Rmu_ssc0000436.1_g000005

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000436.1
OG0001004
Physical Location & Seq
Forward (+)
18953 .. 19582
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000436.1_g000005.1.cds

Sequence Viewer

Length: 564 bp
atgagaaagagtagtcttagcctgttcaagcctgatgtggagacttgcatgaagtggctagactccaaggaagctggctcggtggtctatgtatcatttggaagcttggccaacctaacaaaggagaaaatggaggaactagcatggggtctaaataatagtaactaccacttcttgtgggtaatcaaagagtcagaaaaggaaaagcttcctatcaatttttttgaggagatatcagagaagggccttgttgtgagttggtgctcccaactgcaagtcctggctcacaaggccgtgggatgctttgttactcactgtggttggaattcgatactcgaagcgttgaacttgggagtaccaatggtggcagtgccgcaatgggcagatcagacaacgaatgctaagtttgtggtggatgtgtggaaagtaggagtcatggacaaagagatgggaatggagattataaaggcttcgcaaatttggaaggagttggctagagaggctgtggatcaaggaggaagttcggataacaacattgaggactttgtggcacaacttcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

187

Amino Acids

21.08

Weight (kDa)

5.16

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
AciI CCGC 1 cut(s) 374
AclWI GGATC 1 cut(s) 516
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 2 cut(s) 325, 477
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 28, 346
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 3 cut(s) 74, 105, 208
AluI AGCT 3 cut(s) 74, 105, 208
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 516
AoxI GGCC 3 cut(s) 108, 244, 291
ApoI RAATTY 2 cut(s) 325, 477
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 266
BccI CCATC 1 cut(s) 442
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 3 cut(s) 59, 140, 495
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 66, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 66, 294
BseGI GGATG 2 cut(s) 305, 421
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 242
BshFI GGCC 3 cut(s) 110, 246, 293
BsiHKAI GWGCWC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 3 cut(s) 110, 246, 293
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 2 cut(s) 385, 508
BspACI CCGC 1 cut(s) 374
BspANI GGCC 3 cut(s) 110, 246, 293
BspPI GGATC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 66, 294
BssMI GATC 2 cut(s) 385, 508
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 17, 402
BstDSI CCRYGG 1 cut(s) 294
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 305, 421
BstKTI GATC 2 cut(s) 388, 511
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 385, 508
BstMWI GCNNNNNNNGC 2 cut(s) 290, 500
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 279
BsuRI GGCC 3 cut(s) 110, 246, 293
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 2 cut(s) 305, 421
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 313, 375
Cac8I GCNNGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 356
CviAII CATG 3 cut(s) 49, 144, 436
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 2 cut(s) 17, 402
DpnI GATC 2 cut(s) 387, 510
DpnII GATC 2 cut(s) 385, 508
EaeI YGGCCR 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 66
Eco32I GATATC 1 cut(s) 234
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 279
EcoRV GATATC 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 3 cut(s) 52, 147, 439
FaiI YATR 5 cut(s) 50, 90, 145, 437, 464
FatI CATG 3 cut(s) 48, 143, 435
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 2 cut(s) 312, 428
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 3 cut(s) 59, 140, 495
GluI GCNGC 1 cut(s) 374
HaeIII GGCC 3 cut(s) 110, 246, 293
Hin1II CATG 3 cut(s) 52, 147, 439
HindIII AAGCTT 2 cut(s) 103, 206
HinfI GANTC 3 cut(s) 62, 191, 432
Hpy188I TCNGA 4 cut(s) 196, 238, 390, 526
HpyAV CCTTC 2 cut(s) 235, 478
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 2 cut(s) 48, 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 500
HpyF3I CTNAG 2 cut(s) 17, 402
Hsp92II CATG 3 cut(s) 52, 147, 439
Kzo9I GATC 2 cut(s) 385, 508
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 5 cut(s) 35, 45, 60, 266, 293
LweI GCATC 1 cut(s) 290
MaeI CTAG 3 cut(s) 59, 140, 495
MaeIII GTNAC 2 cut(s) 161, 307
MalI GATC 2 cut(s) 387, 510
MboI GATC 2 cut(s) 385, 508
MhlI GDGCHC 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 3 cut(s) 217, 325, 477
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 3 cut(s) 56, 200, 441
MmeI TCCRAC 1 cut(s) 302
MnlI CCTC 5 cut(s) 127, 220, 493, 509, 532
Mox20I TGGCCA 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 207
MscI TGGCCA 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 290, 500
NdeII GATC 2 cut(s) 385, 508
NlaIII CATG 3 cut(s) 52, 147, 439
PctI GAATGC 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 3 cut(s) 56, 199, 440
PpsI GAGTC 3 cut(s) 56, 199, 440
PsiI TTATAA 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspPI GGNCC 1 cut(s) 244
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 2 cut(s) 385, 508
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 3 cut(s) 56, 200, 441
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 266
SetI ASST 4 cut(s) 76, 107, 117, 210
SfaNI GCATC 1 cut(s) 290
Sse9I AATT 3 cut(s) 217, 325, 477
SsiI CCGC 1 cut(s) 374
SspMI CTAG 3 cut(s) 59, 140, 495
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 317
TaqI TCGA 3 cut(s) 329, 336, 559
TasI AATT 3 cut(s) 217, 325, 477
TauI GCSGC 1 cut(s) 376
TscAI CASTG 2 cut(s) 320, 375
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 2 cut(s) 320, 375
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 2 cut(s) 325, 477
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 3 cut(s) 59, 140, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.