Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Reverse (-)

44805162 .. 44810620

Gene Structure 5459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25248

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTTGGGCTTCTCGTGGTCTCACCCATCTTTGCATTCTTGGCAAAGAGCCACAATCCTTTTAGGCTGATTGGACTTGGGTTATCTATTTGGACATTTGCCACAGCTGGGAGTGGTAGTTCATTTAATTTCTGGTCCATTGCAATATGTCGCATGCTGCTTGGAGTCGGTAAGGTATCTTTTATAAGTCTTGCAGCTCCATTCATTGATGAATGCACCTGCAGATCAGAATCAGAATGGCTGGCAATATTTTACATGTGTATACCGACTGGAGTTGCTAACTGGAGTTGCTATAGGCTATGTTTCCAGCGGATTTGCATTGTTTCCCAATATATGGTTGACGGAGGTCTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

118

Amino Acids

13.01

Weight (kDa)

8.21

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	262
AciI	CCGC	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	108, 334
AflIII	ACRYGT	1 cut(s)	255
AloI	GAACNNNNNNTCC	2 cut(s)	103, 135
AluBI	AGCT	2 cut(s)	107, 197
AluI	AGCT	2 cut(s)	107, 197
Alw26I	GTCTC	2 cut(s)	25, 353
ApeKI	GCWGC	2 cut(s)	157, 194
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	144, 206
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	25, 353
BfmI	CTRYAG	2 cut(s)	220, 292
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	158, 195
BlsI	GCNGC	2 cut(s)	159, 196
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BoxI	GACNNNNGTC	1 cut(s)	345
BpmI	CTGGAG	2 cut(s)	291, 304
BsaBI	GATNNNNATC	1 cut(s)	229
BsaI	GGTCTC	2 cut(s)	25, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 334
Bse1I	ACTGG	2 cut(s)	274, 287
Bse3DI	GCAATG	1 cut(s)	138
Bse8I	GATNNNNATC	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	108, 334
BseMI	GCAATG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	274, 287
BseXI	GCAGC	2 cut(s)	144, 206
BseYI	CCCAGC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	108, 334
BsmAI	GTCTC	2 cut(s)	25, 353
BsmI	GAATGC	2 cut(s)	35, 218
Bso31I	GGTCTC	2 cut(s)	25, 353
Bsp143I	GATC	1 cut(s)	224
BspACI	CCGC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	224
BspMI	ACCTGC	1 cut(s)	227
BspTNI	GGTCTC	2 cut(s)	25, 353
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	2 cut(s)	274, 287
BssMI	GATC	1 cut(s)	224
BssNAI	GTATAC	1 cut(s)	263
BssSI	CACGAG	1 cut(s)	14
Bst1107I	GTATAC	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	155, 243
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	2 cut(s)	25, 353
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNSI	RCATGY	2 cut(s)	157, 259
BstPAI	GACNNNNGTC	1 cut(s)	345
BstSFI	CTRYAG	2 cut(s)	220, 292
BstV1I	GCAGC	2 cut(s)	144, 206
BstZ17I	GTATAC	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	155, 243
Cfr13I	GGNCC	1 cut(s)	135
CviAII	CATG	2 cut(s)	154, 256
CviJI	RGCY	7 cut(s)	10, 51, 67, 107, 197, 241, 298
CviKI_1	RGCY	7 cut(s)	10, 51, 67, 107, 197, 241, 298
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
Eco31I	GGTCTC	2 cut(s)	25, 353
Eco47I	GGWCC	1 cut(s)	135
FaeI	CATG	2 cut(s)	157, 259
FaiI	YATR	9 cut(s)	148, 155, 185, 257, 263, 294, 301, 333, 335
FatI	CATG	2 cut(s)	153, 255
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	158, 195
Fsp4HI	GCNGC	2 cut(s)	158, 195
GluI	GCNGC	2 cut(s)	158, 195
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	2 cut(s)	291, 304
Hin1II	CATG	2 cut(s)	157, 259
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	165, 230
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	2 cut(s)	263, 340
Hpy188I	TCNGA	2 cut(s)	229, 235
Hpy8I	GTNNAC	2 cut(s)	263, 340
HpyCH4V	TGCA	6 cut(s)	35, 143, 194, 216, 222, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	157, 259
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	7 cut(s)	93, 118, 227, 232, 255, 268, 320
Lsp1109I	GCAGC	2 cut(s)	144, 206
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	1 cut(s)	338
MseI	TTAA	1 cut(s)	126
MspA1I	CMGCKG	2 cut(s)	107, 310
Mva1269I	GAATGC	2 cut(s)	35, 218
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	157, 259
NspI	RCATGY	2 cut(s)	157, 259
PaeI	GCATGC	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	227
PciI	ACATGT	1 cut(s)	255
PctI	GAATGC	2 cut(s)	35, 218
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	159, 196
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	1 cut(s)	255
PshAI	GACNNNNGTC	1 cut(s)	345
PsiI	TTATAA	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	135
PstI	CTGCAG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	158, 195
Sau3AI	GATC	1 cut(s)	224
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	174
SetI	ASST	5 cut(s)	109, 177, 199, 221, 349
SfcI	CTRYAG	2 cut(s)	220, 292
SinI	GGWCC	1 cut(s)	135
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	310
SspI	AATATT	1 cut(s)	249
TasI	AATT	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	2 cut(s)	157, 194
TspDTI	ATGAA	3 cut(s)	111, 193, 225
TspGWI	ACGGA	1 cut(s)	357
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	135
XceI	RCATGY	2 cut(s)	157, 259
XmiI	GTMKAC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.