Rmu_sc0001616.1_g000004

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001616.1
OG0001004
Physical Location & Seq
Reverse (-)
8939 .. 11565
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001616.1_g000004.1.cds

Sequence Viewer

Length: 1419 bp
atgaagctggatttggaagaacaaatgggtgctggtgctgctcgtgagagccacattcttgtgtttccttttccggttcaaggtcacatgaacccgatggttcaattcgccaagcggctagtctctaaaggccaaagggtcactatagtcaccacattctctgctagcaaatccgtaccaacactcaatcccacctcgttcgggtccaacctcaaaatggagttcatctcagatggctccgaacaagttaaggattccgaaactattgaggagtctattgagcgtttccgaatctcaatcaccaaatccttaaccaacctcatgatgaagatccggaacagcagcgatgcgtcgcaataccctctcaagttcgtggtgtaccactcgggcatgccgtgggttttagatgtggcacggcgacaaggcatagatggagctccatttttcacaacttcatgtgcagttgcaactatctttcaccatgttcatgaaggaacactacagctacccttagaaggtcctagggcaataatgccgtctatgccaccattagagctcaacgatctaccgacgtttctctccgatgtcgagtcataccctgctttccttaagcttgccatgaatcaatactccaatttgaagcaagtaaactgcatcttctatagcagttttgataagttggaaaaagaggtactaaaatggatggagagccaagactggccggtcaagatgataggaccaacaattccatcagttttcttggacaagcggttggaggatgacaaagactacggtcttagccttttcaagccaaatgtggagacttgcatgcaatggctggactccaggaaacctggctcagtcgtctatgcatcatttggaagcttggccaacctaagcatagagcaaactgcggaactcgcatggggtcttaagaatagcagtttcaacttcctgtgggtagtccgagaaacagaaaaggataaactccctaagaattttgtagaggagatatcagggaagggtctggtagtgagttggtgcccacagctacaagtcttggctcacaaggcagtgggatgtttcctcactcactgtggatggaattcgactctcgaagcgttgagcttgggagtaccgatggtggtattgccacactgggctgatcaaccgacgaatgcaaagtttgtggcggatgtgtggaaagtcggagttagggtgaatgtgaataagaaatctggtcttgcaacaaaagaagaaatagctgtgcgtattaaggaggtcatgaacaaggaaaaggggatgaagtttaaaaaggcttcgttgatttggaaggaattggctaaagaggctgtggatgaagggggaagctctgataagaacatcgaagaatttgtggcaaaagttctattgatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

472

Amino Acids

52.91

Weight (kDa)

