FvH4_4g11970

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001004
Physical Location & Seq
Forward (+)
15678754 .. 15681297
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11970.t1

Sequence Viewer

Length: 1392 bp
ATGACAGAAAAAATTGGTGGCAAACAAAGTCACATCCTTGTATTCTTTTGGCCAGTTCAAGGTCATATGAACCCAATGCTTCAATTCTCCAAGCGCCTAGCTGCCAAGGGTCAACTTGTTACAATGGTCTCAACCACCCCTGCTAGGAAAACCATGAAACCAGGCTCTTTCGGACGTAATATGAACATCGAACTTATCTCAGATGGCTCCGAACAAGTTCAAGGGATGTCAGAATCTATGGAGAAATCTCATGATCGGTGCCAAATTGAAGTTCAGAAATCTCTAAATGAGCTGATCAAGAACATCAAGAATAGTGAGACAAATGAGCAATACCCGCTCAAGTTCATGGTATACCACTACAGCATGCCTTGGGCTTTGAACATAGCGCGAGAGAATGGCATAGATGCAGGTCCATTTTATACAACTCCGACGTCAGTTAAGACCATATGTTACCAGTATCACAAAGGAATAATGAAGCTTCCTTTAGAAGAGCCGACGACAAAATTGCCTTCCCTCCCACCACTACAACGTGAAGATTTACCATCTTTTCTTTCCAGTACGGATTCTGATACAGATAAATTTTTCATTAAACTTGCCATGAACCAATTCTCAAATTTGAGCGAAGTGAAATGGATCTTTCATAGCACTTTCGAAAAACTGGAACTTGAGGTACTCGAATGGATGACAAACCAGAACTTCCCGGTTAAAGCTATAGGACCTACAATTCCATCAATGTTTTTGGACAAAAGGTTGGAGGATGACATAGACTATGGCTTTAACCTTTTTGAGCCTAATGTGGAGACTTGCATGAAGTGGCTAGACTCGAAGGAAACAGGTTCAGTCGTTTATGCCTCATTTGGAAGTTTAGCCAACTTAACTAAAGAGCAATTTGAAGAACTAGCATGGGGTCTATGTAATAGCTACCACAACTTCTTATGGGTAGTCAGAGAATCAGAAAAGGAAAAGCTTCCCACAAATTTTGAAAACCAGATAGCGGAGAAGGGTCTAGTGGTGACTTGGTGCAAACAGTTACAAGTTTTATCTCACAAGGCTGTGGGATGCTTTCTTACTCACTGTGGATGGAATTCGACTCTTGAAGCGTTGAGCTTGGGGGTACCAATGGTGGGAATGCCACATCGAGCCGATCATCCAACTGTTGCTAAATATGTTAAGGATGTGTGGAAGGTAGGAGTTAAGGTAAAGGTCAACGAGGGCTCTGTGCTGAAAGAAGAAATAAGTGCATGTATTAGGCAAGTCATGGACAAAGACACAGGGATGGAGTTTAGAAAAGCTGCACTAGTTTGGAAGGAATTGGCTAGAGAAGCAGTGGATGATGGCGGAAGCTCTGATAGGAACATTGAGGAATTTGTGGAGAAAATTAAGTCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

464

Amino Acids

52.71

Weight (kDa)

