Prupe.6G211400_v2.0.a1

sphingolipid transporter spinster homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
21970490 .. 21978339
7850 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G211400.6

Sequence Viewer

Length: 1617 bp
ATGGCGCAATCAGAACAACAACAACAACACCACCACCACCACCAACCACCTGCAAAGCCAACCCAATCGTCCAACCCTTTCAACCCACAGATGACGACGAGCCCAATCTCAGTCTCAGCTCCAAACCCATCATGGTTCTCCCCCAAAAGGTTGCTCGTAATGCTCTGTACAATTAACATGATAAATTATGTCGATCGAGGAGCAATAGCGAGCAATGGTGTCAATGGTAGTATTGGGATTTGTGATGATAGCGGAATTTGCAGCGCGGGTAGCGGAATTCAGGGAGATTTTAAATTGAGCAATTTTCAAGATGGTGTTCTTTCATCTGCATTTATGGTTGGTCTTCTTATGGCGTCACCCATCTTTGCGTCCTTGGCAAAGAGCCACAATCCTTTTAGGCTGATTGGAGTTGGATTATCTGTTTGGACATTTGCCACAGCTGGGTGTGGTAGTTCAATTGATTTTTGGACCATTGCAATATGTCGTATGCTGGTTGGAGTTGGTGAGGCATCTTTCATAAGTCTTGCCGCGCCGTTCATTGATGATCATGCTCCTGCACCTCAGAAAACGGCATGGCTTGCAATGTTTTACATGTGTATACCAACTGGAATTGCTGTGGGCTATGTTTATGGCGGATTTGTGGGAGACAATTTCAGTTGGCGATATGCATTCTGGGGAGAGGCATTTTGTATGCTTCCATTTGCTGTCTTGGCTTTTGCGATGAATCCATTGCAGTTGAAAGGTTTTGCTCCTGCTGAATCAAGAAAGTTTTTGGAACCTAATGAAACAACTAGTCCTTTAATTGAAGGTTCAGATGACTCAAACATAAATAGTTGCGTGATAGTTTCCTCTGATAAAGCTTCTAGGTCAAGCCCTGCATCCAAATCATTGAACCAACTCTCAAGATTCTCACAAGATATGAAAGAACTTTTGCGTGATAAAGTTTATGTTGTTAATATTTTAGGTTATGTGTCATACAACTTTGTCATTGGAGCCTACTCATACTGGGGGCCAAAGGCTGGTTATAGCATTTATCGTATGAGTAATCCAGATTTGTTGTTTGGTGGTATTACAATTGTTTGTGGAATTCTGGGGACGTTAGCTGGAGGGCTCATCCTTGATTCGGTGAATGCCACAATTAATAATGCTTTTAAGCTTCTCTCTGGAGCAACAATTCTAGGTGCAATCTTTTGCTTCAGTGCCTTCTGTGTAAGGAGCTTGTATTTTTTTGTAGTTCTTTTCTCAATGGGGGAGCTACTTGTGTTTGCCACACAGGCTCCAGTTAATTATGTGTCTCTGCGATGCGTGAAACCAAGTCTTAGGCCATTGTCTATGGCTGTCTCAACTGTTTCAATCCACATCTTTGGTGATGTTCCTTCCTCACCTCTTGCTGGAATCCTCCAGGACCATGTTAACAATTGGAGGGTAACAACTCTTGTTGTGACGTCTGTTCTGTTTTTTGCATCAGGAATATGGTTCATAGGGATCTTCATTAGCAATTCAGACAAATTTAATGAAGATGGTAAGGAAGAAGTCTCCACAGTTGATAGAGCCACAAAAAAGCCTTTGTTTGAAGAGAACACAATTGAGGGAGCCCAAGACTCTGGTGAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

539

Amino Acids

58.11

Weight (kDa)

