RLG00000004204

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
57182851 .. 57186757
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004204

Sequence Viewer

Length: 978 bp
ATGATAAAAGCCAGCCCGCCGCTAATCGAGGAGTGGTTCAAATTGCTGACGGAGAACGTGAAGAATGTGGAGAAGCTAACCGAAAACGGAGTGGAGGGTTGCTTGAAGCGGACGGGCTTCGAGTACAGCACTCTGCCGGCGCCGGAGTTGGGGACGGCAAGGTCGCAAGTGAGACGCACGCTGCCATTGTTCAAGTGGGCGTTGTCGAGGAGCTTGAGGCTGCTGAGGATTCACAGCGTGTCTCCTCGCGCTGACCCTAACGCCGCCTCCTCTTTCTGGTGTGGCGCAGAGCGGCTCTGGTCGATTTCAAGTATCAGGGCATCTCTGTTTTCGCCGAATCTGACTCCTACTATGGAGAAGGATCGTGGCGGCGGTGTTGAGGCTCTGGTTATTTGGGCTGGCGAAAGCCATGGCGGCAGTGAAAGGATGGAACCTTTCATCCACGATGGTGACCAGATCTCCTCGTCTGGGTCGCCTCCTACAAGGATTGGGATCGGTGCTTTGACGTCTATGTGGCTGCAAGTGTACTTCCCCGAGGGTGCTGAGGGTGCACGGCTTTGGTATGACAGCGAAGCCGTCGCGTTAACTGGGCGGCAGAGATCGAAATTTGTTGATGAAGATGCACTGCTCGTTTACGGCGGAGCTAATAGAACCATTTGGCTACTGTTGGGCGAGATGTACAACGAGGTTGTGATGGTCCTTCACGACCCAGAAGACACCGGCAGTTCAGCGACGGAGGATTCGGGGTGCCCAGCGTTGGGTGTCCTCATCAAACTAGGTCCTCATGGTATTGGGCCTCAGTGGGGCCCATTCTTTGGGCTTGGTTGTTCGACATCCAGAGGCCAATTGGGCCTTCTCCCAGGCTCAAGTCTACAAAAGAAGGGGGCGTGGGTTGATGTTGTGCCTGAGGCTGAGACCGATGGAGGATTCATTATGATCCACCCGGAGCCATTGCCACATATATATATTTGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

35.32

Weight (kDa)

5.46

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
AatII GACGTC 1 cut(s) 509
AccB1I GGYRCC 2 cut(s) 139, 747
AccB7I CCANNNNNTGG 1 cut(s) 815
AccBSI CCGCTC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 871
AccII CGCG 2 cut(s) 249, 581
AclWI GGATC 3 cut(s) 369, 500, 931
AcsI RAATTY 1 cut(s) 605
AcyI GRCGYC 2 cut(s) 140, 506
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 3 cut(s) 125, 527, 680
AfiI CCNNNNNNNGG 7 cut(s) 149, 276, 468, 757, 758, 803, 815
AgsI TTSAA 4 cut(s) 40, 106, 193, 309
AjnI CCWGG 1 cut(s) 859
AjuI GAANNNNNNNTTGG 2 cut(s) 837, 869
AleI CACNNNNGTG 1 cut(s) 447
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
AluBI AGCT 3 cut(s) 76, 213, 644
AluI AGCT 3 cut(s) 76, 213, 644
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 3 cut(s) 166, 246, 908
Alw44I GTGCAC 1 cut(s) 549
AlwI GGATC 3 cut(s) 369, 500, 931
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 4 cut(s) 794, 805, 841, 850
ApaI GGGCCC 1 cut(s) 809
ApaLI GTGCAC 1 cut(s) 549
ApeKI GCWGC 3 cut(s) 181, 220, 517
ApoI RAATTY 1 cut(s) 605
ArsI GACNNNNNNTTYG 2 cut(s) 724, 756
AspLEI GCGC 3 cut(s) 142, 251, 287
AspS9I GGNCC 6 cut(s) 697, 779, 794, 805, 806, 850
AsuC2I CCSGG 1 cut(s) 944
AsuHPI GGTGA 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 2 cut(s) 697, 779
AxyI CCTNAGG 1 cut(s) 906
BaeGI GKGCMC 3 cut(s) 553, 752, 809
