 349, 462, 504
BlsI GCNGC 3 cut(s) 350, 463, 505
BmcAI AGTACT 1 cut(s) 1067
Bme1390I CCNGG 5 cut(s) 164, 300, 433, 694, 1046
BmeT110I CYCGRG 2 cut(s) 21, 72
BmgBI CACGTC 1 cut(s) 649
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 2 cut(s) 423, 583
BmrFI CCNGG 5 cut(s) 164, 300, 433, 694, 1046
BplI GAGNNNNNCTC 2 cut(s) 1055, 1087
BpmI CTGGAG 1 cut(s) 802
Bpu14I TTCGAA 1 cut(s) 1002
BpuEI CTTGAG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 593
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 7 cut(s) 136, 255, 365, 431, 692, 1044, 1045
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 351, 432, 499
Bse118I RCCGGY 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 593
BseBI CCWGG 4 cut(s) 164, 433, 694, 1046
BseDI CCNNGG 7 cut(s) 136, 255, 365, 431, 692, 1044, 1045
BseGI GGATG 3 cut(s) 375, 763, 910
BseJI GATNNNNATC 1 cut(s) 593
BseLI CCNNNNNNNGG 4 cut(s) 163, 351, 432, 499
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 651
BseRI GAGGAG 2 cut(s) 24, 62
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 1 cut(s) 490
BshFI GGCC 3 cut(s) 32, 303, 344
BshNI GGYRCC 1 cut(s) 581
BsiHKAI GWGCWC 1 cut(s) 937
BsiHKCI CYCGRG 2 cut(s) 21, 72
BsiSI CCGG 2 cut(s) 300, 345
BslI CCNNNNNNNGG 4 cut(s) 163, 351, 432, 499
BsmAI GTCTC 4 cut(s) 24, 367, 398, 820
BsnI GGCC 3 cut(s) 32, 303, 344
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 2 cut(s) 21, 72
Bsp119I TTCGAA 1 cut(s) 1002
Bsp1286I GDGCHC 3 cut(s) 329, 584, 937
Bsp143I GATC 5 cut(s) 129, 409, 588, 594, 665
BspACI CCGC 4 cut(s) 44, 348, 461, 863
BspANI GGCC 3 cut(s) 32, 303, 344
BspCNI CTCAG 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 423, 583
BspT104I TTCGAA 1 cut(s) 1002
BspT107I GGYRCC 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 24
BsrBI CCGCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 7 cut(s) 136, 255, 365, 431, 692, 1044, 1045
BssMI GATC 5 cut(s) 129, 409, 588, 594, 665
BssSI CACGAG 1 cut(s) 565
Bst2BI CACGAG 1 cut(s) 565
Bst2UI CCWGG 4 cut(s) 164, 433, 694, 1046
Bst4CI ACNGT 3 cut(s) 137, 158, 767
Bst6I CTCTTC 2 cut(s) 32, 946
BstBI TTCGAA 1 cut(s) 1002
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 660, 849
BstDSI CCRYGG 2 cut(s) 136, 365
BstF5I GGATG 3 cut(s) 375, 763, 910
BstKTI GATC 5 cut(s) 132, 412, 591, 597, 668
BstMAI GTCTC 4 cut(s) 24, 367, 398, 820
BstMBI GATC 5 cut(s) 129, 409, 588, 594, 665
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 4 cut(s) 164, 433, 694, 1046
BstSCI CCNGG 5 cut(s) 162, 298, 431, 692, 1044
BstSLI GKGCMC 1 cut(s) 584
BstV1I GCAGC 1 cut(s) 490
BstX2I RGATCY 2 cut(s) 129, 588
BstXI CCANNNNNNTGG 1 cut(s) 696
BstYI RGATCY 2 cut(s) 129, 588
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 3 cut(s) 32, 303, 344
BtgI CCRYGG 2 cut(s) 136, 365
BtgZI GCGATG 1 cut(s) 1037
BtrI CACGTC 1 cut(s) 649
BtsCI GGATG 3 cut(s) 375, 763, 910
Cac8I GCNNGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 1066
CviAII CATG 3 cut(s) 494, 669, 823
CviQI GTAC 1 cut(s) 1066
DdeI CTNAG 2 cut(s) 660, 849
DpnI GATC 5 cut(s) 131, 411, 590, 596, 667
DpnII GATC 5 cut(s) 129, 409, 588, 594, 665
EaeI YGGCCR 2 cut(s) 301, 342
Eam1104I CTCTTC 2 cut(s) 32, 946
EarI CTCTTC 2 cut(s) 32, 946
Eco24I GRGCYC 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 24
Eco88I CYCGRG 2 cut(s) 21, 72
EcoRII CCWGG 4 cut(s) 162, 431, 692, 1044
EcoT38I GRGCYC 1 cut(s) 329
FaeI CATG 3 cut(s) 497, 672, 826
FatI CATG 3 cut(s) 493, 668, 822
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 2 cut(s) 409, 594
Fnu4HI GCNGC 3 cut(s) 349, 462, 504
FokI GGATG 3 cut(s) 382, 770, 917
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 3 cut(s) 349, 462, 504
