Rmu_ssc0000436.1_g000009

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000436.1
OG0001004
Physical Location & Seq
Reverse (-)
28343 .. 30497
2155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000436.1_g000009.1.cds

Sequence Viewer

Length: 1506 bp
atggagagggaatcactgcaaatgggtaccactgctcctcctcaaactcctcaaagcagaaggagtacaagtgctcatgtgctagtgttcccttatccatttcaaggccacatttgcccgatggttgaattctccaaacgccttgcctcaaagggtgttagggtcaccgtcgtgatcacaaccatttctgcagccaccatgtccatgaagcagttgctagcagctcaacccaaaaataagacctctttcagggtggagatcatctctgatggctccgaacaccttcaaaagtcggaaaacaaagacgaagttttcaatagggtagctacgcaaaacttatctagcctcatctccaacatcaagaacaagaaggatcacgcgtcggacaatgatagtagtgatgaagatgaggatgactacccactcaagtgcgtcatttaccactcagccatgccatgggtgttagacatagcgcgacgacatggcatagatggagctccattttttacgtgtgcagctgcggttactgccatctttcatcatttctatgaaggagtattgaagattccttcaaaagatgctgcagctaaaacatctaataacccaatgctaatgccttccatgcctggaccgctagggttcaatgatctaccatcgtttctatctgacgttgatgcctactcaagttttcttaactctaccatgaatcaattctccaatatcgccgaagtaaaatggatctttcacaacacttgcgagaagttggagaaacaggtacttgaatggatggcaagtcaggactggccggttaaaacaataggaccaacaattccatcatcgtttttggacaaacgattgggggatgagaaagattatagtctgagcctgttcaagcctgatcatgtggagacttgcatgaagtggctagactccaaggaaactggctcggtggtttatgtatcgtttggaagcttggcaaacctaacgaaggagcaaatggaagaactagcatggggcttaaacaatagcaactaccacttcttgtgggtaatcaaagagtcagaaaagcaaaagcttccgatcaatttcttcgaggagatatcagagaagggtcttgttgtgagttggtgctcccagcttcgagtcttggcccataaggccgtgggatgctttgttactcattgtggatggaattcaacacttgaggcattgagcttgggagtgccgatggtgacattgccgcaatttgctgatcaaacaacgaatgctaagtttattgcagatgtgtggaaagtaggagtgagagtaaagttgaatgagaaagggtttataacaaaagaggaactagaaatgcgtgttaagcaggttatggacaaggaggtgggggtggagattagaaaggcttcattaatttggaaggagttggctaaggaggccgtggatgaaggaggaagttccgacaggaacattgaggagtttgcggcacaacttcgattattatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

501

Amino Acids

56.25

Weight (kDa)

