Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001004

Physical Location & Seq

Genomic Coordinates Reverse (-)

424949 .. 438253

Gene Structure 13305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG005700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCAAATCATATATAAACAAACTGAAATTTTGGTTGCATGCCGCATGGAGCCATCCAAGAATTTGGACTTAGCAAGTGGAGAACTGGGTCAGTGTTATGGTCTACCATTGGCTGCTAAGGAACTCGCAGGAATCATTCCCAAACTCATTTGCGAATTAAGAAACAAGAACACCACTACTACTATCTGTACTAGCAATGGTGATCATGCCTCCTCGGTGGAACAGGTTCCACCCAAGCTCAAGCTCAAGCTCGTGATTTATGACTCAGGGATGCCGTGGGTTTTGGATATAGCGCGACAACAAGGCATAGAAGGAGCTCCTTTTTTTACACAGTCATGCGCGGTTGCATCCGTCTACTATCACTTCCGTGAAGGGGCATGTAAGATAAGTACTACTACTCCCACCTCTGGTTTTGATGACGACTCAGAAGCTGCTAATCATGGAAGATCATCACCATCTACCGACACAATATTATTGCCGGCTATGCCACCACTTGGAGTCAATGACTTACCATCTTTTCTATGTGATACTCATTCCTATCCAGTTTTATGTAAACATACCCTGAATCAATTCTCCAATTTCCGGGAAGCAAAATGGCAATTGTACAACACTTTTGATACGTTAGAACATGAGGTAAGTACCAGTACTGCTTATGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

220

Amino Acids

24.2

Weight (kDa)

