FvH4_1g00420

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001004
Physical Location & Seq
Reverse (-)
232060 .. 234107
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00420.t1

Sequence Viewer

Length: 1497 bp
ATGGAAATGGAAATGAAAATGAAAACGGGAAATGCTGAGGCTCAACCTCAGCAAAGTCACGTCCTTGTATTCCCGTTTCCTGTTCAGGGTCACATGAACCCAATGGCTCAATTCGCCAAGCGCCTTGTCTCCAAGGGTCTCAAGGTCACGGTAGTCACTATCATCTCCGCCACGCACCGCTTCCAAGCAGCACCCGAACAACTAAGCTCTTTGGGATTCGATGTCGAACCAATTTCTGACGGCTCTGAATTTGTTCACAGACCCGAATCCATTGACGAAACCACCGAGCGTTTCAGAAGGGTGGTTAAAAAGACTTTAGCCGACCTCATCACCCGGATCCAGAACAAGAGCAAGAGCAAGAAGAAGAATGGTACTAGTGCTCCTCATAACGATGATCATGATGCTGATGATGCCCGCAGCAGCCACCCAGAACTGAAATTCTTGGTGTACCACTCAGGTATGCCATGGGCGTTGGATATAGCGCGACAACACGGCATAGATGGAGCTCCATTCTTCACAAGCTGTGCTGCATACGTAGCCATCTACCAACACTTTCTTCAAGGAGCACTAAAGATTCCCTCAGAAAATGATCGGTCCACTACAACGTTATCACTGCCTTCCATGCCACCACTATGTTTCGATGATCTACCCTCATTTCTCCGTGATTTTGACTCCTATCCAGCTTTCCTTCAACTTTCTCTCAGCCAATACTCCAATATCGGAACACTAAAATGGCTCTTCATTTGCACTTTCCATAAGTTGGAAGAGGAGGTACTGGAATGGATGAGAAATCAAGAGTGGCCGGTACGGACCATAGGACCAACGGTTCCATCAATGTTTTTGGACAAACAGTTGAAGGATGACAAGGAATATGGCCTCACTATGTTCAAACCTAATGTGGAGCTTTGTATGGAGTGGCTAGATTCTAGAGAAACTAGCTCCGTCGTTTATGCATCATTTGGAAGCTTGGCCAGTCTAAAAAAGGATCAGATAGAGGAGCTAGCATGGGGACTGAGGGATATGAACTACAACTTCATGTGGGCGGTTAGAGAATCAGAAATGGAAAAACTTCCTAGTAATTTCTTAGAGGAGACATCAGAGAAGGGTTTGGTTGTGAGCTGGTGCCCTCAGATACAAGTTCTGGCTCACAAAGCTGTGCGATGCTTTGTTACACATTGCGGATGGAATTCCGTTCTCGAAGCATTGAGCTGTGGAGTGCCAATGGTGACACTGCCACATTGGTCTGATCAAGCAACTAATGCCAAATTTGTTGCGGATGTGTGGAAAGTAGGAGTCAGAGTGAAGACGAATGAGAAGGGTATTGCTATAAAAGAAGAAATAACAAAGTGTATCCAGCAAGTTATGGAAGAGGAGAAGGGGATGGAGATGATAAAAGCTTCATTAAGGTGGAAAGAACTAGCTAAAGAGGCAGTCAATGTTGGAGGAAGTTCTGATAAGAATATTGAAGAATTTGTAGCAGAAATTACGCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

499

Amino Acids

56.47

Weight (kDa)

