Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Reverse (-)

11093335 .. 11099794

Gene Structure 6460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18801.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGATTATGGCAGAACCGCCACAATCACCCTCAAAATACAGCCAAGTCCCTATTCCTAAATCCCTGCCACCGATTACCAAGCCCCCAAAAGCAGCAATCTCAGCTCCAAAGCCTTCCTGGTTCTCCCCCGAAAGGTTGCTGTTAATCCTGTGTCTAGTTAACTTGATCAATTATATTGATCGAGGAGCAATAGCAAGCAATGGGGTCAATGGGAGCATTGGGATTTGTGATGAGAGCGGAATTTGCCATGCCGGTACCGGAATTCAGGGAGATTTTAAATTGAACAACTTTCAAGATGGTGTTCTATCATCTGCATTTATGGTTGGGCTTCTTCTGGCCTCACCCATATTTGCATCATTGGCAAAGAGCCACAATCCTTTTAGGCTGATTGGAGTTGGGTTATCTATTTGGACATTTGCCACAGCTGGGTGTGGTAGTTCATTTAATTTCTGGTCTATTGCAATATGTCGCATGCTGGTTGGAGTTGGTGAGGCATCTTTCATAAGTCTTGCAGCTCCATTCATTGATGACCATGCCCCTGCAGATCAGAAAACAGCATGGCTGGCAACGTTTTACATGTGTATACCAACTGGAGTTGCTATAGGCTATGTCTATGGCGGATGTGTTGGAGACATCATCAGTTGGCGTTGTGCATTCTGGGGAGAGGCCCTTTTAATGCTTCCATTTGCTGTCTTGAATTTTTTGGTGAAACCATTGCAGATGAAAGGTTTACCTCCTACTGGCTCCACAATGCTTTTGGAATCTATTGAAACTAGTCCTTTGATAGAAGGTTTAAAGATCCCAAACATAAATGGTCGCGTGACAGTTGCCTCCGGTGAGGCCTCGTGGACATGCCCTATAATCAAATTTTTGAACGAACTTTCAAGCTTCTCAAAGGATTTGAAAGTACTTTTGGTGGATAAAGTTTACATTGTTAATGTATTAGGTTATGTGTCATACAACTTTGTCATCGGAACCTACTCATACTGGGGGCCAAAGGCTGGTTATAACATATACCATATGAGTAAACCAGATTTGATGTTCGGAGGTATTACTCTTCTCTGTGGACTTGTAGGAACTTTAAGTGGAGGTCTCATCCTTGATGCAGTTGGTGCCACAATTCAAAATGCTTTTAAGCTTCTCGCTGGAGCGACAATGCTGGGTGCAATATTTTGCTTCAGTGCGTTTTGTGCAAAGAACTTGTACAATTTTGTAGTTCTTTTCTCACTGGGGGAGCTACTTCTGTTTTCAACACAGGCTCCTGTAAATTATGTGTCTCTGCACTGTGTTAAGCCAGGGCTAAGGCCACTGTCTATGGCTATCTCAACTCTTTCAATCCACGTCTTTGGTGATGTTCCTTCCTCACCACTTGTCGGAGTTGTTCAGGATTATGTAGAAAACTGGAGGAAAACGACTCTAATCTTCACCTCTGTTTACTTTGTTGCAACAGGAATATGGTTCATAGGGATCTTCCTTAGAAGTGTTGACAAGTTTGAAGAAGATGATGAAGATGATGGAGTGTCTCCAATAGGGCAAACCAACAAAGAACCATTGCTTGAAGATCACACAATTAAGGGTGGACTAGACTCTGGTGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

534

Amino Acids

57.34

Weight (kDa)