5.96

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1331
Acc36I ACCTGC 1 cut(s) 1354
Acc65I GGTACC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 456
AccII CGCG 2 cut(s) 380, 475
AciI CCGC 4 cut(s) 521, 632, 1241, 1481
AclWI GGATC 2 cut(s) 381, 746
AcoI YGGCCR 1 cut(s) 803
AcsI RAATTY 2 cut(s) 128, 1192
AfaI GTAC 3 cut(s) 28, 67, 777
AfiI CCNNNNNNNGG 4 cut(s) 104, 249, 456, 988
AflIII ACRYGT 2 cut(s) 378, 509
AjnI CCWGG 1 cut(s) 625
AleI CACNNNNGTG 2 cut(s) 170, 427
AluBI AGCT 9 cut(s) 224, 326, 497, 518, 587, 972, 1075, 1138, 1215
AluI AGCT 9 cut(s) 224, 326, 497, 518, 587, 972, 1075, 1138, 1215
Alw21I GWGCWC 3 cut(s) 76, 499, 1133
Alw26I GTCTC 1 cut(s) 902
AlwI GGATC 2 cut(s) 381, 746
AoxI GGCC 5 cut(s) 106, 803, 1149, 1158, 1434
ApeKI GCWGC 6 cut(s) 191, 221, 515, 518, 581, 584
ApoI RAATTY 2 cut(s) 128, 1192
AseI ATTAAT 1 cut(s) 1409
Asp700I GAANNNNTTC 3 cut(s) 282, 710, 1402
Asp718I GGTACC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 3 cut(s) 629, 821, 1150
AsuHPI GGTGA 2 cut(s) 157, 1243
AsuNHI GCTAGC 1 cut(s) 217
AvaII GGWCC 2 cut(s) 629, 821
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 3 cut(s) 76, 499, 1133
BbvI GCAGC 6 cut(s) 203, 233, 505, 527, 568, 596
BccI CCATC 9 cut(s) 115, 263, 485, 539, 661, 781, 841, 1182, 1222
BceAI ACGGC 2 cut(s) 1145, 1421
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 3 cut(s) 174, 898, 1252
BcoDI GTCTC 1 cut(s) 902
BfaI CTAG 7 cut(s) 83, 218, 342, 635, 926, 1007, 1346
BfmI CTRYAG 2 cut(s) 189, 582
BfuAI ACCTGC 1 cut(s) 1354
BglI GCCNNNNNGGC 1 cut(s) 1157
BisI GCNGC 8 cut(s) 192, 222, 516, 519, 582, 585, 1241, 1482
BlsI GCNGC 8 cut(s) 193, 223, 517, 520, 583, 586, 1242, 1483
Bme1390I CCNGG 1 cut(s) 627
Bme18I GGWCC 2 cut(s) 629, 821
BmgT120I GGNCC 3 cut(s) 629, 821, 1150
BmiI GGNNCC 2 cut(s) 28, 274
BmrFI CCNGG 1 cut(s) 627
BmsI GCATC 3 cut(s) 568, 664, 1157
BmtI GCTAGC 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 248, 280
Bpu10I CCTNAGC 1 cut(s) 1428
BpuEI CTTGAG 3 cut(s) 410, 667, 1223
BsaAI YACGTR 1 cut(s) 510
BsaBI GATNNNNATC 1 cut(s) 1498
BsaJI CCNNGG 4 cut(s) 455, 933, 1161, 1437
BsaXI ACNNNNNCTCC 8 cut(s) 19, 22, 49, 52, 55, 85, 1290, 1320
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 249, 456, 988
Bse118I RCCGGY 1 cut(s) 805
Bse1I ACTGG 2 cut(s) 806, 946
Bse3DI GCAATG 1 cut(s) 1235
Bse8I GATNNNNATC 1 cut(s) 1498
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 4 cut(s) 455, 933, 1161, 1437
BseGI GGATG 6 cut(s) 418, 792, 868, 1172, 1193, 1447
BseJI GATNNNNATC 1 cut(s) 1498
BseLI CCNNNNNNNGG 4 cut(s) 104, 249, 456, 988
BseMI GCAATG 1 cut(s) 1235
BseMII CTCAG 2 cut(s) 459, 872
BseNI ACTGG 2 cut(s) 806, 946
