Rh2BG005600

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001004
Physical Location & Seq
Reverse (-)
423952 .. 424712
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG005600.1

Sequence Viewer

Length: 726 bp
ATGACAAGTCAGTCTTGGGCAGTGAAGACAGTAGGACCAACAATTCCGTCAATGTTTCTGGACAAGCGATTTGAAGATGACAAAGACTATAGTTTCAACCTCTTCGAGCCTGTGGAGACTTACTTGAAGTGGCTTGACTCCAAGGAAACTGGCTCAGTGGTTTATGCATCATTTGGAAGCTACGGTAGCCTAGAAAAGAAGCAAGTGGAGGAAATAGCTTGGGGTCTGAAGAACAGCAACTACCACTTCTTGTGGGTAGTCAGAGAATTAGAGAAGGAGAAGCTTCCGAAGAATTTCATAAAGGAGGTATCAGATTCAGCTGATCAGAAGGGTCTTGTCGTGAGTTGGTGCTCGCAGCTGCGAGTCTTGGCTCACAAGGCCTTAGGATGCTTTGTTACTCACTGCGGATGGAATTCGACCCTTGAAGCTTTGAGCTTAGGGGCCCCGATGGTGGCAATGCCGCAATGGACTGATCAAACAACAAACGCCAAGTTTGTTGAGGATGTGTGGAAAGCAGGAGTTAGAGTGAGAGTGGATGAGAAATTAGGTGTTGCAACAAAAGAAGAGATAGCTAACTGTATTAGGCAAGTCATGGAAGAGGAAAAAGGGGTGGAGATCAGAAAGGCTCTATCAAATTGGAAGCAATTGGCTAAAGAGGCAGTCAACCAAGGGGGAAGCTCCGATCAAAATATTGAGGAGTTTGTGGCACAACTTCTGTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

241

Amino Acids

27.29

Weight (kDa)

