Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8221948.1

Orthogroup ID

OG0001004

Physical Location & Seq

Genomic Coordinates Forward (+)

189 .. 662

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8221948.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgagaaagagtagtcttagcctgttcaagcctgatgtggagacttgcatgaagtggctagactccaaggaagctggctcggtggtctatgtatcatttggaagcttggccaacctaacaaaggagaaaatggaggaactagcatggggtctaaataatagtaactaccacttcttgtgggtaatcaaagagtcagaaaaggaaaagcttcctatcaatttttttgaggagatatcagagaagggccttgttgtgagttggtgctcccaactgcaagtcctggctcacaaggccgtgggatgctttgttactcactgtggttggaattcgatactcgaagcgttgaacttgggagtaccaatggtggcagtgccgcaatgggcagatcagacaacgaatgctaagtttgtggtggatgtgtggaaagtaggagtgagagtgaagttgaatgagaaaggcctgattacaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

157

Amino Acids

17.72

Weight (kDa)

7.65

Isoelectric Point (pI)

25.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001004)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00390 FvH4_1g00400 FvH4_1g00410 FvH4_1g00420 FvH4_4g11960 FvH4_4g11970
rosa_chinensis	RchiOBHm_Chr2g0084821 RchiOBHm_Chr2g0084831 RchiOBHm_Chr2g0084841 RchiOBHm_Chr2g0084851 RchiOBHm_Chr2g0084901 RchiOBHm_Chr4g0409581 RchiOBHm_Chr4g0409591
rosa_laevigata	RLG00000008551 RLG00000008554 RLG00000015643 RLG00000015645 RLG00000015646 RLG00000015647
rosa_multiflora	Rmu_co8221948.1_g000001 Rmu_sc0001616.1_g000004 Rmu_sc0008771.1_g000006 Rmu_sc0020268.1_g000001 Rmu_sc0023282.1_g000002 Rmu_sc0029001.1_g000001 Rmu_ssc0000436.1_g000005 Rmu_ssc0000436.1_g000007 Rmu_ssc0000436.1_g000009 Rmu_ssc0000436.1_g000012
rosa_roxburghii	Rroxscaffold_2G00155720 Rroxscaffold_2G00155760 Rroxscaffold_2G00155780 Rroxscaffold_2G00155790 Rroxscaffold_5G00354040 Rroxscaffold_5G00354070
rosa_rugosa	Rorug01G0456600 Rorug01G0456800 Rorug01G0456900 Rorug04G0094700 Rorug04G0094900
rosa_samantha	Rh2AG003900 Rh2AG004200 Rh2BG005400 Rh2BG005600 Rh2BG005700 Rh2BG005800 Rh2CG005900 Rh2DG005100 Rh2DG005200 Rh2DG005300 Rh2DG005700 Rh2DG005900 Rh4AG156800 Rh4AG156900 Rh4CG166300 Rh4DG150100
rosa_wichuraiana	Rw2G000420 Rw2G000430 Rw2G000440 Rw2G000450 Rw4G012920 Rw4G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	325
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	28, 346, 448
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	3 cut(s)	74, 105, 208
AluI	AGCT	3 cut(s)	74, 105, 208
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	35
AoxI	GGCC	4 cut(s)	108, 244, 291, 457
ApoI	RAATTY	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	59, 140
BisI	GCNGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	375
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	66, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	66, 294
BseGI	GGATG	2 cut(s)	305, 421
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	242
BshFI	GGCC	4 cut(s)	110, 246, 293, 459
BsiHKAI	GWGCWC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	4 cut(s)	110, 246, 293, 459
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	4 cut(s)	110, 246, 293, 459
BsrDI	GCAATG	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	66, 294
BssMI	GATC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	17, 402
BstDSI	CCRYGG	1 cut(s)	294
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	305, 421
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BsuRI	GGCC	4 cut(s)	110, 246, 293, 459
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	305, 421
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	313, 375
Cac8I	GCNNGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	2 cut(s)	49, 144
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	2 cut(s)	17, 402
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
EaeI	YGGCCR	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	52, 147
FaiI	YATR	3 cut(s)	50, 90, 145
FatI	CATG	2 cut(s)	48, 143
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	2 cut(s)	312, 428
Fsp4HI	GCNGC	1 cut(s)	374
FspBI	CTAG	2 cut(s)	59, 140
GluI	GCNGC	1 cut(s)	374
HaeIII	GGCC	4 cut(s)	110, 246, 293, 459
Hin1II	CATG	2 cut(s)	52, 147
HindIII	AAGCTT	2 cut(s)	103, 206
HinfI	GANTC	2 cut(s)	62, 191
Hpy188I	TCNGA	3 cut(s)	196, 238, 390
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	48, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	17, 402
Hsp92II	CATG	2 cut(s)	52, 147
Kzo9I	GATC	1 cut(s)	385
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	35, 45, 60, 266, 293
LweI	GCATC	1 cut(s)	290
MaeI	CTAG	2 cut(s)	59, 140
MaeIII	GTNAC	2 cut(s)	161, 307
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	266
MlsI	TGGCCA	1 cut(s)	110
MluCI	AATT	2 cut(s)	217, 325
MluNI	TGGCCA	1 cut(s)	110
MlyI	GAGTC	2 cut(s)	56, 200
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	2 cut(s)	127, 220
Mox20I	TGGCCA	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	2 cut(s)	52, 147
PceI	AGGCCT	1 cut(s)	459
PctI	GAATGC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	375
PleI	GAGTC	2 cut(s)	56, 199
PpsI	GAGTC	2 cut(s)	56, 199
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	244
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SatI	GCNGC	1 cut(s)	374
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	2 cut(s)	56, 200
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	4 cut(s)	76, 107, 117, 210
SfaNI	GCATC	1 cut(s)	290
Sse9I	AATT	2 cut(s)	217, 325
SseBI	AGGCCT	1 cut(s)	459
SsiI	CCGC	1 cut(s)	374
SspMI	CTAG	2 cut(s)	59, 140
StuI	AGGCCT	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	329, 336
TasI	AATT	2 cut(s)	217, 325
TauI	GCSGC	1 cut(s)	376
TscAI	CASTG	2 cut(s)	320, 375
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	320, 375
XagI	CCTNNNNNAGG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	2 cut(s)	59, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.