5.69

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	87 - 444	5.2e-29	Major Facilitator Superfamily
OATP	PF03137	151 - 396	1.7e-14	Organic Anion Transporter Polypeptide (OATP) family
OATP	PF03137	396 - 463	2.5e-07	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1008
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	2 cut(s)	254, 1112
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AccBSI	CCGCTC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	583
AccII	CGCG	1 cut(s)	819
AciI	CCGC	3 cut(s)	17, 237, 618
AclI	AACGTT	1 cut(s)	569
AclWI	GGATC	2 cut(s)	793, 1475
AcsI	RAATTY	4 cut(s)	240, 261, 697, 866
AcuI	CTGAAG	1 cut(s)	1162
AfaI	GTAC	3 cut(s)	256, 909, 1205
AfiI	CCNNNNNNNGG	5 cut(s)	132, 426, 740, 1001, 1373
AflIII	ACRYGT	1 cut(s)	576
AhlI	ACTAGT	1 cut(s)	773
AjiI	CACGTC	1 cut(s)	1342
AjnI	CCWGG	2 cut(s)	116, 1294
AjuI	GAANNNNNNNTTGG	4 cut(s)	36, 68, 896, 928
AluBI	AGCT	6 cut(s)	104, 425, 515, 888, 1138, 1237
AluI	AGCT	6 cut(s)	104, 425, 515, 888, 1138, 1237
Alw26I	GTCTC	4 cut(s)	624, 1097, 1281, 1527
AlwI	GGATC	2 cut(s)	793, 1475
AoxI	GGCC	5 cut(s)	336, 666, 840, 992, 1304
ApeKI	GCWGC	2 cut(s)	92, 512
ApoI	RAATTY	4 cut(s)	240, 261, 697, 866
Asp718I	GGTACC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	667, 992
AsuHPI	GGTGA	8 cut(s)	18, 333, 500, 718, 848, 1356, 1361, 1417
BanI	GGYRCC	2 cut(s)	254, 1112
BauI	CACGAG	1 cut(s)	844
BbvI	GCAGC	2 cut(s)	104, 524
BccI	CCATC	2 cut(s)	290, 1508
BciT130I	CCWGG	2 cut(s)	118, 1296
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	4 cut(s)	624, 1097, 1281, 1527
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	3 cut(s)	155, 774, 1583
BfmI	CTRYAG	2 cut(s)	540, 600
BisI	GCNGC	2 cut(s)	93, 513
BlsI	GCNGC	2 cut(s)	94, 514
BmcAI	AGTACT	1 cut(s)	909
Bme1390I	CCNGG	2 cut(s)	118, 1296
BmgBI	CACGTC	1 cut(s)	1342
BmgT120I	GGNCC	2 cut(s)	667, 992
BmiI	GGNNCC	6 cut(s)	256, 745, 976, 993, 1114, 1260
BmrFI	CCNGG	2 cut(s)	118, 1296
BmrI	ACTGGG	2 cut(s)	997, 1238
BmsI	GCATC	3 cut(s)	362, 503, 1093
BmuI	ACTGGG	2 cut(s)	997, 1238
BpmI	CTGGAG	3 cut(s)	612, 1167, 1423
Bpu10I	CCTNAGC	1 cut(s)	1301
BsaI	GGTCTC	1 cut(s)	1097
BsaJI	CCNNGG	1 cut(s)	1295
BsaWI	WCCGGW	2 cut(s)	257, 833
BsaXI	ACNNNNNCTCC	2 cut(s)	1243, 1273
Bsc4I	CCNNNNNNNGG	5 cut(s)	132, 426, 740, 1001, 1373
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	5 cut(s)	595, 745, 992, 1233, 1406
Bse3DI	GCAATG	3 cut(s)	205, 713, 1550
BseBI	CCWGG	2 cut(s)	118, 1296
BseDI	CCNNGG	1 cut(s)	1295
BseGI	GGATG	2 cut(s)	626, 1095
BseLI	CCNNNNNNNGG	5 cut(s)	132, 426, 740, 1001, 1373
BseMI	GCAATG	3 cut(s)	205, 713, 1550
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	5 cut(s)	595, 745, 992, 1233, 1406
BseRI	GAGGAG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	104, 524
BseYI	CCCAGC	2 cut(s)	425, 1159
BsgI	GTGCAG	1 cut(s)	1265
Bsh1236I	CGCG	1 cut(s)	819
BshFI	GGCC	5 cut(s)	338, 668, 842, 994, 1306
BshNI	GGYRCC	2 cut(s)	254, 1112
BsiSI	CCGG	3 cut(s)	252, 258, 834
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	5 cut(s)	132, 426, 740, 1001, 1373
BsmAI	GTCTC	4 cut(s)	624, 1097, 1281, 1527
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	5 cut(s)	338, 668, 842, 994, 1306
Bso31I	GGTCTC	1 cut(s)	1097
Bsp1407I	TGTACA	1 cut(s)	1203
Bsp143I	GATC	6 cut(s)	165, 178, 544, 798, 1467, 1561
BspACI	CCGC	3 cut(s)	17, 237, 618
BspANI	GGCC	5 cut(s)	338, 668, 842, 994, 1306