FspBI CTAG 2 cut(s) 615, 866
GluI GCNGC 3 cut(s) 349, 462, 504
GsuI CTGGAG 1 cut(s) 802
HaeIII GGCC 3 cut(s) 32, 303, 344
HapII CCGG 2 cut(s) 300, 345
Hin1II CATG 3 cut(s) 497, 672, 826
HindIII AAGCTT 2 cut(s) 515, 530
HinfI GANTC 1 cut(s) 813
HpaII CCGG 2 cut(s) 300, 345
HphI GGTGA 3 cut(s) 647, 854, 988
Hpy166II GTNNAC 2 cut(s) 845, 996
Hpy188I TCNGA 3 cut(s) 173, 199, 414
Hpy188III TCNNGA 6 cut(s) 74, 127, 330, 592, 631, 1023
Hpy8I GTNNAC 2 cut(s) 845, 996
Hpy99I CGWCG 2 cut(s) 95, 650
HpyAV CCTTC 3 cut(s) 204, 833, 1009
HpyCH4III ACNGT 3 cut(s) 137, 158, 767
HpyCH4IV ACGT 2 cut(s) 294, 648
HpyCH4V TGCA 2 cut(s) 120, 973
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 660, 849
HpySE526I ACGT 2 cut(s) 294, 648
Hsp92II CATG 3 cut(s) 497, 672, 826
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
Ksp22I TGATCA 2 cut(s) 409, 594
Kzo9I GATC 5 cut(s) 129, 409, 588, 594, 665
LmnI GCTCC 1 cut(s) 11
Lsp1109I GCAGC 1 cut(s) 490
MaeI CTAG 2 cut(s) 615, 866
MaeII ACGT 2 cut(s) 294, 648
MalI GATC 5 cut(s) 131, 411, 590, 596, 667
MbiI CCGCTC 1 cut(s) 44
MboI GATC 5 cut(s) 129, 409, 588, 594, 665
MboII GAAGA 4 cut(s) 49, 94, 695, 963
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 129, 588
MhlI GDGCHC 3 cut(s) 329, 584, 937
MluCI AATT 5 cut(s) 269, 333, 522, 537, 1004
MlyI GAGTC 1 cut(s) 822
MmeI TCCRAC 1 cut(s) 270
MroNI GCCGGC 1 cut(s) 344
MseI TTAA 4 cut(s) 546, 608, 705, 894
MslI CAYNNNNRTG 2 cut(s) 257, 694
MspA1I CMGCKG 1 cut(s) 930
MspI CCGG 2 cut(s) 300, 345
MspR9I CCNGG 5 cut(s) 164, 300, 433, 694, 1046
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 4 cut(s) 164, 433, 694, 1046
MwoI GCNNNNNNNGC 1 cut(s) 68
NaeI GCCGGC 1 cut(s) 346
NciI CCSGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 306
NdeII GATC 5 cut(s) 129, 409, 588, 594, 665
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 3 cut(s) 497, 672, 826
NlaIV GGNNCC 2 cut(s) 423, 583
NspV TTCGAA 1 cut(s) 1002
OliI CACNNNNGTG 2 cut(s) 257, 694
PasI CCCWGGG 1 cut(s) 1045
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PdiI GCCGGC 1 cut(s) 346
PkrI GCNGC 3 cut(s) 350, 463, 505
PleI GAGTC 1 cut(s) 821
PpsI GAGTC 1 cut(s) 821
Psp6I CCWGG 4 cut(s) 162, 431, 692, 1044
PspGI CCWGG 4 cut(s) 162, 431, 692, 1044
PspN4I GGNNCC 2 cut(s) 423, 583
PspPI GGNCC 1 cut(s) 30
PsuI RGATCY 2 cut(s) 129, 588
PvuII CAGCTG 1 cut(s) 930
RsaI GTAC 1 cut(s) 1067
RsaNI GTAC 1 cut(s) 1066
RseI CAYNNNNRTG 2 cut(s) 257, 694
SaqAI TTAA 4 cut(s) 546, 608, 705, 894
SatI GCNGC 3 cut(s) 349, 462, 504
Sau3AI GATC 5 cut(s) 129, 409, 588, 594, 665
Sau96I GGNCC 1 cut(s) 30
ScaI AGTACT 1 cut(s) 1067
SchI GAGTC 1 cut(s) 822
ScrFI CCNGG 5 cut(s) 164, 300, 433, 694, 1046
SduI GDGCHC 3 cut(s) 329, 584, 937
SfuI TTCGAA 1 cut(s) 1002
SmiMI CAYNNNNRTG 2 cut(s) 257, 694
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 5 cut(s) 269, 333, 522, 537, 1004
SsiI CCGC 4 cut(s) 44, 348, 461, 863
SspI AATATT 2 cut(s) 800, 1029
SspMI CTAG 2 cut(s) 615, 866
StyD4I CCNGG 5 cut(s) 162, 298, 431, 692, 1044
TaaI ACNGT 3 cut(s) 137, 158, 767
TaiI ACGT 2 cut(s) 297, 651
TaqI TCGA 8 cut(s) 126, 331, 645, 949, 1002, 1016, 1062, 1073
TasI AATT 5 cut(s) 269, 333, 522, 537, 1004
TatI WGTACW 1 cut(s) 1065
TauI GCSGC 2 cut(s) 351, 464
Tru1I TTAA 4 cut(s) 546, 608, 705, 894
Tru9I TTAA 4 cut(s) 546, 608, 705, 894
TseI GCWGC 1 cut(s) 503
TspDTI ATGAA 6 cut(s) 178, 427, 839, 852, 912, 954
TspGWI ACGGA 2 cut(s) 354, 594
XapI RAATTY 1 cut(s) 1004
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XspI CTAG 2 cut(s) 615, 866
ZrmI AGTACT 1 cut(s) 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.