Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Forward (+)

36094007 .. 36095724

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002545

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAGAGCCTAGCACCAATACGACCTCGTTTCGCGAGGTGCCTCCCAACCTTTCGAGCATTCTCTTCTTCTTCTTCTTCTTTTTCAGATTACTCCAACCGGTCCCGCGGTGGCCTCCCTCGCTTCTTCTCCGAACGCCTCCCTTCTTCCAAGGGAGGCCTAGTTCGTGTTCAAGACGATGAGTTCTGGGACATGACTAAAGTCTTAAGATTGCGCGCCAACGATAGGGTAGAGCTGTTTAATGGGAAAGGAGGTTTGGTAGAAGGAGTAATACAAACGATGGACCGGTCCGGGCTTGATTTCATGGCATTGGAAGATCCAAAGTTGGTTCTTCCACAGAGCACGCAGTGGCATGTGTTTGTAGCTTTAGGGCGCCTCTGCCCTTCCATTGATCTATTTTTGCCAGATTTGACCTCTATTATTGACAGTGATTATGGCGGCGGTGCTGAGGCCCTGATAGTTTGGGCTGGAGAAAGCCATGGCGACCGTGAAAGGGTGGAGCGCTTCATTCACGATGATGACCCAATTTTCTCATATGGGGTGCCTCCTACAATGGCTGGGATTGGTGCTTTGATGCGTATATGGCTGCAATCAAGCTTCCCCGAGGCTACTGAGGGTGCGTGGTGCAACCGTCGGTATAACTTGGCGGCTGAGACCGGAATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

223

Amino Acids

24.76

Weight (kDa)

