RchiOBHm_Chr2g0084821

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001004
Physical Location & Seq
Forward (+)
466745 .. 468127
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46039

Sequence Viewer

Length: 831 bp
ATGAAAATGGAGAAAAGATCACAAATGCAAATAGGTGGTGCTCATGTACTAGTGTTTCCTTATCCAGTTCAAGGCCACATTTGCCCGATGGTTGAGTTCTCCAAACGCCTTGGCTCAAAGGGTGTTAGGGTCACTGTAATCATCACAACCGTCTCTGCAGCCACCAAGTCCATGAAGCAACTACTGGCAGCTCAACCCAAAAACACCTCTTTCAGGATCGAGCTCATTTCTGACGGCTCCGAACACCTCCAAAAGTCGGAAACTGCTGAAGAATACCTCGACCGTTTCAGAAGTGTCACTATGCAAAATCTATCCAACCTCATCACCAACATTAAGAACAAGAGTGCTACTCATGCCTTCGTCAACAATGATAGTAGTGATGAAGATGACGACGACTACCCCCTCAAGTGCATCGTTTACCACTCGGGCATGCCCTGGGTGTTAGACGTAGCGCGACAACATGGCATGGATGGAGCTCCATTTTTTACTTGTTCGTCTGTGGTCACTGCCATCTTTCAGCACTTCTATGAGGGAGTGTTCAAGATTCCTTCAAAAGATGCTGCAGCTAGAGCATCTAGTACCACAATGCTAATGCCTTCCATGTCCGCACCCCTAGGGTTGAATGATCTACCATCGTTTCTTTCTGATGTTGATGCCTACCCAACTTATCTTAAACTTACCATGAACCAGTTCTCCAATATTGGAGAAGTTAAATGGATCTTCTATAGCACTTTTGAGAAGTTGGAGGACAAGGTAGTTAAATGGATGGAAAGTCAGGACTGGCCCGTGAAAACAATAGGACCAACAATTCCCTCAACGTTTTTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

276

Amino Acids

30.93

Weight (kDa)