5.77

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 291 - 458 1.9e-29 UDP-glucoronosyl and UDP-glucosyl transferase
Glyco_tran_28_C PF04101 334 - 462 2.8e-07 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1122
AccB7I CCANNNNNTGG 1 cut(s) 760
AccII CGCG 1 cut(s) 484
AciI CCGC 6 cut(s) 168, 178, 415, 1043, 1179, 1274
AclI AACGTT 1 cut(s) 605
AclWI GGATC 3 cut(s) 331, 344, 993
AcoI YGGCCR 2 cut(s) 800, 969
AcsI RAATTY 6 cut(s) 248, 437, 1186, 1265, 1469, 1491
AfaI GTAC 4 cut(s) 373, 449, 774, 807
AfiI CCNNNNNNNGG 2 cut(s) 86, 760
AgsI TTSAA 5 cut(s) 560, 692, 856, 889, 1466
AhlI ACTAGT 1 cut(s) 374
AjiI CACGTC 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AloI GAACNNNNNNTCC 2 cut(s) 810, 842
Alw21I GWGCWC 3 cut(s) 382, 508, 568
Alw26I GTCTC 3 cut(s) 133, 143, 1085
AlwI GGATC 3 cut(s) 331, 344, 993
AoxI GGCC 3 cut(s) 800, 874, 969
ApeKI GCWGC 4 cut(s) 188, 417, 420, 527
ApoI RAATTY 6 cut(s) 248, 437, 1186, 1265, 1469, 1491
Asp700I GAANNNNTTC 2 cut(s) 252, 1068
AspLEI GCGC 2 cut(s) 123, 484
AspS9I GGNCC 3 cut(s) 594, 810, 818
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 322, 1237
AsuNHI GCTAGC 1 cut(s) 1000
AvaII GGWCC 3 cut(s) 594, 810, 818
BaeGI GKGCMC 1 cut(s) 1127
BalI TGGCCA 1 cut(s) 971
BamHI GGATCC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 1122
BanII GRGCYC 1 cut(s) 508
BarI GAAGNNNNNNTAC 2 cut(s) 756, 788
BbsI GAAGAC 1 cut(s) 1310
Bbv12I GWGCWC 3 cut(s) 382, 508, 568
BbvCI CCTCAGC 2 cut(s) 36, 48
BbvI GCAGC 4 cut(s) 200, 429, 432, 514
BccI CCATC 5 cut(s) 494, 548, 838, 1176, 1375
BceAI ACGGC 2 cut(s) 256, 508
BciVI GTATCC 1 cut(s) 1361
BclI TGATCA 2 cut(s) 394, 1246
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 3 cut(s) 133, 143, 1085
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 7 cut(s) 375, 920, 927, 936, 1001, 1074, 1418
BfoI RGCGCY 1 cut(s) 124
BfuI GTATCC 1 cut(s) 1361
BisI GCNGC 4 cut(s) 189, 418, 421, 528
BlsI GCNGC 4 cut(s) 190, 419, 422, 529
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 3 cut(s) 594, 810, 818
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 3 cut(s) 594, 810, 818
BmiI GGNNCC 3 cut(s) 338, 828, 1124
BmrFI CCNGG 1 cut(s) 334
BmsI GCATC 4 cut(s) 391, 400, 962, 1151
BmtI GCTAGC 1 cut(s) 1004
BpiI GAAGAC 1 cut(s) 1310
Bpu10I CCTNAGC 2 cut(s) 36, 48
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 334
BsaAI YACGTR 1 cut(s) 535
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 132, 464
BsaXI ACNNNNNCTCC 4 cut(s) 364, 394, 1284, 1314
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 760
Bse118I RCCGGY 1 cut(s) 802
Bse1I ACTGG 2 cut(s) 780, 972
Bse3DI GCAATG 1 cut(s) 1174
BseDI CCNNGG 2 cut(s) 132, 464
BseGI GGATG 5 cut(s) 789, 865, 1187, 1282, 1386
BseLI CCNNNNNNNGG 2 cut(s) 86, 760
BseMI GCAATG 1 cut(s) 1174
BseMII CTCAG 7 cut(s) 27, 62, 468, 594, 715, 1004, 1142