6.06

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 269 - 423 8.4e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 398
Acc65I GGTACC 1 cut(s) 1114
AccB1I GGYRCC 2 cut(s) 258, 1114
AccBSI CCGCTC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 351
AccII CGCG 1 cut(s) 388
AciI CCGC 3 cut(s) 335, 995, 1338
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 1 cut(s) 50
AcsI RAATTY 5 cut(s) 578, 613, 976, 1084, 1364
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 3 cut(s) 559, 672, 1116
AfiI CCNNNNNNNGG 4 cut(s) 59, 144, 994, 1124
AgsI TTSAA 8 cut(s) 59, 83, 221, 269, 379, 893, 983, 1097
AhlI ACTAGT 1 cut(s) 1297
AjnI CCWGG 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 9 cut(s) 101, 292, 478, 710, 921, 967, 1107, 1292, 1344
AluI AGCT 9 cut(s) 101, 292, 478, 710, 921, 967, 1107, 1292, 1344
Alw26I GTCTC 3 cut(s) 133, 311, 794
AlwI GGATC 1 cut(s) 641
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 101, 1292
ApoI RAATTY 5 cut(s) 578, 613, 976, 1084, 1364
Asp700I GAANNNNTTC 3 cut(s) 216, 605, 966
Asp718I GGTACC 1 cut(s) 1114
AspLEI GCGC 2 cut(s) 96, 388
AspS9I GGNCC 2 cut(s) 410, 716
AsuC2I CCSGG 1 cut(s) 701
AsuHPI GGTGA 1 cut(s) 1024
AsuII TTCGAA 1 cut(s) 651
AvaII GGWCC 2 cut(s) 410, 716
BalI TGGCCA 1 cut(s) 52
BanI GGYRCC 2 cut(s) 258, 1114
BanII GRGCYC 1 cut(s) 1217
BbvI GCAGC 2 cut(s) 88, 1279
BccI CCATC 6 cut(s) 197, 550, 736, 1074, 1270, 1328
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 1 cut(s) 701
BcoDI GTCTC 3 cut(s) 133, 311, 794
BcuI ACTAGT 1 cut(s) 1297
BfaI CTAG 7 cut(s) 98, 144, 818, 899, 1007, 1298, 1317
BfmI CTRYAG 2 cut(s) 358, 711
BfoI RGCGCY 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 398
BisI GCNGC 2 cut(s) 102, 1293
BlsI GCNGC 2 cut(s) 103, 1294
Bme1390I CCNGG 2 cut(s) 162, 701
Bme18I GGWCC 2 cut(s) 410, 716
BmgT120I GGNCC 2 cut(s) 410, 716
BmiI GGNNCC 3 cut(s) 208, 260, 1116
BmrFI CCNGG 2 cut(s) 162, 701
BmsI GCATC 2 cut(s) 394, 1049
Bpu14I TTCGAA 1 cut(s) 651
BpuEI CTTGAG 2 cut(s) 323, 686
BpuMI CCSGG 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 105, 368
BsaXI ACNNNNNCTCC 2 cut(s) 1182, 1212
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 144, 994, 1124
Bse1I ACTGG 4 cut(s) 53, 454, 555, 663
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 105, 368
BseLI CCNNNNNNNGG 4 cut(s) 59, 144, 994, 1124
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 4 cut(s) 53, 454, 555, 663
BseXI GCAGC 2 cut(s) 88, 1279
BsgI GTGCAG 1 cut(s) 1278
Bsh1236I CGCG 1 cut(s) 388
BshFI GGCC 1 cut(s) 52
BshNI GGYRCC 2 cut(s) 258, 1114
BsiSI CCGG 1 cut(s) 701
BslI CCNNNNNNNGG 4 cut(s) 59, 144, 994, 1124
BsmAI GTCTC 3 cut(s) 133, 311, 794
BsmI GAATGC 1 cut(s) 1134
BsnI GGCC 1 cut(s) 52
Bso31I GGTCTC 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 651
Bsp1286I GDGCHC 1 cut(s) 1217
Bsp143I GATC 4 cut(s) 253, 294, 633, 1144
BspACI CCGC 3 cut(s) 335, 995, 1338
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 212
BspFNI CGCG 1 cut(s) 388
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 208, 260, 1116
BspMI ACCTGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 641
BspQI GCTCTTC 1 cut(s) 483
BspT104I TTCGAA 1 cut(s) 651
BspT107I GGYRCC 2 cut(s) 258, 1114
BspTNI GGTCTC 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 337
BsrI ACTGG 4 cut(s) 53, 454, 555, 663
BssECI CCNNGG 2 cut(s) 105, 368
BssMI GATC 4 cut(s) 253, 294, 633, 1144
BssNAI GTATAC 1 cut(s) 352