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	819
BspLI	GGNNCC	6 cut(s)	256, 745, 976, 993, 1114, 1260
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	2 cut(s)	793, 1475
BspT107I	GGYRCC	2 cut(s)	254, 1112
BspTNI	GGTCTC	1 cut(s)	1097
BsrBI	CCGCTC	1 cut(s)	237
BsrDI	GCAATG	3 cut(s)	205, 713, 1550
BsrFI	RCCGGY	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	1203
BsrI	ACTGG	5 cut(s)	595, 745, 992, 1233, 1406
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	1295
BssMI	GATC	6 cut(s)	165, 178, 544, 798, 1467, 1561
BssNAI	GTATAC	1 cut(s)	584
BssSI	CACGAG	1 cut(s)	844
Bst1107I	GTATAC	1 cut(s)	584
Bst2BI	CACGAG	1 cut(s)	844
Bst2UI	CCWGG	2 cut(s)	118, 1296
Bst4CI	ACNGT	3 cut(s)	826, 1286, 1311
Bst6I	CTCTTC	1 cut(s)	1062
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstAUI	TGTACA	1 cut(s)	1203
BstC8I	GCNNGC	3 cut(s)	196, 473, 564
BstDEI	CTNAG	3 cut(s)	100, 1301, 1475
BstF5I	GGATG	2 cut(s)	626, 1095
BstFNI	CGCG	1 cut(s)	819
BstKTI	GATC	6 cut(s)	168, 181, 547, 801, 1470, 1564
BstMAI	GTCTC	4 cut(s)	624, 1097, 1281, 1527
BstMBI	GATC	6 cut(s)	165, 178, 544, 798, 1467, 1561
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 243, 359, 563, 1112, 1190
BstNI	CCWGG	2 cut(s)	118, 1296
BstNSI	RCATGY	3 cut(s)	475, 580, 855
BstSCI	CCNGG	2 cut(s)	116, 1294
BstSFI	CTRYAG	2 cut(s)	540, 600
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	104, 524
BstX2I	RGATCY	2 cut(s)	798, 1467
BstXI	CCANNNNNNTGG	1 cut(s)	1346
BstYI	RGATCY	2 cut(s)	798, 1467
BstZ17I	GTATAC	1 cut(s)	584
BsuRI	GGCC	5 cut(s)	338, 668, 842, 994, 1306
BtrI	CACGTC	1 cut(s)	1342
BtsCI	GGATG	2 cut(s)	626, 1095
BtsIMutI	CAGTG	4 cut(s)	1186, 1226, 1282, 1307
Cac8I	GCNNGC	3 cut(s)	196, 473, 564
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	667, 992
Csp6I	GTAC	3 cut(s)	255, 908, 1204
CviAII	CATG	6 cut(s)	248, 472, 533, 558, 577, 852
CviQI	GTAC	3 cut(s)	255, 908, 1204
DdeI	CTNAG	3 cut(s)	100, 1301, 1475
DpnI	GATC	6 cut(s)	167, 180, 546, 800, 1469, 1563
DpnII	GATC	6 cut(s)	165, 178, 544, 798, 1467, 1561
DraI	TTTAAA	2 cut(s)	277, 795
Eam1104I	CTCTTC	1 cut(s)	1062
EarI	CTCTTC	1 cut(s)	1062
EciI	GGCGGA	1 cut(s)	633
Eco147I	AGGCCT	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	1097
Eco57I	CTGAAG	1 cut(s)	1162
EcoO109I	RGGNCCY	1 cut(s)	667
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	116, 1294
FaeI	CATG	6 cut(s)	251, 475, 536, 561, 580, 855
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	6 cut(s)	247, 471, 532, 557, 576, 851
FauNDI	CATATG	1 cut(s)	1020
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	2 cut(s)	93, 513
FokI	GGATG	2 cut(s)	633, 1082
Fsp4HI	GCNGC	2 cut(s)	93, 513
FspBI	CTAG	3 cut(s)	155, 774, 1583
GluI	GCNGC	2 cut(s)	93, 513
GsaI	CCCAGC	2 cut(s)	429, 1163
GsuI	CTGGAG	3 cut(s)	612, 1167, 1423
HaeIII	GGCC	5 cut(s)	338, 668, 842, 994, 1306
HapII	CCGG	3 cut(s)	252, 258, 834
Hin1II	CATG	6 cut(s)	251, 475, 536, 561, 580, 855
HincII	GTYRAC	2 cut(s)	160, 1486
HindII	GTYRAC	2 cut(s)	160, 1486
HindIII	AAGCTT	2 cut(s)	886, 1136
HinfI	GANTC	3 cut(s)	761, 1414, 1586
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	3 cut(s)	252, 258, 834
HphI	GGTGA	8 cut(s)	18, 333, 500, 718, 848, 1356, 1361, 1417
Hpy188I	TCNGA	4 cut(s)	549, 974, 1046, 1376
Hpy188III	TCNNGA	3 cut(s)	293, 694, 1385
HpyAV	CCTTC	3 cut(s)	123, 782, 1368
HpyCH4III	ACNGT	3 cut(s)	826, 1286, 1311