BanI GGYRCC 2 cut(s) 139, 747
BanII GRGCYC 1 cut(s) 809
BbsI GAAGAC 1 cut(s) 720
Bbv12I GWGCWC 1 cut(s) 553
BbvCI CCTCAGC 2 cut(s) 224, 543
BbvI GCAGC 3 cut(s) 168, 207, 504
BccI CCATC 4 cut(s) 421, 440, 688, 914
BceAI ACGGC 4 cut(s) 171, 560, 569, 652
BciT130I CCWGG 1 cut(s) 861
BcnI CCSGG 1 cut(s) 944
BcoDI GTCTC 3 cut(s) 166, 246, 908
BfaI CTAG 1 cut(s) 776
BfoI RGCGCY 1 cut(s) 143
BglI GCCNNNNNGGC 2 cut(s) 414, 849
BglII AGATCT 1 cut(s) 456
BisI GCNGC 9 cut(s) 20, 182, 221, 264, 293, 370, 415, 518, 593
BlsI GCNGC 9 cut(s) 21, 183, 222, 265, 294, 371, 416, 519, 594
Bme1390I CCNGG 2 cut(s) 861, 944
Bme18I GGWCC 2 cut(s) 697, 779
BmeT110I CYCGRG 1 cut(s) 533
BmgT120I GGNCC 6 cut(s) 697, 779, 794, 805, 806, 850
BmiI GGNNCC 6 cut(s) 141, 432, 749, 806, 807, 948
BmrFI CCNGG 2 cut(s) 861, 944
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 2 cut(s) 329, 610
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 720
Bpu10I CCTNAGC 2 cut(s) 224, 543
BpuEI CTTGAG 2 cut(s) 235, 850
BpuMI CCSGG 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 491
BsaHI GRCGYC 2 cut(s) 140, 506
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 3 cut(s) 409, 534, 859
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 443, 473
Bsc4I CCNNNNNNNGG 7 cut(s) 149, 276, 468, 757, 758, 803, 815
Bse118I RCCGGY 2 cut(s) 136, 719
Bse1I ACTGG 1 cut(s) 592
Bse21I CCTNAGG 1 cut(s) 906
Bse3DI GCAATG 1 cut(s) 950
Bse8I GATNNNNATC 1 cut(s) 491
BseBI CCWGG 1 cut(s) 861
BseDI CCNNGG 3 cut(s) 409, 534, 859
BseGI GGATG 3 cut(s) 432, 438, 833
BseJI GATNNNNATC 1 cut(s) 491
BseLI CCNNNNNNNGG 7 cut(s) 149, 276, 468, 757, 758, 803, 815
BseMI GCAATG 1 cut(s) 950
BseMII CTCAG 5 cut(s) 215, 534, 812, 897, 903
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 5 cut(s) 44, 223, 234, 259, 451
BseSI GKGCMC 3 cut(s) 553, 752, 809
BseXI GCAGC 3 cut(s) 168, 207, 504
BseYI CCCAGC 1 cut(s) 751
Bsh1236I CGCG 2 cut(s) 249, 581
BshFI GGCC 4 cut(s) 796, 807, 843, 852
BshNI GGYRCC 2 cut(s) 139, 747
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 4 cut(s) 137, 143, 720, 944
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 7 cut(s) 149, 276, 468, 757, 758, 803, 815
BsmAI GTCTC 3 cut(s) 166, 246, 908
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 4 cut(s) 796, 807, 843, 852
Bso31I GGTCTC 1 cut(s) 908
BsoBI CYCGRG 1 cut(s) 533
Bsp120I GGGCCC 1 cut(s) 805
Bsp1286I GDGCHC 3 cut(s) 553, 752, 809
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 5 cut(s) 361, 456, 492, 599, 936
Bsp19I CCATGG 1 cut(s) 409
BspANI GGCC 4 cut(s) 796, 807, 843, 852