5.47

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001004)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00390 FvH4_1g00400 FvH4_1g00410 FvH4_1g00420 FvH4_4g11960 FvH4_4g11970
rosa_chinensis	RchiOBHm_Chr2g0084821 RchiOBHm_Chr2g0084831 RchiOBHm_Chr2g0084841 RchiOBHm_Chr2g0084851 RchiOBHm_Chr2g0084901 RchiOBHm_Chr4g0409581 RchiOBHm_Chr4g0409591
rosa_laevigata	RLG00000008551 RLG00000008554 RLG00000015643 RLG00000015645 RLG00000015646 RLG00000015647
rosa_multiflora	Rmu_co8221948.1_g000001 Rmu_sc0001616.1_g000004 Rmu_sc0008771.1_g000006 Rmu_sc0020268.1_g000001 Rmu_sc0023282.1_g000002 Rmu_sc0029001.1_g000001 Rmu_ssc0000436.1_g000005 Rmu_ssc0000436.1_g000007 Rmu_ssc0000436.1_g000009 Rmu_ssc0000436.1_g000012
rosa_roxburghii	Rroxscaffold_2G00155720 Rroxscaffold_2G00155760 Rroxscaffold_2G00155780 Rroxscaffold_2G00155790 Rroxscaffold_5G00354040 Rroxscaffold_5G00354070
rosa_rugosa	Rorug01G0456600 Rorug01G0456800 Rorug01G0456900 Rorug04G0094700 Rorug04G0094900
rosa_samantha	Rh2AG003900 Rh2AG004200 Rh2BG005400 Rh2BG005600 Rh2BG005700 Rh2BG005800 Rh2CG005900 Rh2DG005100 Rh2DG005200 Rh2DG005300 Rh2DG005700 Rh2DG005900 Rh4AG156800 Rh4AG156900 Rh4CG166300 Rh4DG150100
rosa_wichuraiana	Rw2G000420 Rw2G000430 Rw2G000440 Rw2G000450 Rw4G012920 Rw4G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccI	GTMKAC	2 cut(s)	103, 354
AccII	CGCG	2 cut(s)	295, 341
AciI	CCGC	2 cut(s)	43, 341
AcsI	RAATTY	2 cut(s)	27, 61
AfaI	GTAC	5 cut(s)	190, 391, 605, 640, 646
AfiI	CCNNNNNNNGG	4 cut(s)	373, 407, 494, 582
AleI	CACNNNNGTG	1 cut(s)	366
AluBI	AGCT	5 cut(s)	238, 244, 250, 317, 431
AluI	AGCT	5 cut(s)	238, 244, 250, 317, 431
Alw21I	GWGCWC	1 cut(s)	319
AlwNI	CAGNNNCTG	1 cut(s)	431
ApeKI	GCWGC	2 cut(s)	113, 431
ApoI	RAATTY	2 cut(s)	27, 61
Asp700I	GAANNNNTTC	2 cut(s)	225, 569
AspLEI	GCGC	2 cut(s)	295, 341
AsuC2I	CCSGG	1 cut(s)	584
AsuHPI	GGTGA	2 cut(s)	212, 444
BanII	GRGCYC	1 cut(s)	319
BauI	CACGAG	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	100, 418
BccI	CCATC	3 cut(s)	61, 463, 520
BceAI	ACGGC	1 cut(s)	259
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	584
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	3 cut(s)	43, 114, 432
BlsI	GCNGC	3 cut(s)	44, 115, 433
BmcAI	AGTACT	2 cut(s)	391, 646
Bme1390I	CCNGG	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	51, 228
BmrFI	CCNGG	1 cut(s)	584
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	261, 356
BmuI	ACTGGG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	224, 230
BpuMI	CCSGG	1 cut(s)	584
BsaJI	CCNNGG	2 cut(s)	213, 275
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	4 cut(s)	373, 407, 494, 582
Bse118I	RCCGGY	1 cut(s)	478
Bse1I	ACTGG	3 cut(s)	90, 542, 642
Bse3DI	GCAATG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	213, 275
BseGI	GGATG	3 cut(s)	53, 276, 347
BseLI	CCNNNNNNNGG	4 cut(s)	373, 407, 494, 582
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	279, 438
BseNI	ACTGG	3 cut(s)	90, 542, 642
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	100, 418
Bsh1236I	CGCG	2 cut(s)	295, 341
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	2 cut(s)	479, 583
BslI	CCNNNNNNNGG	4 cut(s)	373, 407, 494, 582
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	202, 446
BspACI	CCGC	2 cut(s)	43, 341
BspCNI	CTCAG	2 cut(s)	278, 437
BspFNI	CGCG	2 cut(s)	295, 341
BspLI	GGNNCC	2 cut(s)	51, 228
BsrDI	GCAATG	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	90, 542, 642
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	2 cut(s)	213, 275
BssMI	GATC	2 cut(s)	202, 446
BssSI	CACGAG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	2 cut(s)	40, 480
BstDEI	CTNAG	4 cut(s)	70, 117, 265, 424
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	53, 276, 347
BstFNI	CGCG	2 cut(s)	295, 341
BstHHI	GCGC	2 cut(s)	295, 341
BstKTI	GATC	2 cut(s)	205, 449
BstMBI	GATC	2 cut(s)	202, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNSI	RCATGY	2 cut(s)	42, 381
BstSCI	CCNGG	1 cut(s)	582
BstUI	CGCG	2 cut(s)	295, 341
BstV1I	GCAGC	2 cut(s)	100, 418
BstXI	CCANNNNNNTGG	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	53, 276, 347
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	40, 480
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	2 cut(s)	295, 341
Cfr10I	RCCGGY	1 cut(s)	478
Csp6I	GTAC	5 cut(s)	189, 390, 604, 639, 645