7.12

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 722
AccB1I GGYRCC 1 cut(s) 1041
AccIII TCCGGA 1 cut(s) 333
AciI CCGC 4 cut(s) 115, 769, 914, 1193
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 2 cut(s) 719, 888
AcsI RAATTY 3 cut(s) 997, 1105, 1391
AfaI GTAC 4 cut(s) 177, 380, 693, 1137
AfiI CCNNNNNNNGG 4 cut(s) 80, 201, 217, 515
AflII CTTAAG 2 cut(s) 608, 932
AgsI TTSAA 5 cut(s) 80, 104, 640, 808, 949
AjnI CCWGG 2 cut(s) 845, 853
AjuI GAANNNNNNNTTGG 1 cut(s) 28
Alw21I GWGCWC 2 cut(s) 439, 558
Alw26I GTCTC 2 cut(s) 127, 815
AlwI GGATC 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 385
Aor13HI TCCGGA 1 cut(s) 333
AoxI GGCC 3 cut(s) 130, 719, 888
ApeKI GCWGC 2 cut(s) 38, 342
ApoI RAATTY 3 cut(s) 997, 1105, 1391
AspA2I CCTAGG 1 cut(s) 521
AspS9I GGNCC 3 cut(s) 204, 518, 737
AsuHPI GGTGA 4 cut(s) 142, 292, 470, 1231
AsuNHI GCTAGC 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 385
AvaII GGWCC 3 cut(s) 204, 518, 737
AvrII CCTAGG 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 1046
BalI TGGCCA 1 cut(s) 890
BanI GGYRCC 1 cut(s) 1041
BanII GRGCYC 2 cut(s) 439, 558
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BauI CACGAG 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 439, 558
BbvI GCAGC 2 cut(s) 25, 354
BccI CCATC 7 cut(s) 91, 227, 425, 697, 757, 1095, 1135
BceAI ACGGC 3 cut(s) 379, 431, 520
BciT130I CCWGG 2 cut(s) 847, 855
BclI TGATCA 1 cut(s) 1165
BcoDI GTCTC 2 cut(s) 127, 815
BfaI CTAG 3 cut(s) 119, 165, 522
BfmI CTRYAG 3 cut(s) 144, 500, 661
BfrI CTTAAG 2 cut(s) 608, 932
BisI GCNGC 3 cut(s) 39, 116, 343
BlnI CCTAGG 1 cut(s) 521
BlsI GCNGC 3 cut(s) 40, 117, 344
Bme1390I CCNGG 2 cut(s) 847, 855
Bme18I GGWCC 3 cut(s) 204, 518, 737
BmeT110I CYCGRG 1 cut(s) 385
BmgT120I GGNCC 3 cut(s) 204, 518, 737
BmiI GGNNCC 3 cut(s) 205, 238, 1043
BmrFI CCNGG 2 cut(s) 847, 855
BmrI ACTGGG 1 cut(s) 1168
BmsI GCATC 3 cut(s) 337, 663, 881
BmtI GCTAGC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 1168
BoxI GACNNNNGTC 1 cut(s) 792
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 1 cut(s) 829
Bpu10I CCTNAGC 1 cut(s) 896
BpuEI CTTGAG 1 cut(s) 350
BsaBI GATNNNNATC 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 395, 521
BsaWI WCCGGW 2 cut(s) 73, 333
BsaXI ACNNNNNCTCC 2 cut(s) 1203, 1233
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 201, 217, 515
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 2 cut(s) 722, 1163
Bse3DI GCAATG 1 cut(s) 839
Bse8I GATNNNNATC 1 cut(s) 329
BseAI TCCGGA 1 cut(s) 333
BseBI CCWGG 2 cut(s) 847, 855
BseDI CCNNGG 2 cut(s) 395, 521
BseGI GGATG 7 cut(s) 708, 784, 1085, 1106, 1201, 1308, 1363
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 4 cut(s) 80, 201, 217, 515
