FvH4_2g08420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001699
Physical Location & Seq
Reverse (-)
7327371 .. 7328020
650 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08420.t1

Sequence Viewer

Length: 318 bp
ATGGATTCACGATCTGGATCGAGGCTGCGTGGGGTTGGGATCATGAAGTTGGATGGCGTCCTCCTCTGGTGGTCTGACGGCGGCGACATGCGATGCATTTTTTACGGACGAGGCGGCAATCATGATGGCGACATGACTGCAACGACGACTGGTTCTTCCGACTGTGATGGTGTTCCTGTTTTGAATCGGATGTGGGTTTCTGACCCTGTCGGATTGTTAAAGATGGGGCTGAGGCGGCTTCTTGAGTTCGGGAGCGTTGCTTCGACTGTGATTAGGTGCGGCGATGACGCTCTCCATCAGGCATCGGAGCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.34

Weight (kDa)

5.81

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 81, 114, 235, 279
AclWI GGATC 2 cut(s) 25, 47
AcyI GRCGYC 1 cut(s) 57
AgsI TTSAA 1 cut(s) 184
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 2 cut(s) 25, 47
ApeKI GCWGC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 12
BccI CCATC 5 cut(s) 47, 119, 161, 217, 303
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BisI GCNGC 5 cut(s) 26, 82, 115, 236, 280
BlsI GCNGC 5 cut(s) 27, 83, 116, 237, 281
BmsI GCATC 2 cut(s) 83, 311
Bpu10I CCTNAGC 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 16
BseGI GGATG 2 cut(s) 58, 195
BseJI GATNNNNATC 1 cut(s) 16
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 11, 17, 39
BspACI CCGC 4 cut(s) 81, 114, 235, 279
BspCNI CTCAG 1 cut(s) 222
BspHI TCATGA 2 cut(s) 42, 121
BspPI GGATC 2 cut(s) 25, 47
BsrI ACTGG 1 cut(s) 154
BssMI GATC 3 cut(s) 11, 17, 39
BssNI GRCGYC 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 164, 268
BstACI GRCGYC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 2 cut(s) 58, 195
BstKTI GATC 3 cut(s) 14, 20, 42
BstMBI GATC 3 cut(s) 11, 17, 39
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 12
BtgZI GCGATG 2 cut(s) 106, 297
BtsCI GGATG 2 cut(s) 58, 195
CciI TCATGA 2 cut(s) 42, 121
CseI GACGC 2 cut(s) 46, 296
CviAII CATG 4 cut(s) 43, 88, 122, 133
CviJI RGCY 3 cut(s) 25, 229, 238
CviKI_1 RGCY 3 cut(s) 25, 229, 238
DdeI CTNAG 1 cut(s) 230
DpnI GATC 3 cut(s) 13, 19, 41
DpnII GATC 3 cut(s) 11, 17, 39
EcoT22I ATGCAT 1 cut(s) 98
FaeI CATG 4 cut(s) 46, 91, 125, 136
FaiI YATR 4 cut(s) 44, 89, 123, 134
FatI CATG 4 cut(s) 42, 87, 121, 132
Fnu4HI GCNGC 5 cut(s) 26, 82, 115, 236, 280
FokI GGATG 2 cut(s) 65, 202
Fsp4HI GCNGC 5 cut(s) 26, 82, 115, 236, 280
GluI GCNGC 5 cut(s) 26, 82, 115, 236, 280
HgaI GACGC 2 cut(s) 46, 296
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 4 cut(s) 46, 91, 125, 136
HinfI GANTC 2 cut(s) 5, 184
Hpy188I TCNGA 6 cut(s) 76, 160, 189, 202, 212, 307
Hpy188III TCNNGA 6 cut(s) 9, 15, 43, 122, 242, 250
Hpy99I CGWCG 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 164, 268
HpyCH4V TGCA 2 cut(s) 96, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 4 cut(s) 46, 91, 125, 136
Kzo9I GATC 3 cut(s) 11, 17, 39
LmnI GCTCC 2 cut(s) 252, 307
LpnPI CCDG 5 cut(s) 52, 135, 189, 219, 284
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 2 cut(s) 83, 311
MalI GATC 3 cut(s) 13, 19, 41
MboI GATC 3 cut(s) 11, 17, 39
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 312
MmeI TCCRAC 3 cut(s) 30, 183, 190
MnlI CCTC 5 cut(s) 15, 71, 74, 104, 225
Mph1103I ATGCAT 1 cut(s) 98
MseI TTAA 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 235
NdeII GATC 3 cut(s) 11, 17, 39
NlaIII CATG 4 cut(s) 46, 91, 125, 136
NsiI ATGCAT 1 cut(s) 98
NspI RCATGY 1 cut(s) 91
PagI TCATGA 2 cut(s) 42, 121
PfeI GAWTC 2 cut(s) 5, 184
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 5 cut(s) 27, 83, 116, 237, 281
PsyI GACNNNGTC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 5 cut(s) 26, 82, 115, 236, 280
Sau3AI GATC 3 cut(s) 11, 17, 39
SduI GDGCHC 1 cut(s) 312
SetI ASST 1 cut(s) 278
SfaNI GCATC 2 cut(s) 83, 311
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SsiI CCGC 4 cut(s) 81, 114, 235, 279
TaaI ACNGT 2 cut(s) 164, 268
TaqI TCGA 2 cut(s) 20, 263
TauI GCSGC 4 cut(s) 84, 117, 238, 282
TfiI GAWTC 2 cut(s) 5, 184
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 120
Tth111I GACNNNGTC 1 cut(s) 206
XceI RCATGY 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.