CviAII	CATG	7 cut(s)	39, 46, 206, 336, 378, 440, 629
CviJI	RGCY	8 cut(s)	52, 113, 238, 244, 250, 317, 431, 482
CviKI_1	RGCY	8 cut(s)	52, 113, 238, 244, 250, 317, 431, 482
CviQI	GTAC	5 cut(s)	189, 390, 604, 639, 645
DdeI	CTNAG	4 cut(s)	70, 117, 265, 424
DpnI	GATC	2 cut(s)	204, 448
DpnII	GATC	2 cut(s)	202, 446
Ecl136II	GAGCTC	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	319
FaeI	CATG	7 cut(s)	42, 49, 209, 339, 381, 443, 632
FatI	CATG	7 cut(s)	38, 45, 205, 335, 377, 439, 628
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	2 cut(s)	103, 354
Fnu4HI	GCNGC	3 cut(s)	43, 114, 432
FokI	GGATG	3 cut(s)	40, 283, 334
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	3 cut(s)	43, 114, 432
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	2 cut(s)	294, 340
GluI	GCNGC	3 cut(s)	43, 114, 432
HapII	CCGG	2 cut(s)	479, 583
HhaI	GCGC	2 cut(s)	295, 341
Hin1II	CATG	7 cut(s)	42, 49, 209, 339, 381, 443, 632
Hin6I	GCGC	2 cut(s)	293, 339
HinP1I	GCGC	2 cut(s)	293, 339
HinfI	GANTC	5 cut(s)	132, 263, 422, 498, 565
HpaII	CCGG	2 cut(s)	479, 583
HphI	GGTGA	2 cut(s)	212, 444
Hpy166II	GTNNAC	3 cut(s)	104, 355, 554
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	3 cut(s)	104, 355, 554
HpyAV	CCTTC	2 cut(s)	305, 365
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4IV	ACGT	1 cut(s)	620
HpyCH4V	TGCA	3 cut(s)	4, 38, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpyF3I	CTNAG	4 cut(s)	70, 117, 265, 424
HpySE526I	ACGT	1 cut(s)	620
Hsp92II	CATG	7 cut(s)	42, 49, 209, 339, 381, 443, 632
HspAI	GCGC	2 cut(s)	293, 339
KroI	GCCGGC	1 cut(s)	478
KroNI	GCCGGC	1 cut(s)	480
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	202, 446
LmnI	GCTCC	3 cut(s)	49, 314, 322
Lsp1109I	GCAGC	2 cut(s)	100, 418
LweI	GCATC	2 cut(s)	261, 356
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	620
MalI	GATC	2 cut(s)	204, 448
MboI	GATC	2 cut(s)	202, 446
MboII	GAAGA	1 cut(s)	456
MfeI	CAATTG	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	6 cut(s)	27, 61, 155, 569, 577, 599
MlyI	GAGTC	3 cut(s)	257, 416, 507
MnlI	CCTC	4 cut(s)	220, 223, 415, 625
MroNI	GCCGGC	1 cut(s)	478
MroXI	GAANNNNTTC	2 cut(s)	225, 569
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	2 cut(s)	334, 366
MspI	CCGG	2 cut(s)	479, 583
MspR9I	CCNGG	1 cut(s)	584
MunI	CAATTG	1 cut(s)	599
MvnI	CGCG	2 cut(s)	295, 341
MwoI	GCNNNNNNNGC	1 cut(s)	484
NaeI	GCCGGC	1 cut(s)	480
NciI	CCSGG	1 cut(s)	584
NdeII	GATC	2 cut(s)	202, 446
NgoMIV	GCCGGC	1 cut(s)	478
NlaIII	CATG	7 cut(s)	42, 49, 209, 339, 381, 443, 632
NlaIV	GGNNCC	2 cut(s)	51, 228
NspI	RCATGY	2 cut(s)	42, 381
OliI	CACNNNNGTG	1 cut(s)	366
PaeI	GCATGC	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	480
PdmI	GAANNNNTTC	2 cut(s)	225, 569
PfeI	GAWTC	2 cut(s)	132, 565
PflMI	CCANNNNNTGG	1 cut(s)	494
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	3 cut(s)	44, 115, 433
PleI	GAGTC	3 cut(s)	257, 416, 506
PpsI	GAGTC	3 cut(s)	257, 416, 506
Psp124BI	GAGCTC	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	51, 228
PstNI	CAGNNNCTG	1 cut(s)	431
RsaI	GTAC	5 cut(s)	190, 391, 605, 640, 646
RsaNI	GTAC	5 cut(s)	189, 390, 604, 639, 645
RseI	CAYNNNNRTG	2 cut(s)	334, 366
SacI	GAGCTC	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	3 cut(s)	43, 114, 432
Sau3AI	GATC	2 cut(s)	202, 446
ScaI	AGTACT	2 cut(s)	391, 646
SchI	GAGTC	3 cut(s)	257, 416, 507
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	9 cut(s)	228, 240, 246, 252, 319, 407, 433, 623, 636
SfaNI	GCATC	2 cut(s)	261, 356
SmiMI	CAYNNNNRTG	2 cut(s)	334, 366
SmlI	CTYRAG	2 cut(s)	239, 245
SmoI	CTYRAG	2 cut(s)	239, 245
SphI	GCATGC	1 cut(s)	42
Sse9I	AATT	6 cut(s)	27, 61, 155, 569, 577, 599
SsiI	CCGC	2 cut(s)	43, 341
SspI	AATATT	1 cut(s)	471
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	582
TaaI	ACNGT	1 cut(s)	333
TaiI	ACGT	1 cut(s)	623
TasI	AATT	6 cut(s)	27, 61, 155, 569, 577, 599
TatI	WGTACW	4 cut(s)	188, 389, 603, 644
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	132, 565
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	2 cut(s)	113, 431
TspGWI	ACGGA	2 cut(s)	340, 356
TspRI	CASTG	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	494
XapI	RAATTY	2 cut(s)	27, 61
XceI	RCATGY	2 cut(s)	42, 381
XmiI	GTMKAC	2 cut(s)	103, 354
XmnI	GAANNNNTTC	2 cut(s)	225, 569
XspI	CTAG	1 cut(s)	192
ZrmI	AGTACT	2 cut(s)	391, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.