BseNI ACTGG 2 cut(s) 780, 972
BseRI GAGGAG 5 cut(s) 372, 782, 1010, 1103, 1385
BseSI GKGCMC 1 cut(s) 1127
BseXI GCAGC 4 cut(s) 200, 429, 432, 514
Bsh1236I CGCG 1 cut(s) 484
BshFI GGCC 3 cut(s) 802, 876, 971
BshNI GGYRCC 1 cut(s) 1122
BsiHKAI GWGCWC 3 cut(s) 382, 508, 568
BsiSI CCGG 2 cut(s) 334, 803
BslFI GGGAC 1 cut(s) 1023
BslI CCNNNNNNNGG 2 cut(s) 86, 760
BsmAI GTCTC 3 cut(s) 133, 143, 1085
BsmFI GGGAC 1 cut(s) 1023
BsnI GGCC 3 cut(s) 802, 876, 971
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 4 cut(s) 382, 508, 568, 1127
Bsp143I GATC 6 cut(s) 336, 394, 589, 643, 985, 1246
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 6 cut(s) 168, 178, 415, 1043, 1179, 1274
BspANI GGCC 3 cut(s) 802, 876, 971
BspCNI CTCAG 7 cut(s) 28, 61, 467, 593, 714, 1005, 1141
BspFNI CGCG 1 cut(s) 484
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 3 cut(s) 338, 828, 1124
BspOI GCTAGC 1 cut(s) 1004
BspPI GGATC 3 cut(s) 331, 344, 993
BspQI GCTCTTC 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 1122
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 1174
BsrFI RCCGGY 1 cut(s) 802
BsrI ACTGG 2 cut(s) 780, 972
BssAI RCCGGY 1 cut(s) 802
BssECI CCNNGG 2 cut(s) 132, 464
BssMI GATC 6 cut(s) 336, 394, 589, 643, 985, 1246
BssT1I CCWWGG 2 cut(s) 132, 464
Bst4CI ACNGT 3 cut(s) 151, 826, 852
Bst6I CTCTTC 3 cut(s) 743, 759, 1362
BstAPI GCANNNNNTGC 1 cut(s) 1259
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 415, 1002
BstDEI CTNAG 9 cut(s) 36, 48, 203, 454, 580, 701, 1013, 1084, 1128
BstDSI CCRYGG 1 cut(s) 464
BstF5I GGATG 5 cut(s) 789, 865, 1187, 1282, 1386
BstFNI CGCG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 2 cut(s) 123, 484
BstKTI GATC 6 cut(s) 339, 397, 592, 646, 988, 1249
BstMAI GTCTC 3 cut(s) 133, 143, 1085
BstMBI GATC 6 cut(s) 336, 394, 589, 643, 985, 1246
BstMWI GCNNNNNNNGC 7 cut(s) 113, 410, 536, 622, 1151, 1259, 1427
BstSCI CCNGG 1 cut(s) 332
BstSLI GKGCMC 1 cut(s) 1127
BstSNI TACGTA 1 cut(s) 535
BstUI CGCG 1 cut(s) 484
BstV1I GCAGC 4 cut(s) 200, 429, 432, 514
BstV2I GAAGAC 1 cut(s) 1310
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuI GTATCC 1 cut(s) 1361
BsuRI GGCC 3 cut(s) 802, 876, 971
BtgI CCRYGG 1 cut(s) 464
BtgZI GCGATG 1 cut(s) 1174
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 5 cut(s) 789, 865, 1187, 1282, 1386
BtsI GCAGTG 2 cut(s) 611, 1229
BtsIMutI CAGTG 2 cut(s) 611, 1229
Cac8I GCNNGC 2 cut(s) 415, 1002
CciI TCATGA 1 cut(s) 397
CfoI GCGC 2 cut(s) 123, 484
Cfr10I RCCGGY 1 cut(s) 802
Cfr13I GGNCC 3 cut(s) 594, 810, 818
Csp6I GTAC 4 cut(s) 372, 448, 773, 806
CviAII CATG 6 cut(s) 94, 398, 465, 622, 1005, 1036
CviQI GTAC 4 cut(s) 372, 448, 773, 806
DdeI CTNAG 9 cut(s) 36, 48, 203, 454, 580, 701, 1013, 1084, 1128
DpnI GATC 6 cut(s) 338, 396, 591, 645, 987, 1248
DpnII GATC 6 cut(s) 336, 394, 589, 643, 985, 1246