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 2 cut(s) 243, 873
BseNI ACTGG 2 cut(s) 722, 1163
BseRI GAGGAG 2 cut(s) 284, 1022
BseSI GKGCMC 1 cut(s) 1046
BseXI GCAGC 2 cut(s) 25, 354
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 3 cut(s) 132, 721, 890
BshNI GGYRCC 1 cut(s) 1041
BsiHKAI GWGCWC 2 cut(s) 439, 558
BsiHKCI CYCGRG 1 cut(s) 385
BsiSI CCGG 3 cut(s) 74, 334, 722
BslI CCNNNNNNNGG 4 cut(s) 80, 201, 217, 515
BsmAI GTCTC 2 cut(s) 127, 815
BsmI GAATGC 1 cut(s) 1183
BsnI GGCC 3 cut(s) 132, 721, 890
BsoBI CYCGRG 1 cut(s) 385
Bsp1286I GDGCHC 3 cut(s) 439, 558, 1046
Bsp13I TCCGGA 1 cut(s) 333
Bsp143I GATC 4 cut(s) 330, 562, 1165, 1413
BspACI CCGC 4 cut(s) 115, 769, 914, 1193
BspANI GGCC 3 cut(s) 132, 721, 890
BspCNI CTCAG 2 cut(s) 242, 872
BspEI TCCGGA 1 cut(s) 333
BspHI TCATGA 3 cut(s) 321, 487, 1284
BspLI GGNNCC 3 cut(s) 205, 238, 1043
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 1041
BspTI CTTAAG 2 cut(s) 608, 932
BsrDI GCAATG 1 cut(s) 839
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 2 cut(s) 722, 1163
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 2 cut(s) 395, 521
BssMI GATC 4 cut(s) 330, 562, 1165, 1413
BssSI CACGAG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 42
Bst2UI CCWGG 2 cut(s) 847, 855
Bst4CI ACNGT 2 cut(s) 794, 1097
BstAFI CTTAAG 2 cut(s) 608, 932
BstC8I GCNNGC 4 cut(s) 166, 392, 615, 830
BstDEI CTNAG 6 cut(s) 229, 511, 797, 859, 896, 993
BstDSI CCRYGG 1 cut(s) 395
BstF5I GGATG 7 cut(s) 708, 784, 1085, 1106, 1201, 1308, 1363
BstKTI GATC 4 cut(s) 333, 565, 1168, 1416
BstMAI GTCTC 2 cut(s) 127, 815
BstMBI GATC 4 cut(s) 330, 562, 1165, 1413
BstMWI GCNNNNNNNGC 5 cut(s) 38, 541, 920, 1070, 1349
BstNI CCWGG 2 cut(s) 847, 855
BstNSI RCATGY 2 cut(s) 394, 832
BstPAI GACNNNNGTC 1 cut(s) 792
BstSCI CCNGG 2 cut(s) 845, 853
BstSFI CTRYAG 3 cut(s) 144, 500, 661
BstSLI GKGCMC 1 cut(s) 1046
BstV1I GCAGC 2 cut(s) 25, 354
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
BsuRI GGCC 3 cut(s) 132, 721, 890
BtgI CCRYGG 1 cut(s) 395
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 7 cut(s) 708, 784, 1085, 1106, 1201, 1308, 1363
BtsI GCAGTG 1 cut(s) 1080
BtsIMutI CAGTG 3 cut(s) 1080, 1093, 1156
Cac8I GCNNGC 4 cut(s) 166, 392, 615, 830
CciI TCATGA 3 cut(s) 321, 487, 1284
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 3 cut(s) 204, 518, 737
CseI GACGC 1 cut(s) 339
Csp6I GTAC 4 cut(s) 176, 379, 692, 1136
CspCI CAANNNNNGTGG 2 cut(s) 1170, 1205
CviQI GTAC 4 cut(s) 176, 379, 692, 1136
DdeI CTNAG 6 cut(s) 229, 511, 797, 859, 896, 993
DpnI GATC 4 cut(s) 332, 564, 1167, 1415
DpnII GATC 4 cut(s) 330, 562, 1165, 1413
DraI TTTAAA 1 cut(s) 1312