6.17

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 454
AciI CCGC 1 cut(s) 606
AclI AACGTT 1 cut(s) 818
AclWI GGATC 2 cut(s) 224, 725
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 2 cut(s) 48, 580
AfiI CCNNNNNNNGG 3 cut(s) 71, 213, 256
AgsI TTSAA 4 cut(s) 71, 541, 552, 622
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 434
AloI GAACNNNNNNTCC 2 cut(s) 677, 709
AluBI AGCT 4 cut(s) 191, 223, 476, 566
AluI AGCT 4 cut(s) 191, 223, 476, 566
Alw21I GWGCWC 3 cut(s) 43, 225, 478
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 2 cut(s) 224, 725
Ama87I CYCGRG 1 cut(s) 424
AoxI GGCC 2 cut(s) 73, 782
ApeKI GCWGC 4 cut(s) 158, 188, 560, 563
Asp700I GAANNNNTTC 1 cut(s) 689
AspA2I CCTAGG 1 cut(s) 613
AspLEI GCGC 1 cut(s) 454
AspS9I GGNCC 2 cut(s) 783, 800
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 424
AvaII GGWCC 1 cut(s) 800
AvrII CCTAGG 1 cut(s) 613
BanII GRGCYC 2 cut(s) 225, 478
Bbv12I GWGCWC 3 cut(s) 43, 225, 478
BbvI GCAGC 4 cut(s) 170, 200, 547, 575
BccI CCATC 5 cut(s) 82, 464, 518, 640, 760
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 157
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 5 cut(s) 50, 567, 576, 614, 829
BfmI CTRYAG 3 cut(s) 156, 561, 724
BisI GCNGC 4 cut(s) 159, 189, 561, 564
BlnI CCTAGG 1 cut(s) 613
BlsI GCNGC 4 cut(s) 160, 190, 562, 565
Bme1390I CCNGG 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 800
BmeT110I CYCGRG 1 cut(s) 424
BmgT120I GGNCC 2 cut(s) 783, 800
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 4 cut(s) 420, 547, 581, 643
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpuEI CTTGAG 1 cut(s) 389
BsaJI CCNNGG 4 cut(s) 109, 434, 435, 613
BsaXI ACNNNNNCTCC 2 cut(s) 677, 707
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 213, 256
Bse1I ACTGG 4 cut(s) 65, 189, 688, 785
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 4 cut(s) 109, 434, 435, 613
BseGI GGATG 2 cut(s) 475, 771
BseLI CCNNNNNNNGG 3 cut(s) 71, 213, 256
BseNI ACTGG 4 cut(s) 65, 189, 688, 785
BseXI GCAGC 4 cut(s) 170, 200, 547, 575
Bsh1236I CGCG 1 cut(s) 454
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 2 cut(s) 75, 784
BsiEI CGRYCG 1 cut(s) 283
BsiHKAI GWGCWC 3 cut(s) 43, 225, 478
BsiHKCI CYCGRG 1 cut(s) 424
BslI CCNNNNNNNGG 3 cut(s) 71, 213, 256
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
BsnI GGCC 2 cut(s) 75, 784
BsoBI CYCGRG 1 cut(s) 424
Bsp1286I GDGCHC 3 cut(s) 43, 225, 478
Bsp143I GATC 4 cut(s) 17, 216, 625, 717
BspACI CCGC 1 cut(s) 606
BspANI GGCC 2 cut(s) 75, 784
BspFNI CGCG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 238
BspMAI CTGCAG 2 cut(s) 160, 565
BspPI GGATC 2 cut(s) 224, 725
BsrI ACTGG 4 cut(s) 65, 189, 688, 785
BssECI CCNNGG 4 cut(s) 109, 434, 435, 613
BssMI GATC 4 cut(s) 17, 216, 625, 717
BssT1I CCWWGG 2 cut(s) 109, 613
Bst2UI CCWGG 1 cut(s) 436
Bst4CI ACNGT 3 cut(s) 136, 151, 284
BstC8I GCNNGC 1 cut(s) 431
BstENI CCTNNNNNAGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 475, 771
BstFNI CGCG 1 cut(s) 454
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 4 cut(s) 20, 219, 628, 720
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 4 cut(s) 17, 216, 625, 717
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 3 cut(s) 81, 353, 569
BstNI CCWGG 1 cut(s) 436
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 434
BstSFI CTRYAG 3 cut(s) 156, 561, 724
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 4 cut(s) 170, 200, 547, 575
BstX2I RGATCY 1 cut(s) 717
BstYI RGATCY 1 cut(s) 717
BsuRI GGCC 2 cut(s) 75, 784
BtsCI GGATG 2 cut(s) 475, 771
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 2 cut(s) 132, 504
Cac8I GCNNGC 1 cut(s) 431
CfoI GCGC 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 783, 800
Csp6I GTAC 2 cut(s) 47, 579
CviAII CATG 8 cut(s) 44, 172, 353, 430, 461, 466, 601, 682
CviJI RGCY 9 cut(s) 75, 114, 161, 191, 223, 237, 476, 566, 784
CviKI_1 RGCY 9 cut(s) 75, 114, 161, 191, 223, 237, 476, 566, 784
CviQI GTAC 2 cut(s) 47, 579
DpnI GATC 4 cut(s) 19, 218, 627, 719
DpnII GATC 4 cut(s) 17, 216, 625, 717
Ecl136II GAGCTC 2 cut(s) 223, 476
Eco130I CCWWGG 2 cut(s) 109, 613
Eco24I GRGCYC 2 cut(s) 225, 478
Eco47I GGWCC 1 cut(s) 800
Eco53kI GAGCTC 2 cut(s) 223, 476
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 424
