Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Forward (+)

19403509 .. 19414093

Gene Structure 10585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG113800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAGAAGGATCGTGGCGGCGGTGTTGAGGCCCTGGTTATTTGGGCTGGCGAAAGCCATGGCGGCAGTGCAAGGATGGAACGTTTCATCCACGATGGTGACCAGATCTCCTCGTCTGGGTCGCCTCCTACAAGGATTGGGATAGGTGCTTTGACGTCTATGTGGCTGCAATTGTACTTCCCCGAGGGTGCTGAGGGTGCATGGCTTTGGTATGCCAGCGAAGCCGTCGCGTTAACTGGGCGGCAGAGATCGGGATTTGTTGATGAAGATGCACTGCTCGTTTGCGGCGGAGCAAATAGAACCATTGGGCTACCGTTGGGCGAGATGTACAACGAGGCTGTGATGGTCCTTCACGACCCAGAAGACACCGGCAGTCCGGCGACGGAGGATTCGGGGTGCCCAGCGTTGGGTGTCCTCATCAAACTGGGTCCTCATGGTATTGGGCCTCAGTGGGGCCCATTCTTTGGGCTTGGCTGTTCGACACCCAGAGGTCTGATGTTGATGCAATTTTGGAACGGCCGCCCGCTAGAGCTGTGGTCAAAAGGCTTGCCGCCGGAGGATACGACAGTGGCGGAGGCAAAGAAGCAACATGAGGCTCCTCTTCTAAGACATCAAGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.19

Weight (kDa)