BspCNI CTCAG 5 cut(s) 216, 535, 811, 898, 904
BspFNI CGCG 2 cut(s) 249, 581
BspLI GGNNCC 6 cut(s) 141, 432, 749, 806, 807, 948
BspPI GGATC 3 cut(s) 369, 500, 931
BspT107I GGYRCC 2 cut(s) 139, 747
BspTNI GGTCTC 1 cut(s) 908
BsrBI CCGCTC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 950
BsrFI RCCGGY 2 cut(s) 136, 719
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 1 cut(s) 592
BssAI RCCGGY 2 cut(s) 136, 719
BssECI CCNNGG 3 cut(s) 409, 534, 859
BssMI GATC 5 cut(s) 361, 456, 492, 599, 936
BssNI GRCGYC 2 cut(s) 140, 506
BssT1I CCWWGG 1 cut(s) 409
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 1 cut(s) 666
BstACI GRCGYC 2 cut(s) 140, 506
BstAUI TGTACA 1 cut(s) 678
BstC8I GCNNGC 5 cut(s) 13, 17, 138, 179, 400
BstDEI CTNAG 5 cut(s) 224, 543, 798, 906, 912
BstDSI CCRYGG 1 cut(s) 409
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 3 cut(s) 432, 438, 833
BstFNI CGCG 2 cut(s) 249, 581
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 3 cut(s) 142, 251, 287
BstKTI GATC 5 cut(s) 364, 459, 495, 602, 939
BstMAI GTCTC 3 cut(s) 166, 246, 908
BstMBI GATC 5 cut(s) 361, 456, 492, 599, 936
BstMWI GCNNNNNNNGC 3 cut(s) 414, 548, 849
BstNI CCWGG 1 cut(s) 861
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 859, 942
BstSLI GKGCMC 3 cut(s) 553, 752, 809
BstUI CGCG 2 cut(s) 249, 581
BstV1I GCAGC 3 cut(s) 168, 207, 504
BstV2I GAAGAC 1 cut(s) 720
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
Bsu36I CCTNAGG 1 cut(s) 906
BsuRI GGCC 4 cut(s) 796, 807, 843, 852
BtgI CCRYGG 1 cut(s) 409
BtsCI GGATG 3 cut(s) 432, 438, 833
BtsI GCAGTG 2 cut(s) 424, 623
BtsIMutI CAGTG 3 cut(s) 424, 623, 806
Cac8I GCNNGC 5 cut(s) 13, 17, 138, 179, 400
CfoI GCGC 3 cut(s) 142, 251, 287
Cfr10I RCCGGY 2 cut(s) 136, 719
Cfr13I GGNCC 6 cut(s) 697, 779, 794, 805, 806, 850
CseI GACGC 1 cut(s) 183
Csp6I GTAC 3 cut(s) 124, 526, 679
CviAII CATG 2 cut(s) 410, 785
CviQI GTAC 3 cut(s) 124, 526, 679
DdeI CTNAG 5 cut(s) 224, 543, 798, 906, 912
DinI GGCGCC 1 cut(s) 141
DpnI GATC 5 cut(s) 363, 458, 494, 601, 938
DpnII GATC 5 cut(s) 361, 456, 492, 599, 936
DraIII CACNNNGTG 1 cut(s) 238
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 654
Eco130I CCWWGG 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 809
Eco31I GGTCTC 1 cut(s) 908
Eco47I GGWCC 2 cut(s) 697, 779
Eco81I CCTNAGG 1 cut(s) 906
Eco88I CYCGRG 1 cut(s) 533
Eco91I GGTNACC 1 cut(s) 449
EcoO109I RGGNCCY 2 cut(s) 779, 805
EcoO65I GGTNACC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 809
EgeI GGCGCC 1 cut(s) 141
EheI GGCGCC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 409