BseRI GAGGAG 5 cut(s) 27, 30, 39, 1109, 1487
BseXI GCAGC 6 cut(s) 203, 233, 505, 527, 568, 596
BseYI CCCAGC 1 cut(s) 1134
BsgI GTGCAG 1 cut(s) 534
Bsh1236I CGCG 2 cut(s) 380, 475
BshFI GGCC 5 cut(s) 108, 805, 1151, 1160, 1436
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 3 cut(s) 76, 499, 1133
BsiSI CCGG 1 cut(s) 806
BslI CCNNNNNNNGG 4 cut(s) 104, 249, 456, 988
BsmAI GTCTC 1 cut(s) 902
BsmI GAATGC 1 cut(s) 1270
BsnI GGCC 5 cut(s) 108, 805, 1151, 1160, 1436
Bsp1286I GDGCHC 3 cut(s) 76, 499, 1133
Bsp143I GATC 8 cut(s) 174, 258, 373, 646, 738, 898, 1080, 1252
Bsp19I CCATGG 1 cut(s) 455
BspACI CCGC 4 cut(s) 521, 632, 1241, 1481
BspANI GGCC 5 cut(s) 108, 805, 1151, 1160, 1436
BspCNI CTCAG 2 cut(s) 458, 873
BspFNI CGCG 2 cut(s) 380, 475
BspLI GGNNCC 2 cut(s) 28, 274
BspMAI CTGCAG 2 cut(s) 193, 586
BspMI ACCTGC 1 cut(s) 1354
BspOI GCTAGC 1 cut(s) 221
BspPI GGATC 2 cut(s) 381, 746
BspT107I GGYRCC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 1235
BsrFI RCCGGY 1 cut(s) 805
BsrI ACTGG 2 cut(s) 806, 946
BssAI RCCGGY 1 cut(s) 805
BssECI CCNNGG 4 cut(s) 455, 933, 1161, 1437
BssMI GATC 8 cut(s) 174, 258, 373, 646, 738, 898, 1080, 1252
BssT1I CCWWGG 2 cut(s) 455, 933
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 4 cut(s) 445, 881, 1269, 1428
BstDSI CCRYGG 3 cut(s) 455, 1161, 1437
BstEII GGTNACC 1 cut(s) 163
BstENI CCTNNNNNAGG 2 cut(s) 247, 986
BstF5I GGATG 6 cut(s) 418, 792, 868, 1172, 1193, 1447
BstFNI CGCG 2 cut(s) 380, 475
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 8 cut(s) 177, 261, 376, 649, 741, 901, 1083, 1255
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 8 cut(s) 174, 258, 373, 646, 738, 898, 1080, 1252
BstMWI GCNNNNNNNGC 7 cut(s) 114, 527, 622, 631, 1157, 1360, 1433
BstNI CCWGG 1 cut(s) 627
BstPI GGTNACC 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 625
BstSFI CTRYAG 2 cut(s) 189, 582
BstUI CGCG 2 cut(s) 380, 475
BstV1I GCAGC 6 cut(s) 203, 233, 505, 527, 568, 596
BstX2I RGATCY 1 cut(s) 738
BstYI RGATCY 1 cut(s) 738
BsuRI GGCC 5 cut(s) 108, 805, 1151, 1160, 1436
BtgI CCRYGG 3 cut(s) 455, 1161, 1437
BtsCI GGATG 6 cut(s) 418, 792, 868, 1172, 1193, 1447
BtsI GCAGTG 2 cut(s) 14, 30
BtsIMutI CAGTG 2 cut(s) 14, 30
BveI ACCTGC 1 cut(s) 1354
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 805
Cfr13I GGNCC 3 cut(s) 629, 821, 1150
CseI GACGC 2 cut(s) 369, 421
Csp6I GTAC 3 cut(s) 27, 66, 776
CviQI GTAC 3 cut(s) 27, 66, 776
DdeI CTNAG 4 cut(s) 445, 881, 1269, 1428
DpnI GATC 8 cut(s) 176, 260, 375, 648, 740, 900, 1082, 1254
DpnII GATC 8 cut(s) 174, 258, 373, 646, 738, 898, 1080, 1252
EaeI YGGCCR 1 cut(s) 803
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 455, 933
Eco24I GRGCYC 1 cut(s) 499
