Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Forward (+)

14233411 .. 14240626

Gene Structure 7216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG162900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTTCCCTTTGCTGTCTTGGTTTTTGCGGTGAAACCGTTGCAGCTGAAAGGTTCACCTCCTACTGAATCGACAGAGCTTTTGGAATCTATTGAAACTAGTCCTTTAATAGCAGAATCAGATATCCCAAATATAAATGGTTGTGTGACAATTGACTGCGATGTGACTTCTTGTGAGCTCAGTTCAACGATCAAAGCAAGATTTCACAATGGAAGCCGAAAATCCACAGATTCTACCATGGGAGAGCAAGAGATGGAGGGTGGAGCACTCAAACTGAGAGAATGTGCACCCATTTTCTTGGAATCCGCAAAAGGCCTGAAATACATTCATGAAGACATTAAGAAGGCACATATATTCTTCAGCAATAGCCTGCTGAAAATTGGAGATTTTGGCCTTGGTGAGTTCACTTTTGGTTTTACATTGAATAGAACTAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

146

Amino Acids

15.96

Weight (kDa)

5.38

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 306
AcuI	CTGAAG	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	95, 186, 424
AhlI	ACTAGT	1 cut(s)	98
AluBI	AGCT	3 cut(s)	46, 79, 178
AluI	AGCT	3 cut(s)	46, 79, 178
Alw21I	GWGCWC	3 cut(s)	180, 268, 289
Alw44I	GTGCAC	1 cut(s)	285
AoxI	GGCC	2 cut(s)	313, 391
ApaLI	GTGCAC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	43
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AsuHPI	GGTGA	3 cut(s)	43, 48, 410
BaeGI	GKGCMC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	3 cut(s)	180, 268, 289
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	247
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	237, 394
BseDI	CCNNGG	2 cut(s)	237, 394
BseMII	CTCAG	2 cut(s)	193, 266
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	315, 393
BsiHKAI	GWGCWC	3 cut(s)	180, 268, 289
BsnI	GGCC	2 cut(s)	315, 393
Bsp1286I	GDGCHC	3 cut(s)	180, 268, 289
Bsp143I	GATC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	2 cut(s)	29, 306
BspANI	GGCC	2 cut(s)	315, 393
BspCNI	CTCAG	2 cut(s)	192, 267
BspHI	TCATGA	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	237, 394
BssMI	GATC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	237, 394
Bst4CI	ACNGT	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	3 cut(s)	179, 275, 432
BstDSI	CCRYGG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	315, 393
BtgI	CCRYGG	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	371
CciI	TCATGA	1 cut(s)	328
CviAII	CATG	2 cut(s)	238, 329
CviJI	RGCY	7 cut(s)	46, 79, 178, 216, 315, 369, 393
CviKI_1	RGCY	7 cut(s)	46, 79, 178, 216, 315, 369, 393
DdeI	CTNAG	3 cut(s)	179, 275, 432
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	237, 394
Eco147I	AGGCCT	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	237, 394
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	2 cut(s)	237, 394
FaeI	CATG	2 cut(s)	241, 332
FaiI	YATR	5 cut(s)	134, 239, 330, 351, 353
FatI	CATG	2 cut(s)	237, 328
Fnu4HI	GCNGC	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	315, 393
Hin1II	CATG	2 cut(s)	241, 332
HinfI	GANTC	5 cut(s)	68, 86, 116, 230, 302
HphI	GGTGA	3 cut(s)	43, 48, 410
Hpy166II	GTNNAC	3 cut(s)	56, 287, 405
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	3 cut(s)	56, 287, 405
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	43, 287
HpyF3I	CTNAG	3 cut(s)	179, 275, 432
Hsp92II	CATG	2 cut(s)	241, 332
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	2 cut(s)	329, 383
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	145, 163
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	2 cut(s)	344, 349
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	3 cut(s)	180, 268, 289
MluCI	AATT	2 cut(s)	150, 378
MnlI	CCTC	2 cut(s)	69, 250
MseI	TTAA	3 cut(s)	107, 339, 439
MspA1I	CMGCKG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	2 cut(s)	241, 332
NmuCI	GTSAC	2 cut(s)	145, 163
PagI	TCATGA	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	315
PfeI	GAWTC	5 cut(s)	68, 86, 116, 230, 302
PkrI	GCNGC	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	107, 339, 439
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	189
SduI	GDGCHC	3 cut(s)	180, 268, 289
SetI	ASST	5 cut(s)	48, 55, 61, 81, 180
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	2 cut(s)	150, 378
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	29, 306
SspMI	CTAG	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	237, 394
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	150, 378
TfiI	GAWTC	5 cut(s)	68, 86, 116, 230, 302
Tru1I	TTAA	3 cut(s)	107, 339, 439
Tru9I	TTAA	3 cut(s)	107, 339, 439
TseFI	GTSAC	2 cut(s)	145, 163
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	2 cut(s)	145, 163
TspDTI	ATGAA	2 cut(s)	317, 345
VneI	GTGCAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.