6.0

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 58
AatII GACGTC 1 cut(s) 1448
Acc36I ACCTGC 1 cut(s) 58
AccB7I CCANNNNNTGG 1 cut(s) 1019
AccI GTMKAC 1 cut(s) 598
AccII CGCG 2 cut(s) 266, 530
AciI CCGC 5 cut(s) 252, 266, 273, 528, 633
AclWI GGATC 1 cut(s) 1493
AcsI RAATTY 4 cut(s) 255, 276, 1086, 1508
AcuI CTGAAG 1 cut(s) 1180
AcyI GRCGYC 2 cut(s) 353, 1445
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 5 cut(s) 147, 441, 1019, 1123, 1391
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 8 cut(s) 82, 308, 456, 739, 806, 892, 1353, 1574
AhlI ACTAGT 1 cut(s) 791
AjnI CCWGG 1 cut(s) 1401
AluBI AGCT 7 cut(s) 119, 440, 860, 1103, 1156, 1218, 1255
AluI AGCT 7 cut(s) 119, 440, 860, 1103, 1156, 1218, 1255
Alw26I GTCTC 5 cut(s) 118, 639, 1299, 1345, 1540
AlwI GGATC 1 cut(s) 1493
AoxI GGCC 2 cut(s) 1010, 1322
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 4 cut(s) 255, 276, 1086, 1508
AseI ATTAAT 1 cut(s) 1140
AspLEI GCGC 3 cut(s) 7, 266, 532
AspS9I GGNCC 3 cut(s) 468, 1010, 1405
AsuHPI GGTGA 5 cut(s) 348, 515, 1138, 1374, 1379
AvaII GGWCC 2 cut(s) 468, 1405
BanII GRGCYC 3 cut(s) 104, 1113, 1597
BbsI GAAGAC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 273
BccI CCATC 4 cut(s) 136, 305, 368, 1514
BceAI ACGGC 2 cut(s) 517, 585
BciT130I CCWGG 1 cut(s) 1403
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 5 cut(s) 118, 639, 1299, 1345, 1540
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 3 cut(s) 792, 864, 1178
BfuAI ACCTGC 1 cut(s) 58
BglI GCCNNNNNGGC 1 cut(s) 1274
BisI GCNGC 2 cut(s) 262, 528
BlsI GCNGC 2 cut(s) 263, 529
Bme1390I CCNGG 1 cut(s) 1403
Bme18I GGWCC 2 cut(s) 468, 1405
BmgT120I GGNCC 3 cut(s) 468, 1010, 1405
BmiI GGNNCC 5 cut(s) 777, 994, 1011, 1278, 1594
BmrFI CCNGG 1 cut(s) 1403
BmrI ACTGGG 1 cut(s) 1015
BmsI GCATC 4 cut(s) 518, 887, 1292, 1472
BmuI ACTGGG 1 cut(s) 1015
BpiI GAAGAC 1 cut(s) 335
BpmI CTGGAG 4 cut(s) 1125, 1185, 1263, 1385
BpuEI CTTGAG 1 cut(s) 886
BsaHI GRCGYC 2 cut(s) 353, 1445
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 1261, 1291
Bsc4I CCNNNNNNNGG 5 cut(s) 147, 441, 1019, 1123, 1391
Bse1I ACTGG 3 cut(s) 610, 1010, 1280
Bse3DI GCAATG 4 cut(s) 220, 471, 588, 728
BseBI CCWGG 1 cut(s) 1403
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 878, 1113
BseLI CCNNNNNNNGG 5 cut(s) 147, 441, 1019, 1123, 1391
BseMI GCAATG 4 cut(s) 220, 471, 588, 728
BseMII CTCAG 3 cut(s) 123, 129, 575
BseNI ACTGG 3 cut(s) 610, 1010, 1280
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 273
