Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Forward (+)

37708251 .. 37710678

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCAAATTTCATCTCCAGGTCTGTTTACTGTTGCTAAATTGGTTGGATGTAGCCCGGAGGAGCTTACACTTGCTTTATCAATTAAGAGATTGGACATTAACATCCTTGTGATCATTCTCATTGGTCTGCAATCTCAGCTCCAAAGCCTTCCTGGTTCTCCCCCGAAAGCAATAGCCAGCAATGGGGTCAATGAGAGCATAGGGATTTACGATGAGAGCAGAATTTGCCATGCCAGTACCGAGATTCAGCTGTTATGTCGGTGTAGGAAGGCTGTTAAGAGGATTATTATGATGTCAGAGCTAGTCCACAATCCTTTTAGGCTGATTGGAGTTGGGTTATCTATTTGGACATTTGCCACAGCCGGGTGTGGTAGTTCATTTAATTTATGGTCCATTGCAATATGTCGCATGCTAGTTGGAGTCGGTGAGGCATCTTTCATAAGTCTTGCAGCTCCGTTCATTGATGACCATGTCCCTGCAGATCAGGTGGGAGAGAGCATCAATTGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

170

Amino Acids

18.35

Weight (kDa)

6.81

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	6, 222
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	183, 363
AjnI	CCWGG	2 cut(s)	16, 151
AluBI	AGCT	5 cut(s)	64, 139, 250, 301, 452
AluI	AGCT	5 cut(s)	64, 139, 250, 301, 452
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	6, 222
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	2 cut(s)	56, 364
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	461
BciT130I	CCWGG	2 cut(s)	18, 153
BclI	TGATCA	1 cut(s)	111
BcnI	CCSGG	2 cut(s)	56, 364
BfaI	CTAG	2 cut(s)	302, 413
BfmI	CTRYAG	1 cut(s)	477
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	4 cut(s)	18, 56, 153, 364
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	390
BmrFI	CCNGG	4 cut(s)	18, 56, 153, 364
BmsI	GCATC	2 cut(s)	440, 507
BpuMI	CCSGG	2 cut(s)	56, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 363
Bse1I	ACTGG	1 cut(s)	234
Bse3DI	GCAATG	2 cut(s)	187, 393
BseBI	CCWGG	2 cut(s)	18, 153
BseGI	GGATG	2 cut(s)	53, 102
BseLI	CCNNNNNNNGG	2 cut(s)	183, 363
BseMI	GCAATG	2 cut(s)	187, 393
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	461
BsiSI	CCGG	2 cut(s)	56, 363
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	2 cut(s)	183, 363
BsmFI	GGGAC	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	111, 481
BspCNI	CTCAG	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	481
BsrDI	GCAATG	2 cut(s)	187, 393
BsrI	ACTGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	111, 481
Bst2UI	CCWGG	2 cut(s)	18, 153
Bst4CI	ACNGT	1 cut(s)	31
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	178, 410
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	53, 102
BstKTI	GATC	2 cut(s)	114, 484
BstMBI	GATC	2 cut(s)	111, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 225
BstNI	CCWGG	2 cut(s)	18, 153
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	4 cut(s)	16, 54, 151, 362
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	461
BtsCI	GGATG	2 cut(s)	53, 102
Cac8I	GCNNGC	2 cut(s)	178, 410
Cfr13I	GGNCC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	3 cut(s)	230, 409, 470
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	2 cut(s)	113, 483
DpnII	GATC	2 cut(s)	111, 481
Eco47I	GGWCC	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	16, 151
FaeI	CATG	3 cut(s)	233, 412, 473
FaiI	YATR	9 cut(s)	200, 231, 256, 290, 388, 403, 410, 440, 471
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	3 cut(s)	229, 408, 469
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	2 cut(s)	60, 89
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	2 cut(s)	302, 413
GluI	GCNGC	1 cut(s)	450
HapII	CCGG	2 cut(s)	56, 363
Hin1II	CATG	3 cut(s)	233, 412, 473
HinfI	GANTC	2 cut(s)	244, 420
HpaII	CCGG	2 cut(s)	56, 363
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	27, 307
Hpy188I	TCNGA	1 cut(s)	298
Hpy8I	GTNNAC	2 cut(s)	27, 307
HpyAV	CCTTC	2 cut(s)	158, 262
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	5 cut(s)	4, 130, 398, 449, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 225
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	233, 412, 473
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	111, 481
LmnI	GCTCC	3 cut(s)	61, 144, 457
Lsp1109I	GCAGC	1 cut(s)	461
LweI	GCATC	2 cut(s)	440, 507
MaeI	CTAG	2 cut(s)	302, 413
MalI	GATC	2 cut(s)	113, 483
MboI	GATC	2 cut(s)	111, 481
MfeI	CAATTG	1 cut(s)	502
MluCI	AATT	6 cut(s)	6, 38, 81, 222, 382, 502
MlyI	GAGTC	1 cut(s)	429
MmeI	TCCRAC	2 cut(s)	25, 397
MnlI	CCTC	3 cut(s)	52, 273, 421
MseI	TTAA	4 cut(s)	84, 99, 276, 381
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	2 cut(s)	56, 363
MspR9I	CCNGG	4 cut(s)	18, 56, 153, 364
MunI	CAATTG	1 cut(s)	502
MvaI	CCWGG	2 cut(s)	18, 153
MwoI	GCNNNNNNNGC	2 cut(s)	136, 225
NciI	CCSGG	2 cut(s)	56, 364
NdeII	GATC	2 cut(s)	111, 481
NlaIII	CATG	3 cut(s)	233, 412, 473
NspI	RCATGY	1 cut(s)	412
PaeI	GCATGC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	244
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Psp6I	CCWGG	2 cut(s)	16, 151
PspGI	CCWGG	2 cut(s)	16, 151
PspPI	GGNCC	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	481
PsyI	GACNNNGTC	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	84, 99, 276, 381
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	2 cut(s)	111, 481
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	4 cut(s)	18, 56, 153, 364
SetI	ASST	7 cut(s)	22, 66, 141, 252, 303, 454, 489
SfaNI	GCATC	2 cut(s)	440, 507
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	107
SphI	GCATGC	1 cut(s)	412
Sse9I	AATT	6 cut(s)	6, 38, 81, 222, 382, 502
SspMI	CTAG	2 cut(s)	302, 413
StyD4I	CCNGG	4 cut(s)	16, 54, 151, 362
TaaI	ACNGT	1 cut(s)	31
TasI	AATT	6 cut(s)	6, 38, 81, 222, 382, 502
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	4 cut(s)	84, 99, 276, 381
Tru9I	TTAA	4 cut(s)	84, 99, 276, 381
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	366, 427, 448
TspGWI	ACGGA	1 cut(s)	444
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	2 cut(s)	6, 222
XceI	RCATGY	1 cut(s)	412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XspI	CTAG	2 cut(s)	302, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.