HpyCH4IV	ACGT	2 cut(s)	569, 1341
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 243, 359, 563, 1112, 1190
HpyF3I	CTNAG	3 cut(s)	100, 1301, 1475
HpySE526I	ACGT	2 cut(s)	569, 1341
Hsp92II	CATG	6 cut(s)	251, 475, 536, 561, 580, 855
KpnI	GGTACC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	165
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	165, 178, 544, 798, 1467, 1561
LmnI	GCTCC	8 cut(s)	109, 185, 213, 520, 749, 1148, 1234, 1264
Lsp1109I	GCAGC	2 cut(s)	104, 524
LweI	GCATC	3 cut(s)	362, 503, 1093
MaeI	CTAG	3 cut(s)	155, 774, 1583
MaeII	ACGT	2 cut(s)	569, 1341
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	6 cut(s)	167, 180, 546, 800, 1469, 1563
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	6 cut(s)	165, 178, 544, 798, 1467, 1561
MboII	GAAGA	8 cut(s)	323, 1049, 1414, 1462, 1508, 1511, 1520, 1571
MflI	RGATCY	2 cut(s)	798, 1467
MlyI	GAGTC	2 cut(s)	1408, 1580
MmeI	TCCRAC	3 cut(s)	460, 607, 1354
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	252, 258, 834
MspR9I	CCNGG	2 cut(s)	118, 1296
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	2 cut(s)	118, 1296
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	6 cut(s)	101, 243, 359, 563, 1112, 1190
NdeI	CATATG	1 cut(s)	1020
NdeII	GATC	6 cut(s)	165, 178, 544, 798, 1467, 1561
NlaIII	CATG	6 cut(s)	251, 475, 536, 561, 580, 855
NlaIV	GGNNCC	6 cut(s)	256, 745, 976, 993, 1114, 1260
NmuCI	GTSAC	1 cut(s)	820
NspI	RCATGY	3 cut(s)	475, 580, 855
PaeI	GCATGC	1 cut(s)	475
PceI	AGGCCT	1 cut(s)	842
PciI	ACATGT	1 cut(s)	576
PctI	GAATGC	1 cut(s)	653
PfeI	GAWTC	1 cut(s)	761
PflMI	CCANNNNNTGG	1 cut(s)	1001
PkrI	GCNGC	2 cut(s)	94, 514
PleI	GAGTC	2 cut(s)	1408, 1580
PpsI	GAGTC	2 cut(s)	1408, 1580
PscI	ACATGT	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	1008
Psp1406I	AACGTT	1 cut(s)	569
Psp6I	CCWGG	2 cut(s)	116, 1294
PspFI	CCCAGC	2 cut(s)	425, 1159
PspGI	CCWGG	2 cut(s)	116, 1294
PspN4I	GGNNCC	6 cut(s)	256, 745, 976, 993, 1114, 1260
PspPI	GGNCC	2 cut(s)	667, 992
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	2 cut(s)	798, 1467
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	3 cut(s)	256, 909, 1205
RsaNI	GTAC	3 cut(s)	255, 908, 1204
SatI	GCNGC	2 cut(s)	93, 513
Sau3AI	GATC	6 cut(s)	165, 178, 544, 798, 1467, 1561
Sau96I	GGNCC	2 cut(s)	667, 992
ScaI	AGTACT	1 cut(s)	909
SchI	GAGTC	2 cut(s)	1408, 1580
ScrFI	CCNGG	2 cut(s)	118, 1296
SfaNI	GCATC	3 cut(s)	362, 503, 1093
SfcI	CTRYAG	2 cut(s)	540, 600
SpeI	ACTAGT	1 cut(s)	773
SphI	GCATGC	1 cut(s)	475
SseBI	AGGCCT	1 cut(s)	842
SsiI	CCGC	3 cut(s)	17, 237, 618
SspI	AATATT	1 cut(s)	1170
SspMI	CTAG	3 cut(s)	155, 774, 1583
StuI	AGGCCT	1 cut(s)	842
StyD4I	CCNGG	2 cut(s)	116, 1294
TaaI	ACNGT	3 cut(s)	826, 1286, 1311
TaiI	ACGT	2 cut(s)	572, 1344
TaqI	TCGA	1 cut(s)	181
TatI	WGTACW	2 cut(s)	907, 1203
TfiI	GAWTC	1 cut(s)	761
TscAI	CASTG	4 cut(s)	1186, 1233, 1289, 1314
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	2 cut(s)	92, 512
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	6 cut(s)	429, 490, 511, 737, 1450, 1521
TspRI	CASTG	4 cut(s)	1186, 1233, 1289, 1314
Van91I	CCANNNNNTGG	1 cut(s)	1001
XapI	RAATTY	4 cut(s)	240, 261, 697, 866
XceI	RCATGY	3 cut(s)	475, 580, 855
XcmI	CCANNNNNNNNNTGG	2 cut(s)	114, 754
XmiI	GTMKAC	1 cut(s)	583
XspI	CTAG	3 cut(s)	155, 774, 1583
ZrmI	AGTACT	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.