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 2 cut(s) 266, 530
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 2 cut(s) 1012, 1324
BsiEI CGRYCG 1 cut(s) 196
BslFI GGGAC 1 cut(s) 1108
BslI CCNNNNNNNGG 5 cut(s) 147, 441, 1019, 1123, 1391
BsmAI GTCTC 5 cut(s) 118, 639, 1299, 1345, 1540
BsmFI GGGAC 1 cut(s) 1108
BsmI GAATGC 2 cut(s) 668, 1135
BsnI GGCC 2 cut(s) 1012, 1324
Bsp1286I GDGCHC 3 cut(s) 104, 1113, 1597
Bsp1407I TGTACA 1 cut(s) 167
Bsp143I GATC 3 cut(s) 193, 544, 1485
BspACI CCGC 5 cut(s) 252, 266, 273, 528, 633
BspANI GGCC 2 cut(s) 1012, 1324
BspCNI CTCAG 3 cut(s) 122, 128, 574
BspFNI CGCG 2 cut(s) 266, 530
BspLI GGNNCC 5 cut(s) 777, 994, 1011, 1278, 1594
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 1 cut(s) 1493
BsrDI GCAATG 4 cut(s) 220, 471, 588, 728
BsrGI TGTACA 1 cut(s) 167
BsrI ACTGG 3 cut(s) 610, 1010, 1280
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 3 cut(s) 193, 544, 1485
BssNAI GTATAC 1 cut(s) 599
BssNI GRCGYC 2 cut(s) 353, 1445
BssT1I CCWWGG 1 cut(s) 372
Bst1107I GTATAC 1 cut(s) 599
Bst2UI CCWGG 1 cut(s) 1403
Bst4CI ACNGT 2 cut(s) 1348, 1543
Bst6I CTCTTC 1 cut(s) 1569
BstACI GRCGYC 2 cut(s) 353, 1445
BstAPI GCANNNNNTGC 1 cut(s) 578
BstAUI TGTACA 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 211, 579
BstDEI CTNAG 4 cut(s) 109, 115, 561, 1319
BstF5I GGATG 2 cut(s) 878, 1113
BstFNI CGCG 2 cut(s) 266, 530
BstHHI GCGC 3 cut(s) 7, 266, 532
BstKTI GATC 3 cut(s) 196, 547, 1488
BstMAI GTCTC 5 cut(s) 118, 639, 1299, 1345, 1540
BstMBI GATC 3 cut(s) 193, 544, 1485
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 7 cut(s) 160, 258, 270, 374, 578, 710, 1274
BstNI CCWGG 1 cut(s) 1403
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 1 cut(s) 1401
BstUI CGCG 2 cut(s) 266, 530
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 1485
BstXI CCANNNNNNTGG 2 cut(s) 1364, 1604
BstYI RGATCY 1 cut(s) 1485
BstZ17I GTATAC 1 cut(s) 599
BsuRI GGCC 2 cut(s) 1012, 1324
BtgZI GCGATG 2 cut(s) 734, 1315
BtsCI GGATG 2 cut(s) 878, 1113
BtsIMutI CAGTG 1 cut(s) 1204
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 211, 579
CfoI GCGC 3 cut(s) 7, 266, 532
Cfr13I GGNCC 3 cut(s) 468, 1010, 1405
CseI GACGC 2 cut(s) 342, 357
Csp6I GTAC 1 cut(s) 168
CviAII CATG 6 cut(s) 132, 178, 548, 573, 592, 1409
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 4 cut(s) 109, 115, 561, 1319
DpnI GATC 3 cut(s) 195, 546, 1487
DpnII GATC 3 cut(s) 193, 544, 1485
DraI TTTAAA 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 1569
EarI CTCTTC 1 cut(s) 1569
EciI GGCGGA 1 cut(s) 648