5.45

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_4	PF20260	59 - 99	3.3e-08	RNA methyltransferase PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	39, 372, 541
AccII	CGCG	3 cut(s)	35, 108, 216
AciI	CCGC	5 cut(s)	106, 108, 438, 441, 647
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	373
AdeI	CACNNNGTG	1 cut(s)	348
AfeI	AGCGCT	1 cut(s)	503
AfiI	CCNNNNNNNGG	2 cut(s)	225, 493
AflII	CTTAAG	1 cut(s)	205
AgeI	ACCGGT	2 cut(s)	99, 285
AgsI	TTSAA	1 cut(s)	173
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	3 cut(s)	235, 365, 597
AluI	AGCT	3 cut(s)	235, 365, 597
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	602
Aor51HI	AGCGCT	1 cut(s)	503
AoxI	GGCC	3 cut(s)	112, 157, 450
ApeKI	GCWGC	1 cut(s)	586
ApoI	RAATTY	1 cut(s)	660
AsiGI	ACCGGT	2 cut(s)	99, 285
AspLEI	GCGC	4 cut(s)	216, 218, 375, 504
AspS9I	GGNCC	4 cut(s)	102, 283, 288, 451
AsuC2I	CCSGG	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	3 cut(s)	102, 283, 288
BanI	GGYRCC	3 cut(s)	39, 372, 541
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
Bbv12I	GWGCWC	1 cut(s)	344
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	573
BccI	CCATC	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	2 cut(s)	11, 161
BfoI	RGCGCY	2 cut(s)	376, 505
BfrI	CTTAAG	1 cut(s)	205
BisI	GCNGC	3 cut(s)	439, 587, 648
BlsI	GCNGC	3 cut(s)	440, 588, 649
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	3 cut(s)	102, 283, 288
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	4 cut(s)	102, 283, 288, 451
BmiI	GGNNCC	4 cut(s)	41, 104, 374, 543
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	1 cut(s)	564
BoxI	GACNNNNGTC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	373
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	4 cut(s)	106, 150, 478, 603
BsaWI	WCCGGW	3 cut(s)	99, 285, 656
BsaXI	ACNNNNNCTCC	4 cut(s)	147, 177, 243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 493
Bse118I	RCCGGY	2 cut(s)	99, 285
BseDI	CCNNGG	4 cut(s)	106, 150, 478, 603
BseLI	CCNNNNNNNGG	2 cut(s)	225, 493
BseMII	CTCAG	3 cut(s)	438, 603, 642
BsePI	GCGCGC	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	573
BseYI	CCCAGC	1 cut(s)	557
Bsh1236I	CGCG	3 cut(s)	35, 108, 216
Bsh1285I	CGRYCG	1 cut(s)	487
BshFI	GGCC	3 cut(s)	114, 159, 452
BshNI	GGYRCC	3 cut(s)	39, 372, 541
BshTI	ACCGGT	2 cut(s)	99, 285
BsiEI	CGRYCG	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	4 cut(s)	100, 286, 291, 657
BslFI	GGGAC	2 cut(s)	88, 203
BslI	CCNNNNNNNGG	2 cut(s)	225, 493
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	2 cut(s)	88, 203
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	114, 159, 452
Bso31I	GGTCTC	1 cut(s)	647
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	316, 391
Bsp19I	CCATGG	1 cut(s)	478
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	5 cut(s)	106, 108, 438, 441, 647
BspANI	GGCC	3 cut(s)	114, 159, 452
BspCNI	CTCAG	3 cut(s)	439, 604, 643
BspFNI	CGCG	3 cut(s)	35, 108, 216
BspLI	GGNNCC	4 cut(s)	41, 104, 374, 543
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	3 cut(s)	39, 372, 541
BspTI	CTTAAG	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	647
BsrFI	RCCGGY	2 cut(s)	99, 285
BssAI	RCCGGY	2 cut(s)	99, 285
BssECI	CCNNGG	4 cut(s)	106, 150, 478, 603
BssHII	GCGCGC	1 cut(s)	214
BssMI	GATC	2 cut(s)	316, 391
BssNI	GRCGYC	1 cut(s)	373
BssT1I	CCWWGG	2 cut(s)	150, 478
Bst4CI	ACNGT	3 cut(s)	428, 488, 632
Bst6I	CTCTTC	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	373
BstAFI	CTTAAG	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	216, 344
BstDEI	CTNAG	3 cut(s)	447, 612, 651
BstDSI	CCRYGG	2 cut(s)	106, 478
BstFNI	CGCG	3 cut(s)	35, 108, 216
BstH2I	RGCGCY	2 cut(s)	376, 505
BstHHI	GCGC	4 cut(s)	216, 218, 375, 504
BstKTI	GATC	2 cut(s)	319, 394
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	2 cut(s)	316, 391
BstMCI	CGRYCG	1 cut(s)	487
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 583
BstNSI	RCATGY	1 cut(s)	356
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	290
BstUI	CGCG	3 cut(s)	35, 108, 216
BstV1I	GCAGC	1 cut(s)	573
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	114, 159, 452
BtgI	CCRYGG	2 cut(s)	106, 478
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	2 cut(s)	353, 433
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	216, 344
CfoI	GCGC	4 cut(s)	216, 218, 375, 504
Cfr10I	RCCGGY	2 cut(s)	99, 285
Cfr13I	GGNCC	4 cut(s)	102, 283, 288, 451
Cfr42I	CCGCGG	1 cut(s)	109
CpoI	CGGWCCG	1 cut(s)	288
CspAI	ACCGGT	2 cut(s)	99, 285
CspI	CGGWCCG	1 cut(s)	288
CviAII	CATG	4 cut(s)	193, 304, 353, 479
DdeI	CTNAG	3 cut(s)	447, 612, 651