EaeI YGGCCR 2 cut(s) 800, 969
Eam1104I CTCTTC 3 cut(s) 743, 759, 1362
EarI CTCTTC 3 cut(s) 743, 759, 1362
EciI GGCGGA 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 506
Eco105I TACGTA 1 cut(s) 535
Eco130I CCWWGG 2 cut(s) 132, 464
Eco24I GRGCYC 1 cut(s) 508
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 3 cut(s) 594, 810, 818
Eco53kI GAGCTC 1 cut(s) 506
EcoICRI GAGCTC 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 1186
EcoT14I CCWWGG 2 cut(s) 132, 464
EcoT22I ATGCAT 1 cut(s) 955
EcoT38I GRGCYC 1 cut(s) 508
ErhI CCWWGG 2 cut(s) 132, 464
FaeI CATG 6 cut(s) 97, 401, 468, 625, 1008, 1039
FaqI GGGAC 1 cut(s) 1023
FatI CATG 6 cut(s) 93, 397, 464, 621, 1004, 1035
FauI CCCGC 1 cut(s) 422
FbaI TGATCA 2 cut(s) 394, 1246
Fnu4HI GCNGC 4 cut(s) 189, 418, 421, 528
FokI GGATG 5 cut(s) 796, 872, 1194, 1289, 1393
FriOI GRGCYC 1 cut(s) 508
Fsp4HI GCNGC 4 cut(s) 189, 418, 421, 528
FspBI CTAG 7 cut(s) 375, 920, 927, 936, 1001, 1074, 1418
GlaI GCGC 2 cut(s) 122, 483
GluI GCNGC 4 cut(s) 189, 418, 421, 528
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 3 cut(s) 802, 876, 971
HapII CCGG 2 cut(s) 334, 803
HhaI GCGC 2 cut(s) 123, 484
Hin1II CATG 6 cut(s) 97, 401, 468, 625, 1008, 1039
Hin6I GCGC 2 cut(s) 121, 482
HinP1I GCGC 2 cut(s) 121, 482
HindIII AAGCTT 2 cut(s) 964, 1395
HinfI GANTC 7 cut(s) 216, 266, 574, 671, 923, 1052, 1293
HpaII CCGG 2 cut(s) 334, 803
HphI GGTGA 2 cut(s) 322, 1237
Hpy166II GTNNAC 3 cut(s) 256, 448, 597
Hpy188III TCNNGA 5 cut(s) 340, 398, 794, 927, 1196
Hpy8I GTNNAC 3 cut(s) 256, 448, 597
Hpy99I CGWCG 1 cut(s) 947
HpyAV CCTTC 7 cut(s) 291, 627, 698, 850, 1096, 1309, 1369
HpyCH4III ACNGT 3 cut(s) 151, 826, 852
HpyCH4IV ACGT 3 cut(s) 60, 534, 605
HpyCH4V TGCA 3 cut(s) 530, 747, 953
HpyF10VI GCNNNNNNNGC 7 cut(s) 113, 410, 536, 622, 1151, 1259, 1427
HpyF3I CTNAG 9 cut(s) 36, 48, 203, 454, 580, 701, 1013, 1084, 1128
HpySE526I ACGT 3 cut(s) 60, 534, 605
Hsp92II CATG 6 cut(s) 97, 401, 468, 625, 1008, 1039
HspAI GCGC 2 cut(s) 121, 482
Ksp22I TGATCA 2 cut(s) 394, 1246
Kzo9I GATC 6 cut(s) 336, 394, 589, 643, 985, 1246
LguI GCTCTTC 1 cut(s) 743
LmnI GCTCC 7 cut(s) 385, 503, 511, 563, 901, 944, 997
Lsp1109I GCAGC 4 cut(s) 200, 429, 432, 514
LweI GCATC 4 cut(s) 391, 400, 962, 1151
MaeI CTAG 7 cut(s) 375, 920, 927, 936, 1001, 1074, 1418
MaeII ACGT 3 cut(s) 60, 534, 605
MaeIII GTNAC 6 cut(s) 56, 89, 145, 154, 1168, 1225
MalI GATC 6 cut(s) 338, 396, 591, 645, 987, 1248
MboI GATC 6 cut(s) 336, 394, 589, 643, 985, 1246
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 4 cut(s) 382, 508, 568, 1127
MlsI TGGCCA 1 cut(s) 971
MluNI TGGCCA 1 cut(s) 971
MlyI GAGTC 2 cut(s) 665, 1302
MmeI TCCRAC 3 cut(s) 453, 741, 1420
Mox20I TGGCCA 1 cut(s) 971
Mph1103I ATGCAT 1 cut(s) 955
MroXI GAANNNNTTC 2 cut(s) 252, 1068
MscI TGGCCA 1 cut(s) 971