Eco32I GATATC 1 cut(s) 1101
Eco47I GGWCC 2 cut(s) 629, 821
Eco53kI GAGCTC 1 cut(s) 497
Eco91I GGTNACC 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 497
EcoNI CCTNNNNNAGG 2 cut(s) 247, 986
EcoO65I GGTNACC 1 cut(s) 163
EcoRI GAATTC 2 cut(s) 128, 1192
EcoRII CCWGG 1 cut(s) 625
EcoRV GATATC 1 cut(s) 1101
EcoT14I CCWWGG 2 cut(s) 455, 933
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 2 cut(s) 455, 933
FbaI TGATCA 3 cut(s) 174, 898, 1252
Fnu4HI GCNGC 8 cut(s) 192, 222, 516, 519, 582, 585, 1241, 1482
FokI GGATG 6 cut(s) 425, 799, 875, 1179, 1200, 1454
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 8 cut(s) 192, 222, 516, 519, 582, 585, 1241, 1482
FspBI CTAG 7 cut(s) 83, 218, 342, 635, 926, 1007, 1346
GlaI GCGC 1 cut(s) 474
GluI GCNGC 8 cut(s) 192, 222, 516, 519, 582, 585, 1241, 1482
GsaI CCCAGC 1 cut(s) 1138
HaeIII GGCC 5 cut(s) 108, 805, 1151, 1160, 1436
HapII CCGG 1 cut(s) 806
HgaI GACGC 2 cut(s) 369, 421
HhaI GCGC 1 cut(s) 475
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HindIII AAGCTT 2 cut(s) 970, 1073
HinfI GANTC 6 cut(s) 11, 565, 706, 929, 1058, 1143
HpaII CCGG 1 cut(s) 806
HphI GGTGA 2 cut(s) 157, 1243
Hpy188III TCNNGA 4 cut(s) 172, 361, 797, 1503
Hpy99I CGWCG 3 cut(s) 173, 385, 480
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 509, 669
HpyCH4V TGCA 6 cut(s) 19, 191, 515, 584, 915, 1280
HpyF10VI GCNNNNNNNGC 7 cut(s) 114, 527, 622, 631, 1157, 1360, 1433
HpyF3I CTNAG 4 cut(s) 445, 881, 1269, 1428
HpySE526I ACGT 2 cut(s) 509, 669
HspAI GCGC 1 cut(s) 473
KpnI GGTACC 1 cut(s) 30
Ksp22I TGATCA 3 cut(s) 174, 898, 1252
Kzo9I GATC 8 cut(s) 174, 258, 373, 646, 738, 898, 1080, 1252
LmnI GCTCC 6 cut(s) 40, 278, 494, 502, 991, 1136
Lsp1109I GCAGC 6 cut(s) 203, 233, 505, 527, 568, 596
LweI GCATC 3 cut(s) 568, 664, 1157
MaeI CTAG 7 cut(s) 83, 218, 342, 635, 926, 1007, 1346
MaeII ACGT 2 cut(s) 509, 669
MaeIII GTNAC 4 cut(s) 163, 523, 1174, 1231
MalI GATC 8 cut(s) 176, 260, 375, 648, 740, 900, 1082, 1254
MboI GATC 8 cut(s) 174, 258, 373, 646, 738, 898, 1080, 1252
MboII GAAGA 4 cut(s) 416, 574, 1013, 1081
MflI RGATCY 1 cut(s) 738
MhlI GDGCHC 3 cut(s) 76, 499, 1133
MluCI AATT 7 cut(s) 128, 710, 828, 1084, 1192, 1244, 1410
MluI ACGCGT 1 cut(s) 378
MlyI GAGTC 3 cut(s) 923, 1067, 1152
MmeI TCCRAC 5 cut(s) 273, 363, 378, 744, 1482
MroXI GAANNNNTTC 3 cut(s) 282, 710, 1402
MseI TTAA 5 cut(s) 693, 810, 1019, 1359, 1409
MslI CAYNNNNRTG 4 cut(s) 170, 203, 427, 546
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 1270
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 2 cut(s) 380, 475
MwoI GCNNNNNNNGC 7 cut(s) 114, 527, 622, 631, 1157, 1360, 1433
NcoI CCATGG 1 cut(s) 455