DinI	GGCGCC	1 cut(s)	374
DpnI	GATC	2 cut(s)	318, 393
DpnII	GATC	2 cut(s)	316, 391
DraIII	CACNNNGTG	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	150, 478
Eco147I	AGGCCT	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	647
Eco47I	GGWCC	3 cut(s)	102, 283, 288
Eco47III	AGCGCT	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	150, 478
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
ErhI	CCWWGG	2 cut(s)	150, 478
FaeI	CATG	4 cut(s)	196, 307, 356, 482
FaqI	GGGAC	2 cut(s)	88, 203
FatI	CATG	4 cut(s)	192, 303, 352, 478
FauI	CCCGC	1 cut(s)	113
FauNDI	CATATG	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	439, 587, 648
Fsp4HI	GCNGC	3 cut(s)	439, 587, 648
FspBI	CTAG	2 cut(s)	11, 161
GlaI	GCGC	4 cut(s)	215, 217, 374, 503
GluI	GCNGC	3 cut(s)	439, 587, 648
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	489
HaeII	RGCGCY	2 cut(s)	376, 505
HaeIII	GGCC	3 cut(s)	114, 159, 452
HapII	CCGG	4 cut(s)	100, 286, 291, 657
HhaI	GCGC	4 cut(s)	216, 218, 375, 504
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	4 cut(s)	196, 307, 356, 482
Hin6I	GCGC	4 cut(s)	214, 216, 373, 502
HinP1I	GCGC	4 cut(s)	214, 216, 373, 502
HindIII	AAGCTT	1 cut(s)	595
HpaII	CCGG	4 cut(s)	100, 286, 291, 657
Hpy188I	TCNGA	2 cut(s)	88, 133
Hpy188III	TCNNGA	3 cut(s)	34, 173, 512
Hpy99I	CGWCG	1 cut(s)	636
HpyAV	CCTTC	3 cut(s)	153, 257, 393
HpyCH4III	ACNGT	3 cut(s)	428, 488, 632
HpyCH4V	TGCA	3 cut(s)	4, 589, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 583
HpyF3I	CTNAG	3 cut(s)	447, 612, 651
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	4 cut(s)	196, 307, 356, 482
HspAI	GCGC	4 cut(s)	214, 216, 373, 502
KasI	GGCGCC	1 cut(s)	372
KspI	CCGCGG	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	316, 391
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	8 cut(s)	113, 172, 299, 304, 417, 453, 467, 543
Lsp1109I	GCAGC	1 cut(s)	573
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	2 cut(s)	11, 161
MalI	GATC	2 cut(s)	318, 393
MboI	GATC	2 cut(s)	316, 391
MboII	GAAGA	9 cut(s)	57, 60, 63, 66, 69, 118, 138, 323, 326
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	2 cut(s)	525, 660
Mly113I	GGCGCC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	120
MseI	TTAA	2 cut(s)	206, 240
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	108
MspCI	CTTAAG	1 cut(s)	205
MspI	CCGG	4 cut(s)	100, 286, 291, 657
MspR9I	CCNGG	1 cut(s)	292
Mva1269I	GAATGC	1 cut(s)	59
MvnI	CGCG	3 cut(s)	35, 108, 216
MwoI	GCNNNNNNNGC	2 cut(s)	120, 583
NarI	GGCGCC	1 cut(s)	373
NciI	CCSGG	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	478
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	2 cut(s)	316, 391
NlaIII	CATG	4 cut(s)	196, 307, 356, 482
NlaIV	GGNNCC	4 cut(s)	41, 104, 374, 543
NruI	TCGCGA	1 cut(s)	35
NspI	RCATGY	1 cut(s)	356
PauI	GCGCGC	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	159
PctI	GAATGC	1 cut(s)	59
PinAI	ACCGGT	2 cut(s)	99, 285
PkrI	GCNGC	3 cut(s)	440, 588, 649
PluTI	GGCGCC	1 cut(s)	376
PshAI	GACNNNNGTC	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	557
PspN4I	GGNNCC	4 cut(s)	41, 104, 374, 543
PspPI	GGNCC	4 cut(s)	102, 283, 288, 451
PsuI	RGATCY	1 cut(s)	316
PteI	GCGCGC	1 cut(s)	214
RruI	TCGCGA	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	516
Rsr2I	CGGWCCG	1 cut(s)	288
RsrII	CGGWCCG	1 cut(s)	288
SacII	CCGCGG	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	206, 240
SatI	GCNGC	3 cut(s)	439, 587, 648
Sau3AI	GATC	2 cut(s)	316, 391
Sau96I	GGNCC	4 cut(s)	102, 283, 288, 451
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	8 cut(s)	28, 41, 53, 237, 256, 367, 416, 599
SfaNI	GCATC	1 cut(s)	564
SfoI	GGCGCC	1 cut(s)	374
Sfr303I	CCGCGG	1 cut(s)	109
SgrBI	CCGCGG	1 cut(s)	109
SinI	GGWCC	3 cut(s)	102, 283, 288
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	2 cut(s)	525, 660
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	5 cut(s)	106, 108, 438, 441, 647
SspDI	GGCGCC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	11, 161
StuI	AGGCCT	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	2 cut(s)	150, 478
TaaI	ACNGT	3 cut(s)	428, 488, 632
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	525, 660
TauI	GCSGC	2 cut(s)	441, 650
Tru1I	TTAA	2 cut(s)	206, 240
Tru9I	TTAA	2 cut(s)	206, 240
TscAI	CASTG	2 cut(s)	353, 433
TseI	GCWGC	1 cut(s)	586
TspDTI	ATGAA	2 cut(s)	292, 496
TspRI	CASTG	2 cut(s)	353, 433
Vha464I	CTTAAG	1 cut(s)	205
VpaK11BI	GGWCC	3 cut(s)	102, 283, 288
XapI	RAATTY	1 cut(s)	660
XceI	RCATGY	1 cut(s)	356
XspI	CTAG	2 cut(s)	11, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.