BssNI GRCGYC 1 cut(s) 431
BssT1I CCWWGG 2 cut(s) 105, 368
Bst1107I GTATAC 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 1029, 1076, 1156
Bst6I CTCTTC 1 cut(s) 483
BstACI GRCGYC 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 388
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 2 cut(s) 96, 388
BstKTI GATC 4 cut(s) 256, 297, 636, 1147
BstMAI GTCTC 3 cut(s) 133, 311, 794
BstMBI GATC 4 cut(s) 253, 294, 633, 1144
BstMWI GCNNNNNNNGC 2 cut(s) 334, 1322
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 2 cut(s) 367, 1245
BstSCI CCNGG 2 cut(s) 160, 699
BstSFI CTRYAG 2 cut(s) 358, 711
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 88, 1279
BstX2I RGATCY 1 cut(s) 633
BstYI RGATCY 1 cut(s) 633
BstZ17I GTATAC 1 cut(s) 352
BsuRI GGCC 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 1332
BtsIMutI CAGTG 2 cut(s) 1072, 1332
BveI ACCTGC 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 365
CciI TCATGA 1 cut(s) 250
CfoI GCGC 2 cut(s) 96, 388
Cfr13I GGNCC 2 cut(s) 410, 716
Csp6I GTAC 3 cut(s) 558, 671, 1115
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviAII CATG 9 cut(s) 154, 251, 346, 364, 598, 808, 903, 1242, 1258
CviQI GTAC 3 cut(s) 558, 671, 1115
DdeI CTNAG 1 cut(s) 199
DpnI GATC 4 cut(s) 255, 296, 635, 1146
DpnII GATC 4 cut(s) 253, 294, 633, 1144
EaeI YGGCCR 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
EciI GGCGGA 1 cut(s) 1353
Eco130I CCWWGG 2 cut(s) 105, 368
Eco24I GRGCYC 1 cut(s) 1217
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 410, 716
EcoO109I RGGNCCY 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 1084
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 105, 368
EcoT38I GRGCYC 1 cut(s) 1217
ErhI CCWWGG 2 cut(s) 105, 368
FaeI CATG 9 cut(s) 157, 254, 349, 367, 601, 811, 906, 1245, 1261
FatI CATG 9 cut(s) 153, 250, 345, 363, 597, 807, 902, 1241, 1257
FauI CCCGC 1 cut(s) 342
FauNDI CATATG 2 cut(s) 66, 446
FbaI TGATCA 1 cut(s) 294
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 102, 1293
FriOI GRGCYC 1 cut(s) 1217
Fsp4HI GCNGC 2 cut(s) 102, 1293
FspBI CTAG 7 cut(s) 98, 144, 818, 899, 1007, 1298, 1317
GlaI GCGC 2 cut(s) 95, 387
GluI GCNGC 2 cut(s) 102, 1293
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 1 cut(s) 52
HapII CCGG 1 cut(s) 701
HhaI GCGC 2 cut(s) 96, 388
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 9 cut(s) 157, 254, 349, 367, 601, 811, 906, 1245, 1261
Hin6I GCGC 2 cut(s) 94, 386
HinP1I GCGC 2 cut(s) 94, 386
HincII GTYRAC 3 cut(s) 113, 1207, 1386
HindII GTYRAC 3 cut(s) 113, 1207, 1386
HindIII AAGCTT 2 cut(s) 476, 965
HinfI GANTC 5 cut(s) 233, 563, 821, 950, 1090
HpaII CCGG 1 cut(s) 701
HphI GGTGA 1 cut(s) 1024
Hpy166II GTNNAC 4 cut(s) 113, 352, 1207, 1386
Hpy188III TCNNGA 4 cut(s) 251, 298, 307, 1094
Hpy8I GTNNAC 4 cut(s) 113, 352, 1207, 1386
Hpy99I CGWCG 2 cut(s) 433, 499
HpyAV CCTTC 5 cut(s) 519, 820, 994, 1177, 1300
HpyCH4III ACNGT 3 cut(s) 1029, 1076, 1156
HpyCH4IV ACGT 3 cut(s) 175, 431, 529
HpyCH4V TGCA 5 cut(s) 407, 807, 1023, 1241, 1295
HpyF10VI GCNNNNNNNGC 2 cut(s) 334, 1322
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 3 cut(s) 175, 431, 529
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 9 cut(s) 157, 254, 349, 367, 601, 811, 906, 1245, 1261
HspAI GCGC 2 cut(s) 94, 386
KpnI GGTACC 1 cut(s) 1118
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 4 cut(s) 253, 294, 633, 1144
