RLG00000028802

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001699
Physical Location & Seq
Forward (+)
28232493 .. 28235389
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028802

Sequence Viewer

Length: 393 bp
ATGTGCGTGGGATGTCGATTTATGGCGATGTGTGATTATAGTGGGACAAGATCGGTGACTGTAGGTCGTGGCAGATTGGATTCGTGGTGGGGCGAAATCGGGTGCCTCTACCCTTCCAGACATCTATTTTTGTCAGATCTGACCCCTCTAATCGAAGGTGATCATGGCGGCAGTGCTGGGACCCTGATAGTTTGGGCTGGCGAAAGTCATAGAGGCGGTGAAACGGTAGAGTGCCTCATCCATGTTGGTGACCCGATTCCCTCATCTGCATTGCCTCCTAAAATGGCTTGGATCAATGCTTTGATGTCTATGTGGCTGGTATCGAACTTTTCCAAGGCTGATGAAGGTGTGCAACTATGGTACGATGGCACAACCGTCAATGTAATTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.15

Weight (kDa)

5.15

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AciI CCGC 2 cut(s) 168, 216
AclWI GGATC 1 cut(s) 299
AfaI GTAC 1 cut(s) 362
AhdI GACNNNNNGTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 4 cut(s) 67, 170, 230, 260
AvaII GGWCC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 102
BccI CCATC 1 cut(s) 359
BclI TGATCA 1 cut(s) 160
BfmI CTRYAG 1 cut(s) 60
BglII AGATCT 1 cut(s) 136
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 180
BmeRI GACNNNNNGTC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 3 cut(s) 104, 181, 182
BsaJI CCNNGG 1 cut(s) 333
Bse3DI GCAATG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 2 cut(s) 17, 237
BseMI GCAATG 1 cut(s) 269
BseYI CCCAGC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 102
BslFI GGGAC 2 cut(s) 58, 193
BsmFI GGGAC 2 cut(s) 58, 193
Bsp143I GATC 4 cut(s) 50, 136, 160, 291
BspACI CCGC 2 cut(s) 168, 216
BspLI GGNNCC 3 cut(s) 104, 181, 182
BspPI GGATC 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 4 cut(s) 50, 136, 160, 291
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 3 cut(s) 61, 226, 376
BstC8I GCNNGC 1 cut(s) 199
BstEII GGTNACC 1 cut(s) 248
BstF5I GGATG 2 cut(s) 17, 237
BstKTI GATC 4 cut(s) 53, 139, 163, 294
BstMBI GATC 4 cut(s) 50, 136, 160, 291
BstPI GGTNACC 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 41
BtsCI GGATG 2 cut(s) 17, 237
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 361
CviAII CATG 2 cut(s) 164, 242
CviJI RGCY 4 cut(s) 197, 287, 316, 338
CviKI_1 RGCY 4 cut(s) 197, 287, 316, 338
CviQI GTAC 1 cut(s) 361
DpnI GATC 4 cut(s) 52, 138, 162, 293
DpnII GATC 4 cut(s) 50, 136, 160, 291
DriI GACNNNNNGTC 1 cut(s) 63
Eam1105I GACNNNNNGTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 180
EcoO65I GGTNACC 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 2 cut(s) 167, 245
FaiI YATR 7 cut(s) 23, 39, 165, 210, 243, 311, 358
FaqI GGGAC 2 cut(s) 58, 193
FatI CATG 2 cut(s) 163, 241
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 2 cut(s) 24, 224
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
GsaI CCCAGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 167, 245
HinfI GANTC 2 cut(s) 80, 256
HphI GGTGA 4 cut(s) 67, 170, 230, 260
Hpy188I TCNGA 2 cut(s) 136, 141
Hpy188III TCNNGA 1 cut(s) 117
HpyAV CCTTC 3 cut(s) 123, 149, 338
HpyCH4III ACNGT 3 cut(s) 61, 226, 376
HpyCH4V TGCA 2 cut(s) 269, 352
Hsp92II CATG 2 cut(s) 167, 245
KflI GGGWCCC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 4 cut(s) 50, 136, 160, 291
LpnPI CCDG 5 cut(s) 130, 162, 183, 197, 302
MaeIII GTNAC 2 cut(s) 55, 248
MalI GATC 4 cut(s) 52, 138, 162, 293
MboI GATC 4 cut(s) 50, 136, 160, 291
MflI RGATCY 1 cut(s) 136
MluCI AATT 1 cut(s) 384
MnlI CCTC 6 cut(s) 116, 156, 206, 245, 271, 285
MslI CAYNNNNRTG 1 cut(s) 246
NdeII GATC 4 cut(s) 50, 136, 160, 291
NlaIII CATG 2 cut(s) 167, 245
NlaIV GGNNCC 3 cut(s) 104, 181, 182
NmuCI GTSAC 2 cut(s) 55, 248
PfeI GAWTC 2 cut(s) 80, 256
PkrI GCNGC 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 180
PspEI GGTNACC 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 104, 181, 182
PspPI GGNCC 1 cut(s) 180
PspPPI RGGWCCY 1 cut(s) 180
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 246
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 4 cut(s) 50, 136, 160, 291
Sau96I GGNCC 1 cut(s) 180
SetI ASST 3 cut(s) 67, 160, 349
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 246
Sse9I AATT 1 cut(s) 384
SsiI CCGC 2 cut(s) 168, 216
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 3 cut(s) 61, 226, 376
TaqI TCGA 3 cut(s) 16, 153, 323
TasI AATT 1 cut(s) 384
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 80, 256
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 55, 248
Tsp45I GTSAC 2 cut(s) 55, 248
TspDTI ATGAA 1 cut(s) 357
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.