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 3 cut(s) 104, 1113, 1597
Eco47I GGWCC 2 cut(s) 468, 1405
Eco57I CTGAAG 1 cut(s) 1180
EcoRI GAATTC 2 cut(s) 276, 1086
EcoRII CCWGG 1 cut(s) 1401
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 670
EcoT38I GRGCYC 3 cut(s) 104, 1113, 1597
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 6 cut(s) 135, 181, 551, 576, 595, 1412
FaqI GGGAC 1 cut(s) 1108
FatI CATG 6 cut(s) 131, 177, 547, 572, 591, 1408
FauI CCCGC 1 cut(s) 259
FbaI TGATCA 1 cut(s) 544
FblI GTMKAC 1 cut(s) 598
Fnu4HI GCNGC 2 cut(s) 262, 528
FokI GGATG 2 cut(s) 865, 1100
FriOI GRGCYC 3 cut(s) 104, 1113, 1597
Fsp4HI GCNGC 2 cut(s) 262, 528
FspBI CTAG 3 cut(s) 792, 864, 1178
GlaI GCGC 3 cut(s) 6, 265, 531
GluI GCNGC 2 cut(s) 262, 528
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 4 cut(s) 1125, 1185, 1263, 1385
HaeIII GGCC 2 cut(s) 1012, 1324
HgaI GACGC 2 cut(s) 342, 357
HhaI GCGC 3 cut(s) 7, 266, 532
Hin1I GRCGYC 2 cut(s) 353, 1445
Hin1II CATG 6 cut(s) 135, 181, 551, 576, 595, 1412
Hin6I GCGC 3 cut(s) 5, 264, 530
HinP1I GCGC 3 cut(s) 5, 264, 530
HincII GTYRAC 1 cut(s) 1414
HindII GTYRAC 1 cut(s) 1414
HindIII AAGCTT 2 cut(s) 858, 1154
HinfI GANTC 7 cut(s) 724, 758, 818, 906, 1121, 1395, 1601
HpaI GTTAAC 1 cut(s) 1414
HphI GGTGA 5 cut(s) 348, 515, 1138, 1374, 1379
Hpy166II GTNNAC 2 cut(s) 599, 1414
Hpy188I TCNGA 5 cut(s) 13, 564, 814, 853, 1504
Hpy188III TCNNGA 6 cut(s) 308, 762, 903, 1049, 1164, 1467
Hpy8I GTNNAC 2 cut(s) 599, 1414
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 3 cut(s) 800, 1213, 1386
HpyCH4III ACNGT 2 cut(s) 1348, 1543
HpyCH4IV ACGT 2 cut(s) 1097, 1445
HpyF10VI GCNNNNNNNGC 7 cut(s) 160, 258, 270, 374, 578, 710, 1274
HpyF3I CTNAG 4 cut(s) 109, 115, 561, 1319
HpySE526I ACGT 2 cut(s) 1097, 1445
Hsp92I GRCGYC 2 cut(s) 353, 1445
Hsp92II CATG 6 cut(s) 135, 181, 551, 576, 595, 1412
HspAI GCGC 3 cut(s) 5, 264, 530
Ksp22I TGATCA 1 cut(s) 544
KspAI GTTAAC 1 cut(s) 1414
Kzo9I GATC 3 cut(s) 193, 544, 1485
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 4 cut(s) 518, 887, 1292, 1472
MaeI CTAG 3 cut(s) 792, 864, 1178
MaeII ACGT 2 cut(s) 1097, 1445
MaeIII GTNAC 3 cut(s) 354, 1426, 1441
MalI GATC 3 cut(s) 195, 546, 1487
MboI GATC 3 cut(s) 193, 544, 1485
MboII GAAGA 5 cut(s) 335, 1480, 1529, 1541, 1586
MfeI CAATTG 4 cut(s) 456, 1074, 1417, 1584
MflI RGATCY 1 cut(s) 1485
MhlI GDGCHC 3 cut(s) 104, 1113, 1597
MlyI GAGTC 2 cut(s) 812, 1595
MmeI TCCRAC 3 cut(s) 96, 391, 475
Mph1103I ATGCAT 1 cut(s) 670
MseI TTAA 9 cut(s) 174, 291, 800, 954, 1140, 1152, 1284, 1413, 1512