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 2 cut(s) 413, 788
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 409, 784
FauI CCCGC 1 cut(s) 24
FblI GTMKAC 1 cut(s) 871
Fnu4HI GCNGC 9 cut(s) 20, 182, 221, 264, 293, 370, 415, 518, 593
FokI GGATG 3 cut(s) 425, 439, 820
FriOI GRGCYC 1 cut(s) 809
Fsp4HI GCNGC 9 cut(s) 20, 182, 221, 264, 293, 370, 415, 518, 593
FspBI CTAG 1 cut(s) 776
GlaI GCGC 3 cut(s) 141, 250, 286
GluI GCNGC 9 cut(s) 20, 182, 221, 264, 293, 370, 415, 518, 593
GsaI CCCAGC 1 cut(s) 755
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 4 cut(s) 796, 807, 843, 852
HapII CCGG 4 cut(s) 137, 143, 720, 944
HgaI GACGC 1 cut(s) 183
HhaI GCGC 3 cut(s) 142, 251, 287
Hin1I GRCGYC 2 cut(s) 140, 506
Hin1II CATG 2 cut(s) 413, 788
Hin6I GCGC 3 cut(s) 140, 249, 285
HinP1I GCGC 3 cut(s) 140, 249, 285
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 5 cut(s) 229, 337, 343, 740, 927
HpaI GTTAAC 1 cut(s) 585
HpaII CCGG 4 cut(s) 137, 143, 720, 944
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 5 cut(s) 526, 551, 585, 634, 872
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 2 cut(s) 704, 837
Hpy8I GTNNAC 5 cut(s) 526, 551, 585, 634, 872
Hpy99I CGWCG 2 cut(s) 581, 736
HpyAV CCTTC 4 cut(s) 352, 710, 863, 874
HpyCH4III ACNGT 1 cut(s) 666
HpyCH4IV ACGT 2 cut(s) 57, 506
HpyCH4V TGCA 3 cut(s) 520, 551, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 414, 548, 849
HpyF3I CTNAG 5 cut(s) 224, 543, 798, 906, 912
HpySE526I ACGT 2 cut(s) 57, 506
Hsp92I GRCGYC 2 cut(s) 140, 506
Hsp92II CATG 2 cut(s) 413, 788
HspAI GCGC 3 cut(s) 140, 249, 285
KasI GGCGCC 1 cut(s) 139
KroI GCCGGC 1 cut(s) 136
KroNI GCCGGC 1 cut(s) 138
KspAI GTTAAC 1 cut(s) 585
Kzo9I GATC 5 cut(s) 361, 456, 492, 599, 936
LmnI GCTCC 3 cut(s) 210, 641, 946
Lsp1109I GCAGC 3 cut(s) 168, 207, 504
LweI GCATC 2 cut(s) 329, 610
MaeI CTAG 1 cut(s) 776
MaeII ACGT 2 cut(s) 57, 506
MaeIII GTNAC 1 cut(s) 449
MalI GATC 5 cut(s) 363, 458, 494, 601, 938
MbiI CCGCTC 1 cut(s) 292
MboI GATC 5 cut(s) 361, 456, 492, 599, 936
MboII GAAGA 3 cut(s) 73, 629, 725
MfeI CAATTG 1 cut(s) 845
MflI RGATCY 1 cut(s) 456
MhlI GDGCHC 3 cut(s) 553, 752, 809
MluCI AATT 3 cut(s) 41, 605, 845
Mly113I GGCGCC 1 cut(s) 140
MlyI GAGTC 1 cut(s) 337
MroNI GCCGGC 1 cut(s) 136
MseI TTAA 1 cut(s) 584
MslI CAYNNNNRTG 1 cut(s) 447
MspI CCGG 4 cut(s) 137, 143, 720, 944
MspR9I CCNGG 2 cut(s) 861, 944
MunI CAATTG 1 cut(s) 845
MvaI CCWGG 1 cut(s) 861
MvnI CGCG 2 cut(s) 249, 581
MwoI GCNNNNNNNGC 3 cut(s) 414, 548, 849
NaeI GCCGGC 1 cut(s) 138
NarI GGCGCC 1 cut(s) 140
NciI CCSGG 1 cut(s) 944