5.1

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	396
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccII	CGCG	1 cut(s)	230
AclI	AACGTT	1 cut(s)	82
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	517
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	176, 329
AfiI	CCNNNNNNNGG	5 cut(s)	117, 406, 407, 452, 464
AjnI	CCWGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	96
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	1 cut(s)	532
AluI	AGCT	1 cut(s)	532
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	4 cut(s)	30, 443, 454, 517
ApaI	GGGCCC	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	166
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AspS9I	GGNCC	6 cut(s)	31, 346, 428, 443, 454, 455
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	2 cut(s)	346, 428
BaeGI	GKGCMC	2 cut(s)	401, 458
BaeI	ACNNNNGTAYC	2 cut(s)	552, 585
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	369
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	3 cut(s)	70, 89, 337
BceAI	ACGGC	2 cut(s)	209, 532
BciT130I	CCWGG	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	553
BfaI	CTAG	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	553
BglI	GCCNNNNNGGC	1 cut(s)	63
BglII	AGATCT	1 cut(s)	105
BisI	GCNGC	7 cut(s)	19, 64, 167, 242, 286, 520, 551
BlsI	GCNGC	7 cut(s)	20, 65, 168, 243, 287, 521, 552
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	2 cut(s)	346, 428
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	6 cut(s)	31, 346, 428, 443, 454, 455
BmiI	GGNNCC	5 cut(s)	398, 429, 455, 456, 597
BmrFI	CCNGG	1 cut(s)	35
BmrI	ACTGGG	2 cut(s)	246, 434
BmsI	GCATC	2 cut(s)	259, 492
BmuI	ACTGGG	2 cut(s)	246, 434
BpiI	GAAGAC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	33, 58, 183
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 406, 407, 452, 464
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	241, 429
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	33, 58, 183
BseGI	GGATG	2 cut(s)	81, 87
BseLI	CCNNNNNNNGG	5 cut(s)	117, 406, 407, 452, 464
BseMII	CTCAG	2 cut(s)	183, 461
BseNI	ACTGG	2 cut(s)	241, 429
BseRI	GAGGAG	2 cut(s)	100, 588
BseSI	GKGCMC	2 cut(s)	401, 458
BseX3I	CGGCCG	1 cut(s)	517
BseXI	GCAGC	1 cut(s)	153
BseYI	CCCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	520
BshFI	GGCC	4 cut(s)	32, 445, 456, 519
BshNI	GGYRCC	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	3 cut(s)	369, 377, 554
BslI	CCNNNNNNNGG	5 cut(s)	117, 406, 407, 452, 464
BsnI	GGCC	4 cut(s)	32, 445, 456, 519
BsoBI	CYCGRG	1 cut(s)	182
Bsp120I	GGGCCC	1 cut(s)	454
Bsp1286I	GDGCHC	2 cut(s)	401, 458
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	10, 105, 248
Bsp19I	CCATGG	1 cut(s)	58
BspANI	GGCC	4 cut(s)	32, 445, 456, 519
BspCNI	CTCAG	2 cut(s)	184, 460
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	5 cut(s)	398, 429, 455, 456, 597
BspPI	GGATC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	241, 429
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	3 cut(s)	33, 58, 183
BssMI	GATC	3 cut(s)	10, 105, 248
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	315, 568
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	4 cut(s)	49, 217, 524, 548
BstDEI	CTNAG	3 cut(s)	192, 447, 605
BstDSI	CCRYGG	1 cut(s)	58
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	81, 87
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	3 cut(s)	13, 108, 251
BstMBI	GATC	3 cut(s)	10, 105, 248
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 197, 221
BstNI	CCWGG	1 cut(s)	35
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	33
BstSLI	GKGCMC	2 cut(s)	401, 458
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BstZI	CGGCCG	1 cut(s)	517
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	4 cut(s)	32, 445, 456, 519
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	81, 87
BtsI	GCAGTG	2 cut(s)	73, 272
BtsIMutI	CAGTG	4 cut(s)	73, 272, 455, 573
Cac8I	GCNNGC	4 cut(s)	49, 217, 524, 548
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	6 cut(s)	31, 346, 428, 443, 454, 455
Csp6I	GTAC	2 cut(s)	175, 328
CviAII	CATG	4 cut(s)	59, 201, 434, 590
CviQI	GTAC	2 cut(s)	175, 328
DdeI	CTNAG	3 cut(s)	192, 447, 605
DpnI	GATC	3 cut(s)	12, 107, 250
DpnII	GATC	3 cut(s)	10, 105, 248
EaeI	YGGCCR	1 cut(s)	517
EagI	CGGCCG	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
EciI	GGCGGA	2 cut(s)	303, 587
EclXI	CGGCCG	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	346, 428
Eco52I	CGGCCG	1 cut(s)	517
Eco88I	CYCGRG	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	98
EcoO109I	RGGNCCY	3 cut(s)	31, 428, 454
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	4 cut(s)	62, 204, 437, 593
FaiI	YATR	6 cut(s)	60, 161, 202, 213, 435, 591
FatI	CATG	4 cut(s)	58, 200, 433, 589
FauI	CCCGC	1 cut(s)	531
Fnu4HI	GCNGC	7 cut(s)	19, 64, 167, 242, 286, 520, 551
FokI	GGATG	2 cut(s)	74, 88
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	7 cut(s)	19, 64, 167, 242, 286, 520, 551
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	7 cut(s)	19, 64, 167, 242, 286, 520, 551
GsaI	CCCAGC	1 cut(s)	404
HaeIII	GGCC	4 cut(s)	32, 445, 456, 519
HapII	CCGG	3 cut(s)	369, 377, 554
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	62, 204, 437, 593
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	1 cut(s)	389
HpaI	GTTAAC	1 cut(s)	234
HpaII	CCGG	3 cut(s)	369, 377, 554
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	495
Hpy188III	TCNNGA	2 cut(s)	252, 353
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	2 cut(s)	230, 385
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	315, 568
HpyCH4IV	ACGT	2 cut(s)	82, 155
HpyCH4V	TGCA	5 cut(s)	71, 169, 200, 272, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 197, 221
HpyF3I	CTNAG	3 cut(s)	192, 447, 605
HpySE526I	ACGT	2 cut(s)	82, 155
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	62, 204, 437, 593
KspAI	GTTAAC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	10, 105, 248
LmnI	GCTCC	2 cut(s)	290, 601
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	2 cut(s)	259, 492
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	2 cut(s)	82, 155
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	12, 107, 250
MboI	GATC	3 cut(s)	10, 105, 248
MboII	GAAGA	3 cut(s)	278, 374, 593
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	401, 458
MluCI	AATT	2 cut(s)	170, 506
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	3 cut(s)	369, 377, 554
MspR9I	CCNGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	63, 197, 221
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	3 cut(s)	10, 105, 248
NlaIII	CATG	4 cut(s)	62, 204, 437, 593
NlaIV	GGNNCC	5 cut(s)	398, 429, 455, 456, 597
NmuCI	GTSAC	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	389
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	7 cut(s)	20, 65, 168, 243, 287, 521, 552
PpuMI	RGGWCCY	1 cut(s)	428
Psp1406I	AACGTT	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	33
PspEI	GGTNACC	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	5 cut(s)	398, 429, 455, 456, 597
PspOMI	GGGCCC	1 cut(s)	454
PspPI	GGNCC	6 cut(s)	31, 346, 428, 443, 454, 455
PspPPI	RGGWCCY	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	2 cut(s)	176, 329
RsaNI	GTAC	2 cut(s)	175, 328
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	7 cut(s)	19, 64, 167, 242, 286, 520, 551
Sau3AI	GATC	3 cut(s)	10, 105, 248
Sau96I	GGNCC	6 cut(s)	31, 346, 428, 443, 454, 455
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	2 cut(s)	401, 458
SetI	ASST	5 cut(s)	85, 148, 158, 493, 534
SfaNI	GCATC	2 cut(s)	259, 492
SinI	GGWCC	2 cut(s)	346, 428
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	170, 506
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	315, 568
TaiI	ACGT	2 cut(s)	85, 158
TaqI	TCGA	1 cut(s)	479
TasI	AATT	2 cut(s)	170, 506
TatI	WGTACW	2 cut(s)	174, 327
TauI	GCSGC	6 cut(s)	21, 66, 244, 288, 522, 553
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	4 cut(s)	73, 279, 455, 573
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	76, 279
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	4 cut(s)	73, 279, 455, 573
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	346, 428
XspI	CTAG	1 cut(s)	527
ZraI	GACGTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.