MseI TTAA 3 cut(s) 306, 1403, 1495
MslI CAYNNNNRTG 4 cut(s) 390, 631, 730, 1405
Msp20I TGGCCA 1 cut(s) 971
MspI CCGG 2 cut(s) 334, 803
MspR9I CCNGG 1 cut(s) 334
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 7 cut(s) 113, 410, 536, 622, 1151, 1259, 1427
NciI CCSGG 1 cut(s) 334
NcoI CCATGG 1 cut(s) 464
NdeII GATC 6 cut(s) 336, 394, 589, 643, 985, 1246
NheI GCTAGC 1 cut(s) 1000
NlaIII CATG 6 cut(s) 97, 401, 468, 625, 1008, 1039
NlaIV GGNNCC 3 cut(s) 338, 828, 1124
NmuCI GTSAC 5 cut(s) 56, 89, 145, 154, 1225
NsiI ATGCAT 1 cut(s) 955
PagI TCATGA 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 743
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdmI GAANNNNTTC 2 cut(s) 252, 1068
PfeI GAWTC 5 cut(s) 216, 266, 574, 923, 1052
PflMI CCANNNNNTGG 1 cut(s) 760
PkrI GCNGC 4 cut(s) 190, 419, 422, 529
PleI GAGTC 2 cut(s) 665, 1301
PpsI GAGTC 2 cut(s) 665, 1301
Ppu21I YACGTR 1 cut(s) 535
Psp124BI GAGCTC 1 cut(s) 508
Psp1406I AACGTT 1 cut(s) 605
PspN4I GGNNCC 3 cut(s) 338, 828, 1124
PspPI GGNCC 3 cut(s) 594, 810, 818
PsuI RGATCY 1 cut(s) 336
RsaI GTAC 4 cut(s) 373, 449, 774, 807
RsaNI GTAC 4 cut(s) 372, 448, 773, 806
RseI CAYNNNNRTG 4 cut(s) 390, 631, 730, 1405
SacI GAGCTC 1 cut(s) 508
SapI GCTCTTC 1 cut(s) 743
SaqAI TTAA 3 cut(s) 306, 1403, 1495
SatI GCNGC 4 cut(s) 189, 418, 421, 528
Sau3AI GATC 6 cut(s) 336, 394, 589, 643, 985, 1246
Sau96I GGNCC 3 cut(s) 594, 810, 818
SchI GAGTC 2 cut(s) 665, 1302
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 4 cut(s) 382, 508, 568, 1127
SfaNI GCATC 4 cut(s) 391, 400, 962, 1151
SinI GGWCC 3 cut(s) 594, 810, 818
SmiMI CAYNNNNRTG 4 cut(s) 390, 631, 730, 1405
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SnaBI TACGTA 1 cut(s) 535
SpeI ACTAGT 1 cut(s) 374
SsiI CCGC 6 cut(s) 168, 178, 415, 1043, 1179, 1274
SspI AATATT 1 cut(s) 1462
SspMI CTAG 7 cut(s) 375, 920, 927, 936, 1001, 1074, 1418
SstI GAGCTC 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 2 cut(s) 132, 464
TaaI ACNGT 3 cut(s) 151, 826, 852
TaiI ACGT 3 cut(s) 63, 537, 608
TaqI TCGA 4 cut(s) 219, 225, 639, 1197
TaqII GACCGA 1 cut(s) 582
TfiI GAWTC 5 cut(s) 216, 266, 574, 923, 1052
Tru1I TTAA 3 cut(s) 306, 1403, 1495
Tru9I TTAA 3 cut(s) 306, 1403, 1495
TscAI CASTG 2 cut(s) 618, 1236
TseFI GTSAC 5 cut(s) 56, 89, 145, 154, 1225
TseI GCWGC 4 cut(s) 188, 417, 420, 527
Tsp45I GTSAC 5 cut(s) 56, 89, 145, 154, 1225
TspDTI ATGAA 7 cut(s) 29, 35, 110, 730, 1024, 1037, 1389
TspGWI ACGGA 4 cut(s) 650, 823, 931, 1180
TspRI CASTG 2 cut(s) 618, 1236
Van91I CCANNNNNTGG 1 cut(s) 760
VpaK11BI GGWCC 3 cut(s) 594, 810, 818
XapI RAATTY 6 cut(s) 248, 437, 1186, 1265, 1469, 1491
XbaI TCTAGA 1 cut(s) 926
XmnI GAANNNNTTC 2 cut(s) 252, 1068
XspI CTAG 7 cut(s) 375, 920, 927, 936, 1001, 1074, 1418
Zsp2I ATGCAT 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.