DrdI GACNNNNNNGTC 1 cut(s) 722
DseDI GACNNNNNNGTC 1 cut(s) 722
EaeI YGGCCR 2 cut(s) 719, 888
EciI GGCGGA 1 cut(s) 1208
Ecl136II GAGCTC 2 cut(s) 437, 556
Eco130I CCWWGG 1 cut(s) 521
Eco24I GRGCYC 2 cut(s) 439, 558
Eco32I GATATC 1 cut(s) 1014
Eco47I GGWCC 3 cut(s) 204, 518, 737
Eco53kI GAGCTC 2 cut(s) 437, 556
Eco88I CYCGRG 1 cut(s) 385
EcoICRI GAGCTC 2 cut(s) 437, 556
EcoO109I RGGNCCY 1 cut(s) 518
EcoRI GAATTC 1 cut(s) 1105
EcoRII CCWGG 2 cut(s) 845, 853
EcoRV GATATC 1 cut(s) 1014
EcoT14I CCWWGG 1 cut(s) 521
EcoT22I ATGCAT 1 cut(s) 874
EcoT38I GRGCYC 2 cut(s) 439, 558
ErhI CCWWGG 1 cut(s) 521
FbaI TGATCA 1 cut(s) 1165
Fnu4HI GCNGC 3 cut(s) 39, 116, 343
FokI GGATG 7 cut(s) 715, 791, 1092, 1113, 1208, 1315, 1370
FriOI GRGCYC 2 cut(s) 439, 558
Fsp4HI GCNGC 3 cut(s) 39, 116, 343
FspBI CTAG 3 cut(s) 119, 165, 522
GluI GCNGC 3 cut(s) 39, 116, 343
GsuI CTGGAG 1 cut(s) 829
HaeIII GGCC 3 cut(s) 132, 721, 890
HapII CCGG 3 cut(s) 74, 334, 722
HgaI GACGC 1 cut(s) 339
HindIII AAGCTT 2 cut(s) 611, 883
HinfI GANTC 7 cut(s) 254, 272, 291, 590, 622, 842, 1111
HpaII CCGG 3 cut(s) 74, 334, 722
HphI GGTGA 4 cut(s) 142, 292, 470, 1231
Hpy166II GTNNAC 2 cut(s) 379, 649
Hpy188I TCNGA 9 cut(s) 232, 241, 259, 290, 583, 968, 1211, 1375, 1418
Hpy188III TCNNGA 7 cut(s) 44, 322, 334, 488, 727, 1115, 1285
Hpy8I GTNNAC 2 cut(s) 379, 649
Hpy99I CGWCG 3 cut(s) 355, 574, 1177
HpyAV CCTTC 5 cut(s) 485, 509, 1015, 1327, 1355
HpyCH4III ACNGT 2 cut(s) 794, 1097
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 8 cut(s) 461, 467, 654, 828, 832, 872, 1181, 1247
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 541, 920, 1070, 1349
HpyF3I CTNAG 6 cut(s) 229, 511, 797, 859, 896, 993
HpySE526I ACGT 1 cut(s) 572
Kpn2I TCCGGA 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 1165
Kzo9I GATC 4 cut(s) 330, 562, 1165, 1413
LmnI GCTCC 3 cut(s) 242, 434, 442
Lsp1109I GCAGC 2 cut(s) 25, 354
LweI GCATC 3 cut(s) 337, 663, 881
MaeI CTAG 3 cut(s) 119, 165, 522
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 3 cut(s) 83, 139, 148
MalI GATC 4 cut(s) 332, 564, 1167, 1415
MboI GATC 4 cut(s) 330, 562, 1165, 1413
MboII GAAGA 5 cut(s) 29, 340, 649, 1268, 1400
MflI RGATCY 1 cut(s) 330
MhlI GDGCHC 3 cut(s) 439, 558, 1046
MlsI TGGCCA 1 cut(s) 890
MluCI AATT 7 cut(s) 104, 634, 744, 997, 1105, 1337, 1391
MluNI TGGCCA 1 cut(s) 890
MlyI GAGTC 4 cut(s) 281, 599, 836, 1105
MmeI TCCRAC 4 cut(s) 231, 660, 753, 1189
Mox20I TGGCCA 1 cut(s) 890
Mph1103I ATGCAT 1 cut(s) 874
MroI TCCGGA 1 cut(s) 333
MscI TGGCCA 1 cut(s) 890
MseI TTAA 6 cut(s) 249, 311, 609, 933, 1275, 1311
MslI CAYNNNNRTG 2 cut(s) 59, 486
Msp20I TGGCCA 1 cut(s) 890
MspCI CTTAAG 2 cut(s) 608, 932
MspI CCGG 3 cut(s) 74, 334, 722
