Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001004

Physical Location & Seq

Genomic Coordinates Reverse (-)

14803678 .. 14804103

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0094700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGCTGATGGGTGAGAGGAGGGATGAGGCACAACGTTGGACCACAGAACTAACGCCCAAAATGGAGGAAAGGTTGAAGGTGCAGATGGAGAAATCTCGTCGTTTCAGTGTCCATTATTCTAGCCCTGGAGTTTATGAGATCAATTGTTTTCCTTGTCCTCACGGCCTTGCTGCAATACAAGCTGCCTCTGAAAATGTCTATGATTATATTGATAAGTACTTTTGTGTTGATATGTTCAAGAAGAGCTACAGTTTTCCTATCCGGCCGATAACCAATGTTGATACGTCTTCTTCTGAATCTGCTACTGACTGTATATTAGCTCCTCTTGCGAAGAGGCCACCTGGGAGGCCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

119

Amino Acids

13.65

Weight (kDa)

6.72

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001004)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00390 FvH4_1g00400 FvH4_1g00410 FvH4_1g00420 FvH4_4g11960 FvH4_4g11970
rosa_chinensis	RchiOBHm_Chr2g0084821 RchiOBHm_Chr2g0084831 RchiOBHm_Chr2g0084841 RchiOBHm_Chr2g0084851 RchiOBHm_Chr2g0084901 RchiOBHm_Chr4g0409581 RchiOBHm_Chr4g0409591
rosa_laevigata	RLG00000008551 RLG00000008554 RLG00000015643 RLG00000015645 RLG00000015646 RLG00000015647
rosa_multiflora	Rmu_co8221948.1_g000001 Rmu_sc0001616.1_g000004 Rmu_sc0008771.1_g000006 Rmu_sc0020268.1_g000001 Rmu_sc0023282.1_g000002 Rmu_sc0029001.1_g000001 Rmu_ssc0000436.1_g000005 Rmu_ssc0000436.1_g000007 Rmu_ssc0000436.1_g000009 Rmu_ssc0000436.1_g000012
rosa_roxburghii	Rroxscaffold_2G00155720 Rroxscaffold_2G00155760 Rroxscaffold_2G00155780 Rroxscaffold_2G00155790 Rroxscaffold_5G00354040 Rroxscaffold_5G00354070
rosa_rugosa	Rorug01G0456600 Rorug01G0456800 Rorug01G0456900 Rorug04G0094700 Rorug04G0094900
rosa_samantha	Rh2AG003900 Rh2AG004200 Rh2BG005400 Rh2BG005600 Rh2BG005700 Rh2BG005800 Rh2CG005900 Rh2DG005100 Rh2DG005200 Rh2DG005300 Rh2DG005700 Rh2DG005900 Rh4AG156800 Rh4AG156900 Rh4CG166300 Rh4DG150100
rosa_wichuraiana	Rw2G000420 Rw2G000430 Rw2G000440 Rw2G000450 Rw4G012920 Rw4G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	266
AfaI	GTAC	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	79, 241
AjnI	CCWGG	2 cut(s)	127, 343
AluBI	AGCT	5 cut(s)	7, 185, 249, 323, 357
AluI	AGCT	5 cut(s)	7, 185, 249, 323, 357
AoxI	GGCC	4 cut(s)	166, 266, 338, 350
ApeKI	GCWGC	2 cut(s)	173, 185
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	160, 172
BccI	CCATC	2 cut(s)	4, 82
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	129, 345
BfaI	CTAG	3 cut(s)	123, 354, 358
BfmI	CTRYAG	1 cut(s)	250
BisI	GCNGC	2 cut(s)	174, 186
BlsI	GCNGC	2 cut(s)	175, 187
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	129, 345
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmrFI	CCNGG	2 cut(s)	129, 345
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	127, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
BseBI	CCWGG	2 cut(s)	129, 345
BseDI	CCNNGG	2 cut(s)	127, 344
BseGI	GGATG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	34, 315
BseX3I	CGGCCG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	160, 172
BsgI	GTGCAG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	4 cut(s)	168, 268, 340, 352
BsiEI	CGRYCG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	265
BsnI	GGCC	4 cut(s)	168, 268, 340, 352
Bsp143I	GATC	1 cut(s)	141
BspANI	GGCC	4 cut(s)	168, 268, 340, 352
BspQI	GCTCTTC	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	127, 344
BssMI	GATC	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	129, 345
Bst4CI	ACNGT	2 cut(s)	254, 314
Bst6I	CTCTTC	2 cut(s)	239, 329
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMCI	CGRYCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 329
BstNI	CCWGG	2 cut(s)	129, 345
BstSCI	CCNGG	2 cut(s)	127, 343
BstSFI	CTRYAG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	160, 172
BstV2I	GAAGAC	1 cut(s)	282
BstZI	CGGCCG	1 cut(s)	266
BsuRI	GGCC	4 cut(s)	168, 268, 340, 352
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	220
CviQI	GTAC	1 cut(s)	220
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	266
EagI	CGGCCG	1 cut(s)	266
Eam1104I	CTCTTC	2 cut(s)	239, 329
EarI	CTCTTC	2 cut(s)	239, 329
EclXI	CGGCCG	1 cut(s)	266
Eco147I	AGGCCT	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	42
Eco52I	CGGCCG	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	127, 343
FaiI	YATR	5 cut(s)	138, 204, 210, 236, 317
Fnu4HI	GCNGC	2 cut(s)	174, 186
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	174, 186
FspBI	CTAG	3 cut(s)	123, 354, 358
GluI	GCNGC	2 cut(s)	174, 186
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	168, 268, 340, 352
HapII	CCGG	1 cut(s)	265
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	193, 298
Hpy188III	TCNNGA	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	2 cut(s)	254, 314
HpyCH4IV	ACGT	2 cut(s)	37, 287
HpyCH4V	TGCA	2 cut(s)	85, 176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 329
HpySE526I	ACGT	2 cut(s)	37, 287
Kzo9I	GATC	1 cut(s)	141
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	2 cut(s)	4, 328
LpnPI	CCDG	4 cut(s)	114, 141, 278, 330
Lsp1109I	GCAGC	2 cut(s)	160, 172
MaeI	CTAG	3 cut(s)	123, 354, 358
MaeII	ACGT	2 cut(s)	37, 287
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	4 cut(s)	256, 282, 285, 346
MfeI	CAATTG	1 cut(s)	145
MluCI	AATT	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	20
MnlI	CCTC	9 cut(s)	12, 15, 22, 61, 171, 199, 330, 336, 342
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	2 cut(s)	129, 345
MunI	CAATTG	1 cut(s)	145
MvaI	CCWGG	2 cut(s)	129, 345
MwoI	GCNNNNNNNGC	2 cut(s)	182, 329
NdeII	GATC	1 cut(s)	141
PceI	AGGCCT	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	175, 187
Psp1406I	AACGTT	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	127, 343
PspGI	CCWGG	2 cut(s)	127, 343
PspPI	GGNCC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	239
SatI	GCNGC	2 cut(s)	174, 186
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	42
ScaI	AGTACT	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	129, 345
SfcI	CTRYAG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	42
Sse9I	AATT	1 cut(s)	145
SseBI	AGGCCT	1 cut(s)	352
SspMI	CTAG	3 cut(s)	123, 354, 358
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	127, 343
TaaI	ACNGT	2 cut(s)	254, 314
TaiI	ACGT	2 cut(s)	40, 290
TasI	AATT	1 cut(s)	145
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	2 cut(s)	173, 185
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	42
XspI	CTAG	3 cut(s)	123, 354, 358
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.