NcoI CCATGG 1 cut(s) 409
NdeII GATC 5 cut(s) 361, 456, 492, 599, 936
NgoMIV GCCGGC 1 cut(s) 136
NlaIII CATG 2 cut(s) 413, 788
NlaIV GGNNCC 6 cut(s) 141, 432, 749, 806, 807, 948
NmuCI GTSAC 1 cut(s) 449
OliI CACNNNNGTG 1 cut(s) 447
PdiI GCCGGC 1 cut(s) 138
PfeI GAWTC 4 cut(s) 229, 337, 740, 927
PflMI CCANNNNNTGG 1 cut(s) 815
PkrI GCNGC 9 cut(s) 21, 183, 222, 265, 294, 371, 416, 519, 594
PleI GAGTC 1 cut(s) 337
PluTI GGCGCC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 779
Psp5II RGGWCCY 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 859
PspEI GGTNACC 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 751
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 6 cut(s) 141, 432, 749, 806, 807, 948
PspOMI GGGCCC 1 cut(s) 805
PspPI GGNCC 6 cut(s) 697, 779, 794, 805, 806, 850
PspPPI RGGWCCY 1 cut(s) 779
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 3 cut(s) 125, 527, 680
RsaNI GTAC 3 cut(s) 124, 526, 679
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 1 cut(s) 584
SatI GCNGC 9 cut(s) 20, 182, 221, 264, 293, 370, 415, 518, 593
Sau3AI GATC 5 cut(s) 361, 456, 492, 599, 936
Sau96I GGNCC 6 cut(s) 697, 779, 794, 805, 806, 850
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 2 cut(s) 861, 944
SduI GDGCHC 3 cut(s) 553, 752, 809
SetI ASST 9 cut(s) 60, 78, 164, 215, 436, 509, 646, 690, 781
SfaNI GCATC 2 cut(s) 329, 610
SfiI GGCCNNNNNGGCC 1 cut(s) 849
SfoI GGCGCC 1 cut(s) 141
SinI GGWCC 2 cut(s) 697, 779
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 2 cut(s) 214, 865
SmoI CTYRAG 2 cut(s) 214, 865
Sse9I AATT 3 cut(s) 41, 605, 845
SspDI GGCGCC 1 cut(s) 139
SspMI CTAG 1 cut(s) 776
StyD4I CCNGG 2 cut(s) 859, 942
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 666
TaiI ACGT 2 cut(s) 60, 509
TaqI TCGA 6 cut(s) 27, 120, 206, 302, 602, 830
TaqII GACCGA 1 cut(s) 932
TasI AATT 3 cut(s) 41, 605, 845
TatI WGTACW 3 cut(s) 123, 525, 678
TauI GCSGC 6 cut(s) 22, 266, 295, 372, 417, 595
TfiI GAWTC 4 cut(s) 229, 337, 740, 927
Tru1I TTAA 1 cut(s) 584
Tru9I TTAA 1 cut(s) 584
TscAI CASTG 3 cut(s) 424, 630, 806
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 3 cut(s) 181, 220, 517
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 3 cut(s) 427, 630, 919
TspGWI ACGGA 3 cut(s) 65, 102, 749
TspRI CASTG 3 cut(s) 424, 630, 806
Van91I CCANNNNNTGG 1 cut(s) 815
VneI GTGCAC 1 cut(s) 549
VpaK11BI GGWCC 2 cut(s) 697, 779
XapI RAATTY 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 2 cut(s) 192, 844
XmiI GTMKAC 1 cut(s) 871
XspI CTAG 1 cut(s) 776
ZraI GACGTC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.