MspR9I CCNGG 2 cut(s) 847, 855
Mva1269I GAATGC 1 cut(s) 1183
MvaI CCWGG 2 cut(s) 847, 855
MwoI GCNNNNNNNGC 5 cut(s) 38, 541, 920, 1070, 1349
NdeII GATC 4 cut(s) 330, 562, 1165, 1413
NheI GCTAGC 1 cut(s) 164
NlaIV GGNNCC 3 cut(s) 205, 238, 1043
NmuCI GTSAC 3 cut(s) 83, 139, 148
NsiI ATGCAT 1 cut(s) 874
NspI RCATGY 2 cut(s) 394, 832
PaeI GCATGC 2 cut(s) 394, 832
PagI TCATGA 3 cut(s) 321, 487, 1284
PcsI WCGNNNNNNNCGW 1 cut(s) 392
PctI GAATGC 1 cut(s) 1183
PfeI GAWTC 3 cut(s) 254, 291, 622
PfoI TCCNGGA 1 cut(s) 845
PkrI GCNGC 3 cut(s) 40, 117, 344
PleI GAGTC 4 cut(s) 280, 598, 836, 1105
PpsI GAGTC 4 cut(s) 280, 598, 836, 1105
PpuMI RGGWCCY 1 cut(s) 518
PshAI GACNNNNGTC 1 cut(s) 792
Psp124BI GAGCTC 2 cut(s) 439, 558
Psp5II RGGWCCY 1 cut(s) 518
Psp6I CCWGG 2 cut(s) 845, 853
PspGI CCWGG 2 cut(s) 845, 853
PspN4I GGNNCC 3 cut(s) 205, 238, 1043
PspPI GGNCC 3 cut(s) 204, 518, 737
PspPPI RGGWCCY 1 cut(s) 518
PsuI RGATCY 1 cut(s) 330
RsaI GTAC 4 cut(s) 177, 380, 693, 1137
RsaNI GTAC 4 cut(s) 176, 379, 692, 1136
RseI CAYNNNNRTG 2 cut(s) 59, 486
SacI GAGCTC 2 cut(s) 439, 558
SaqAI TTAA 6 cut(s) 249, 311, 609, 933, 1275, 1311
SatI GCNGC 3 cut(s) 39, 116, 343
Sau3AI GATC 4 cut(s) 330, 562, 1165, 1413
Sau96I GGNCC 3 cut(s) 204, 518, 737
SchI GAGTC 4 cut(s) 281, 599, 836, 1105
ScrFI CCNGG 2 cut(s) 847, 855
SduI GDGCHC 3 cut(s) 439, 558, 1046
SfaNI GCATC 3 cut(s) 337, 663, 881
SfcI CTRYAG 3 cut(s) 144, 500, 661
SinI GGWCC 3 cut(s) 204, 518, 737
SmiMI CAYNNNNRTG 2 cut(s) 59, 486
SmlI CTYRAG 3 cut(s) 365, 608, 932
SmoI CTYRAG 3 cut(s) 365, 608, 932
SphI GCATGC 2 cut(s) 394, 832
Sse9I AATT 7 cut(s) 104, 634, 744, 997, 1105, 1337, 1391
SsiI CCGC 4 cut(s) 115, 769, 914, 1193
SspMI CTAG 3 cut(s) 119, 165, 522
SstI GAGCTC 2 cut(s) 439, 558
StyD4I CCNGG 2 cut(s) 845, 853
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 2 cut(s) 794, 1097
TaiI ACGT 1 cut(s) 575
TaqI TCGA 4 cut(s) 588, 1109, 1116, 1386
TasI AATT 7 cut(s) 104, 634, 744, 997, 1105, 1337, 1391
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 3 cut(s) 254, 291, 622
Tru1I TTAA 6 cut(s) 249, 311, 609, 933, 1275, 1311
Tru9I TTAA 6 cut(s) 249, 311, 609, 933, 1275, 1311
TscAI CASTG 3 cut(s) 1080, 1100, 1163
TseFI GTSAC 3 cut(s) 83, 139, 148
TseI GCWGC 2 cut(s) 38, 342
Tsp45I GTSAC 3 cut(s) 83, 139, 148
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 3 cut(s) 1080, 1100, 1163
Vha464I CTTAAG 2 cut(s) 608, 932
VpaK11BI GGWCC 3 cut(s) 204, 518, 737
XapI RAATTY 3 cut(s) 997, 1105, 1391
XceI RCATGY 2 cut(s) 394, 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XmaJI CCTAGG 1 cut(s) 521
XspI CTAG 3 cut(s) 119, 165, 522
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.