EcoICRI GAGCTC 2 cut(s) 223, 476
EcoNI CCTNNNNNAGG 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 434
EcoT14I CCWWGG 2 cut(s) 109, 613
EcoT38I GRGCYC 2 cut(s) 225, 478
ErhI CCWWGG 2 cut(s) 109, 613
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 8 cut(s) 47, 175, 356, 433, 464, 469, 604, 685
FatI CATG 8 cut(s) 43, 171, 352, 429, 460, 465, 600, 681
Fnu4HI GCNGC 4 cut(s) 159, 189, 561, 564
FokI GGATG 2 cut(s) 482, 778
FriOI GRGCYC 2 cut(s) 225, 478
Fsp4HI GCNGC 4 cut(s) 159, 189, 561, 564
FspBI CTAG 5 cut(s) 50, 567, 576, 614, 829
GlaI GCGC 1 cut(s) 453
GluI GCNGC 4 cut(s) 159, 189, 561, 564
HaeIII GGCC 2 cut(s) 75, 784
HhaI GCGC 1 cut(s) 454
Hin1II CATG 8 cut(s) 47, 175, 356, 433, 464, 469, 604, 685
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 1 cut(s) 544
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 364, 418
Hpy188I TCNGA 5 cut(s) 232, 241, 259, 290, 646
Hpy188III TCNNGA 3 cut(s) 214, 541, 776
Hpy8I GTNNAC 2 cut(s) 364, 418
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 3 cut(s) 367, 558, 606
HpyCH4III ACNGT 3 cut(s) 136, 151, 284
HpyCH4IV ACGT 2 cut(s) 447, 818
HpyCH4V TGCA 5 cut(s) 28, 158, 304, 411, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 353, 569
HpySE526I ACGT 2 cut(s) 447, 818
Hsp92II CATG 8 cut(s) 47, 175, 356, 433, 464, 469, 604, 685
HspAI GCGC 1 cut(s) 452
Kzo9I GATC 4 cut(s) 17, 216, 625, 717
LmnI GCTCC 3 cut(s) 242, 473, 481
LpnPI CCDG 8 cut(s) 78, 170, 199, 421, 448, 701, 761, 766
Lsp1109I GCAGC 4 cut(s) 170, 200, 547, 575
LweI GCATC 4 cut(s) 420, 547, 581, 643
MaeI CTAG 5 cut(s) 50, 567, 576, 614, 829
MaeII ACGT 2 cut(s) 447, 818
MaeIII GTNAC 3 cut(s) 130, 295, 502
MalI GATC 4 cut(s) 19, 218, 627, 719
MboI GATC 4 cut(s) 17, 216, 625, 717
MboII GAAGA 3 cut(s) 281, 395, 712
MflI RGATCY 1 cut(s) 717
MhlI GDGCHC 3 cut(s) 43, 225, 478
MluCI AATT 1 cut(s) 807
MmeI TCCRAC 3 cut(s) 237, 339, 723
MnlI CCTC 8 cut(s) 217, 257, 287, 329, 413, 523, 739, 823
MroXI GAANNNNTTC 1 cut(s) 689
MseI TTAA 4 cut(s) 333, 672, 711, 759
MslI CAYNNNNRTG 1 cut(s) 525
MspR9I CCNGG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 436
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 3 cut(s) 81, 353, 569
NdeII GATC 4 cut(s) 17, 216, 625, 717
NlaIII CATG 8 cut(s) 47, 175, 356, 433, 464, 469, 604, 685
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 3 cut(s) 130, 295, 502
NspI RCATGY 1 cut(s) 433
PaeI GCATGC 1 cut(s) 433
PasI CCCWGGG 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 689
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 4 cut(s) 160, 190, 562, 565
Psp124BI GAGCTC 2 cut(s) 225, 478
Psp1406I AACGTT 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 434
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 2 cut(s) 783, 800
PstI CTGCAG 2 cut(s) 160, 565
PsuI RGATCY 1 cut(s) 717
RsaI GTAC 2 cut(s) 48, 580
RsaNI GTAC 2 cut(s) 47, 579
RseI CAYNNNNRTG 1 cut(s) 525
SacI GAGCTC 2 cut(s) 225, 478
SaqAI TTAA 4 cut(s) 333, 672, 711, 759
SatI GCNGC 4 cut(s) 159, 189, 561, 564
Sau3AI GATC 4 cut(s) 17, 216, 625, 717
Sau96I GGNCC 2 cut(s) 783, 800
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 3 cut(s) 43, 225, 478
SfaNI GCATC 4 cut(s) 420, 547, 581, 643
SfcI CTRYAG 3 cut(s) 156, 561, 724
SinI GGWCC 1 cut(s) 800
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SpeI ACTAGT 1 cut(s) 49
SphI GCATGC 1 cut(s) 433
Sse9I AATT 1 cut(s) 807
SsiI CCGC 1 cut(s) 606
SspI AATATT 1 cut(s) 700
SspMI CTAG 5 cut(s) 50, 567, 576, 614, 829
SstI GAGCTC 2 cut(s) 225, 478
StyD4I CCNGG 1 cut(s) 434
StyI CCWWGG 2 cut(s) 109, 613
TaaI ACNGT 3 cut(s) 136, 151, 284
TaiI ACGT 2 cut(s) 450, 821
TaqI TCGA 2 cut(s) 219, 279
TasI AATT 1 cut(s) 807
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 4 cut(s) 333, 672, 711, 759
Tru9I TTAA 4 cut(s) 333, 672, 711, 759
TscAI CASTG 2 cut(s) 139, 511
TseFI GTSAC 3 cut(s) 130, 295, 502
TseI GCWGC 4 cut(s) 158, 188, 560, 563
Tsp45I GTSAC 3 cut(s) 130, 295, 502
TspDTI ATGAA 4 cut(s) 17, 188, 396, 698
TspRI CASTG 2 cut(s) 139, 511
VpaK11BI GGWCC 1 cut(s) 800
XagI CCTNNNNNAGG 1 cut(s) 211
XceI RCATGY 1 cut(s) 433
XmaJI CCTAGG 1 cut(s) 613
XmnI GAANNNNTTC 1 cut(s) 689
XspI CTAG 5 cut(s) 50, 567, 576, 614, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.