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 2 cut(s) 88, 1279
LweI GCATC 2 cut(s) 394, 1049
MaeI CTAG 7 cut(s) 98, 144, 818, 899, 1007, 1298, 1317
MaeII ACGT 3 cut(s) 175, 431, 529
MaeIII GTNAC 5 cut(s) 29, 118, 449, 1012, 1029
MalI GATC 4 cut(s) 255, 296, 635, 1146
MbiI CCGCTC 1 cut(s) 337
MboI GATC 4 cut(s) 253, 294, 633, 1144
MboII GAAGA 4 cut(s) 500, 545, 905, 1241
MflI RGATCY 1 cut(s) 633
MhlI GDGCHC 1 cut(s) 1217
MlsI TGGCCA 1 cut(s) 52
MluNI TGGCCA 1 cut(s) 52
MlyI GAGTC 2 cut(s) 815, 1084
MmeI TCCRAC 3 cut(s) 452, 732, 1175
MnlI CCTC 6 cut(s) 524, 661, 748, 862, 1204, 1354
Mox20I TGGCCA 1 cut(s) 52
MroXI GAANNNNTTC 3 cut(s) 216, 605, 966
MscI TGGCCA 1 cut(s) 52
MseI TTAA 9 cut(s) 438, 588, 705, 777, 875, 1170, 1194, 1380, 1390
MslI CAYNNNNRTG 1 cut(s) 1274
Msp20I TGGCCA 1 cut(s) 52
MspI CCGG 1 cut(s) 701
MspR9I CCNGG 2 cut(s) 162, 701
Mva1269I GAATGC 1 cut(s) 1134
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 2 cut(s) 334, 1322
NciI CCSGG 1 cut(s) 701
NdeI CATATG 2 cut(s) 66, 446
NdeII GATC 4 cut(s) 253, 294, 633, 1144
NlaIII CATG 9 cut(s) 157, 254, 349, 367, 601, 811, 906, 1245, 1261
NlaIV GGNNCC 3 cut(s) 208, 260, 1116
NmuCI GTSAC 2 cut(s) 29, 1012
NspI RCATGY 2 cut(s) 367, 1245
NspV TTCGAA 1 cut(s) 651
PaeI GCATGC 1 cut(s) 367
PagI TCATGA 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 483
PctI GAATGC 1 cut(s) 1134
PdmI GAANNNNTTC 3 cut(s) 216, 605, 966
PfeI GAWTC 3 cut(s) 233, 563, 950
PkrI GCNGC 2 cut(s) 103, 1294
PleI GAGTC 2 cut(s) 815, 1084
PpsI GAGTC 2 cut(s) 815, 1084
PpuMI RGGWCCY 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 208, 260, 1116
PspPI GGNCC 2 cut(s) 410, 716
PspPPI RGGWCCY 1 cut(s) 716
PsrI GAACNNNNNNTAC 2 cut(s) 654, 686
PsuI RGATCY 1 cut(s) 633
RsaI GTAC 3 cut(s) 559, 672, 1116
RsaNI GTAC 3 cut(s) 558, 671, 1115
RseI CAYNNNNRTG 1 cut(s) 1274
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 9 cut(s) 438, 588, 705, 777, 875, 1170, 1194, 1380, 1390
SatI GCNGC 2 cut(s) 102, 1293
Sau3AI GATC 4 cut(s) 253, 294, 633, 1144
Sau96I GGNCC 2 cut(s) 410, 716
SchI GAGTC 2 cut(s) 815, 1084
ScrFI CCNGG 2 cut(s) 162, 701
SduI GDGCHC 1 cut(s) 1217
SfaNI GCATC 2 cut(s) 394, 1049
SfcI CTRYAG 2 cut(s) 358, 711
SfuI TTCGAA 1 cut(s) 651
SinI GGWCC 2 cut(s) 410, 716
SmiMI CAYNNNNRTG 1 cut(s) 1274
SmlI CTYRAG 2 cut(s) 338, 665
SmoI CTYRAG 2 cut(s) 338, 665
SpeI ACTAGT 1 cut(s) 1297
SphI GCATGC 1 cut(s) 367
SsiI CCGC 3 cut(s) 335, 995, 1338
SspMI CTAG 7 cut(s) 98, 144, 818, 899, 1007, 1298, 1317
StyD4I CCNGG 2 cut(s) 160, 699
StyI CCWWGG 2 cut(s) 105, 368
TaaI ACNGT 3 cut(s) 1029, 1076, 1156
TaiI ACGT 3 cut(s) 178, 434, 532
TaqI TCGA 6 cut(s) 189, 651, 675, 824, 1088, 1138
TfiI GAWTC 3 cut(s) 233, 563, 950
Tru1I TTAA 9 cut(s) 438, 588, 705, 777, 875, 1170, 1194, 1380, 1390
Tru9I TTAA 9 cut(s) 438, 588, 705, 777, 875, 1170, 1194, 1380, 1390
TscAI CASTG 2 cut(s) 1079, 1332
TseFI GTSAC 2 cut(s) 29, 1012
TseI GCWGC 2 cut(s) 101, 1292
Tsp45I GTSAC 2 cut(s) 29, 1012
TspDTI ATGAA 9 cut(s) 83, 170, 197, 334, 488, 574, 614, 629, 824
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 2 cut(s) 1079, 1332
VpaK11BI GGWCC 2 cut(s) 410, 716
XapI RAATTY 5 cut(s) 578, 613, 976, 1084, 1364
XceI RCATGY 2 cut(s) 367, 1245
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 3 cut(s) 216, 605, 966
XspI CTAG 7 cut(s) 98, 144, 818, 899, 1007, 1298, 1317
ZraI GACGTC 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.