NdeII GATC 8 cut(s) 174, 258, 373, 646, 738, 898, 1080, 1252
NheI GCTAGC 1 cut(s) 217
NlaIV GGNNCC 2 cut(s) 28, 274
NmuCI GTSAC 2 cut(s) 163, 1231
OliI CACNNNNGTG 2 cut(s) 170, 427
PctI GAATGC 1 cut(s) 1270
PdmI GAANNNNTTC 3 cut(s) 282, 710, 1402
PfeI GAWTC 3 cut(s) 11, 565, 706
PflMI CCANNNNNTGG 1 cut(s) 456
PkrI GCNGC 8 cut(s) 193, 223, 517, 520, 583, 586, 1242, 1483
PleI GAGTC 3 cut(s) 923, 1066, 1151
PpsI GAGTC 3 cut(s) 923, 1066, 1151
Ppu21I YACGTR 1 cut(s) 510
PshBI ATTAAT 1 cut(s) 1409
PsiI TTATAA 1 cut(s) 1331
Psp124BI GAGCTC 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 625
PspEI GGTNACC 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 1134
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 2 cut(s) 28, 274
PspPI GGNCC 3 cut(s) 629, 821, 1150
PstI CTGCAG 2 cut(s) 193, 586
PsuI RGATCY 1 cut(s) 738
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 3 cut(s) 28, 67, 777
RsaNI GTAC 3 cut(s) 27, 66, 776
RseI CAYNNNNRTG 4 cut(s) 170, 203, 427, 546
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 5 cut(s) 693, 810, 1019, 1359, 1409
SatI GCNGC 8 cut(s) 192, 222, 516, 519, 582, 585, 1241, 1482
Sau3AI GATC 8 cut(s) 174, 258, 373, 646, 738, 898, 1080, 1252
Sau96I GGNCC 3 cut(s) 629, 821, 1150
SchI GAGTC 3 cut(s) 923, 1067, 1152
ScrFI CCNGG 1 cut(s) 627
SduI GDGCHC 3 cut(s) 76, 499, 1133
SfaNI GCATC 3 cut(s) 568, 664, 1157
SfcI CTRYAG 2 cut(s) 189, 582
SfiI GGCCNNNNNGGCC 1 cut(s) 1157
SinI GGWCC 2 cut(s) 629, 821
SmiMI CAYNNNNRTG 4 cut(s) 170, 203, 427, 546
SmlI CTYRAG 3 cut(s) 425, 682, 1202
SmoI CTYRAG 3 cut(s) 425, 682, 1202
Sse9I AATT 7 cut(s) 128, 710, 828, 1084, 1192, 1244, 1410
SsiI CCGC 4 cut(s) 521, 632, 1241, 1481
SspMI CTAG 7 cut(s) 83, 218, 342, 635, 926, 1007, 1346
SstI GAGCTC 1 cut(s) 499
StyD4I CCNGG 1 cut(s) 625
StyI CCWWGG 2 cut(s) 455, 933
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 2 cut(s) 512, 672
TaqI TCGA 3 cut(s) 1092, 1141, 1492
TasI AATT 7 cut(s) 128, 710, 828, 1084, 1192, 1244, 1410
TatI WGTACW 1 cut(s) 65
TauI GCSGC 2 cut(s) 1243, 1484
TfiI GAWTC 3 cut(s) 11, 565, 706
Tru1I TTAA 5 cut(s) 693, 810, 1019, 1359, 1409
Tru9I TTAA 5 cut(s) 693, 810, 1019, 1359, 1409
TscAI CASTG 2 cut(s) 21, 37
TseFI GTSAC 2 cut(s) 163, 1231
TseI GCWGC 6 cut(s) 191, 221, 515, 518, 581, 584
Tsp45I GTSAC 2 cut(s) 163, 1231
TspDTI ATGAA 8 cut(s) 221, 417, 527, 564, 719, 932, 1395, 1458
TspRI CASTG 2 cut(s) 21, 37
Van91I CCANNNNNTGG 1 cut(s) 456
VpaK11BI GGWCC 2 cut(s) 629, 821
VspI ATTAAT 1 cut(s) 1409
XagI CCTNNNNNAGG 2 cut(s) 247, 986
XapI RAATTY 2 cut(s) 128, 1192
XmnI GAANNNNTTC 3 cut(s) 282, 710, 1402
XspI CTAG 7 cut(s) 83, 218, 342, 635, 926, 1007, 1346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.