MspA1I CMGCKG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 1403
MunI CAATTG 4 cut(s) 456, 1074, 1417, 1584
Mva1269I GAATGC 2 cut(s) 668, 1135
MvaI CCWGG 1 cut(s) 1403
MvnI CGCG 2 cut(s) 266, 530
MwoI GCNNNNNNNGC 7 cut(s) 160, 258, 270, 374, 578, 710, 1274
NdeII GATC 3 cut(s) 193, 544, 1485
NlaIII CATG 6 cut(s) 135, 181, 551, 576, 595, 1412
NlaIV GGNNCC 5 cut(s) 777, 994, 1011, 1278, 1594
NmuCI GTSAC 2 cut(s) 354, 1441
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 58
PciI ACATGT 1 cut(s) 591
PctI GAATGC 2 cut(s) 668, 1135
PfeI GAWTC 5 cut(s) 724, 758, 906, 1121, 1395
PflMI CCANNNNNTGG 1 cut(s) 1019
PfoI TCCNGGA 1 cut(s) 1401
PkrI GCNGC 2 cut(s) 263, 529
Ple19I CGATCG 1 cut(s) 196
PleI GAGTC 2 cut(s) 812, 1595
PpsI GAGTC 2 cut(s) 812, 1595
PscI ACATGT 1 cut(s) 591
PshBI ATTAAT 1 cut(s) 1140
Psp6I CCWGG 1 cut(s) 1401
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 1401
PspN4I GGNNCC 5 cut(s) 777, 994, 1011, 1278, 1594
PspPI GGNCC 3 cut(s) 468, 1010, 1405
PsuI RGATCY 1 cut(s) 1485
PvuI CGATCG 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 9 cut(s) 174, 291, 800, 954, 1140, 1152, 1284, 1413, 1512
SatI GCNGC 2 cut(s) 262, 528
Sau3AI GATC 3 cut(s) 193, 544, 1485
Sau96I GGNCC 3 cut(s) 468, 1010, 1405
SchI GAGTC 2 cut(s) 812, 1595
ScrFI CCNGG 1 cut(s) 1403
SduI GDGCHC 3 cut(s) 104, 1113, 1597
SfaNI GCATC 4 cut(s) 518, 887, 1292, 1472
SinI GGWCC 2 cut(s) 468, 1405
SmlI CTYRAG 1 cut(s) 901
SmoI CTYRAG 1 cut(s) 901
SpeI ACTAGT 1 cut(s) 791
SsiI CCGC 5 cut(s) 252, 266, 273, 528, 633
SspI AATATT 1 cut(s) 958
SspMI CTAG 3 cut(s) 792, 864, 1178
StyD4I CCNGG 1 cut(s) 1401
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 1348, 1543
TaiI ACGT 2 cut(s) 1100, 1448
TaqI TCGA 2 cut(s) 192, 196
TatI WGTACW 1 cut(s) 167
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 5 cut(s) 724, 758, 906, 1121, 1395
Tru1I TTAA 9 cut(s) 174, 291, 800, 954, 1140, 1152, 1284, 1413, 1512
Tru9I TTAA 9 cut(s) 174, 291, 800, 954, 1140, 1152, 1284, 1413, 1512
TscAI CASTG 1 cut(s) 1204
TseFI GTSAC 2 cut(s) 354, 1441
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 2 cut(s) 354, 1441
TspDTI ATGAA 9 cut(s) 312, 505, 526, 737, 798, 935, 1468, 1480, 1530
TspRI CASTG 1 cut(s) 1204
Van91I CCANNNNNTGG 1 cut(s) 1019
VpaK11BI GGWCC 2 cut(s) 468, 1405
VspI ATTAAT 1 cut(s) 1140
XapI RAATTY 4 cut(s) 255, 276, 1086, 1508
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 598
XspI CTAG 3 cut(s) 792, 864, 1178
ZraI GACGTC 1 cut(s) 1446
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.