5.42

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 47 - 202 1.1e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AciI CCGC 2 cut(s) 405, 461
AcsI RAATTY 2 cut(s) 292, 412
AcuI CTGAAG 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 4 cut(s) 74, 97, 127, 425
AluBI AGCT 9 cut(s) 180, 218, 283, 320, 358, 428, 435, 572, 678
AluI AGCT 9 cut(s) 180, 218, 283, 320, 358, 428, 435, 572, 678
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 2 cut(s) 378, 441
ApaI GGGCCC 1 cut(s) 445
ApeKI GCWGC 2 cut(s) 355, 358
ApoI RAATTY 2 cut(s) 292, 412
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
Asp700I GAANNNNTTC 1 cut(s) 293
AspS9I GGNCC 3 cut(s) 35, 441, 442
AvaII GGWCC 1 cut(s) 35
AxyI CCTNAGG 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 345, 367
BccI CCATC 2 cut(s) 402, 442
BclI TGATCA 2 cut(s) 322, 472
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 88
BisI GCNGC 3 cut(s) 356, 359, 461
BlsI GCNGC 3 cut(s) 357, 360, 462
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 35, 441, 442
BmiI GGNNCC 3 cut(s) 442, 443, 444
BmsI GCATC 2 cut(s) 176, 377
BpiI GAAGAC 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 141, 667
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 154
Bse21I CCTNAGG 1 cut(s) 382
Bse3DI GCAATG 2 cut(s) 462, 470
BseDI CCNNGG 2 cut(s) 141, 667
BseGI GGATG 4 cut(s) 392, 413, 508, 541
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMI GCAATG 2 cut(s) 462, 470
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 710
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 2 cut(s) 345, 367
BshFI GGCC 2 cut(s) 380, 443
BsiHKAI GWGCWC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 2 cut(s) 380, 443
Bsp120I GGGCCC 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 353, 445
Bsp143I GATC 4 cut(s) 322, 472, 615, 682
BspACI CCGC 2 cut(s) 405, 461
BspANI GGCC 2 cut(s) 380, 443
BspCNI CTCAG 1 cut(s) 167
BspLI GGNNCC 3 cut(s) 442, 443, 444
BsrDI GCAATG 2 cut(s) 462, 470
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 141, 667
BssMI GATC 4 cut(s) 322, 472, 615, 682
BssT1I CCWWGG 2 cut(s) 141, 667
Bst4CI ACNGT 3 cut(s) 31, 185, 578
Bst6I CTCTTC 3 cut(s) 107, 558, 591
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 3 cut(s) 154, 382, 436
BstF5I GGATG 4 cut(s) 392, 413, 508, 541
BstKTI GATC 4 cut(s) 325, 475, 618, 685
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 4 cut(s) 322, 472, 615, 682
BstMWI GCNNNNNNNGC 3 cut(s) 186, 377, 656
BstSFI CTRYAG 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 445
BstV1I GCAGC 2 cut(s) 345, 367
BstV2I GAAGAC 1 cut(s) 32
Bsu36I CCTNAGG 1 cut(s) 382
BsuRI GGCC 2 cut(s) 380, 443
BtsCI GGATG 4 cut(s) 392, 413, 508, 541
BtsI GCAGTG 2 cut(s) 27, 400
BtsIMutI CAGTG 3 cut(s) 27, 162, 400
Cac8I GCNNGC 1 cut(s) 353
Cfr13I GGNCC 3 cut(s) 35, 441, 442
CviAII CATG 1 cut(s) 592
DdeI CTNAG 3 cut(s) 154, 382, 436
DpnI GATC 4 cut(s) 324, 474, 617, 684
DpnII GATC 4 cut(s) 322, 472, 615, 682
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 3 cut(s) 107, 558, 591
EarI CTCTTC 3 cut(s) 107, 558, 591
Eco130I CCWWGG 2 cut(s) 141, 667
Eco147I AGGCCT 1 cut(s) 380
Eco24I GRGCYC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 248
Eco81I CCTNAGG 1 cut(s) 382
EcoO109I RGGNCCY 2 cut(s) 441, 442
EcoRI GAATTC 1 cut(s) 412
EcoT14I CCWWGG 2 cut(s) 141, 667
EcoT22I ATGCAT 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 445
ErhI CCWWGG 2 cut(s) 141, 667
FaeI CATG 1 cut(s) 595
FaiI YATR 4 cut(s) 90, 165, 299, 593
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 1 cut(s) 591
FbaI TGATCA 2 cut(s) 322, 472
Fnu4HI GCNGC 3 cut(s) 356, 359, 461
FokI GGATG 4 cut(s) 399, 420, 515, 548
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 3 cut(s) 356, 359, 461
FspBI CTAG 1 cut(s) 191
GluI GCNGC 3 cut(s) 356, 359, 461
HaeIII GGCC 2 cut(s) 380, 443
Hin1II CATG 1 cut(s) 595
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 2 cut(s) 281, 426
HinfI GANTC 3 cut(s) 137, 314, 363
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 7 cut(s) 228, 263, 288, 313, 327, 620, 682
Hpy188III TCNNGA 2 cut(s) 59, 340
Hpy8I GTNNAC 1 cut(s) 664
HpyAV CCTTC 2 cut(s) 268, 322
HpyCH4III ACNGT 3 cut(s) 31, 185, 578
HpyCH4V TGCA 2 cut(s) 167, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 377, 656
HpyF3I CTNAG 3 cut(s) 154, 382, 436
Hsp92II CATG 1 cut(s) 595
Ksp22I TGATCA 2 cut(s) 322, 472
Kzo9I GATC 4 cut(s) 322, 472, 615, 682
LmnI GCTCC 1 cut(s) 683
LpnPI CCDG 4 cut(s) 44, 123, 135, 501
Lsp1109I GCAGC 2 cut(s) 345, 367
LweI GCATC 2 cut(s) 176, 377
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 394
MalI GATC 4 cut(s) 324, 474, 617, 684
MboI GATC 4 cut(s) 322, 472, 615, 682
MboII GAAGA 7 cut(s) 37, 86, 94, 241, 301, 575, 608
MfeI CAATTG 1 cut(s) 644
MhlI GDGCHC 2 cut(s) 353, 445
MluCI AATT 8 cut(s) 42, 266, 292, 412, 542, 634, 644, 720
MlyI GAGTC 2 cut(s) 131, 372
MnlI CCTC 7 cut(s) 110, 202, 298, 493, 592, 649, 688
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 1 cut(s) 719
MspA1I CMGCKG 2 cut(s) 320, 358
MunI CAATTG 1 cut(s) 644
MwoI GCNNNNNNNGC 3 cut(s) 186, 377, 656
NdeII GATC 4 cut(s) 322, 472, 615, 682
NlaIII CATG 1 cut(s) 595
NlaIV GGNNCC 3 cut(s) 442, 443, 444
NsiI ATGCAT 1 cut(s) 169
PceI AGGCCT 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 3 cut(s) 357, 360, 462
PleI GAGTC 2 cut(s) 131, 371
PpsI GAGTC 2 cut(s) 131, 371
PspN4I GGNNCC 3 cut(s) 442, 443, 444
PspOMI GGGCCC 1 cut(s) 441
PspPI GGNCC 3 cut(s) 35, 441, 442
PsrI GAACNNNNNNTAC 2 cut(s) 224, 256
PvuII CAGCTG 2 cut(s) 320, 358
SaqAI TTAA 1 cut(s) 719
SatI GCNGC 3 cut(s) 356, 359, 461
Sau3AI GATC 4 cut(s) 322, 472, 615, 682
Sau96I GGNCC 3 cut(s) 35, 441, 442
SchI GAGTC 2 cut(s) 131, 372
SduI GDGCHC 2 cut(s) 353, 445
SfaNI GCATC 2 cut(s) 176, 377
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 1 cut(s) 35
Sse9I AATT 8 cut(s) 42, 266, 292, 412, 542, 634, 644, 720
SseBI AGGCCT 1 cut(s) 380
SsiI CCGC 2 cut(s) 405, 461
SspI AATATT 1 cut(s) 691
SspMI CTAG 1 cut(s) 191
StuI AGGCCT 1 cut(s) 380
StyI CCWWGG 2 cut(s) 141, 667
TaaI ACNGT 3 cut(s) 31, 185, 578
TaqI TCGA 2 cut(s) 105, 416
TasI AATT 8 cut(s) 42, 266, 292, 412, 542, 634, 644, 720
TauI GCSGC 1 cut(s) 463
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 719
Tru9I TTAA 1 cut(s) 719
TscAI CASTG 3 cut(s) 27, 162, 407
TseI GCWGC 2 cut(s) 355, 358
TspDTI ATGAA 1 cut(s) 286
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 3 cut(s) 27, 162, 407
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 2 cut(s) 292, 412
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.