Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000332.1

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Reverse (-)

287944 .. 293922

Gene Structure 5979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000332.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

atggcacaaccaccacaatcaccgtcaaaattctccccattccctaatcctaattcccttccaccgatgacaaagaaccccaaggcagcaatctcagctccaaagccttcttggttctcccccgaaaggttgctgttaatcctgtgtctggttaacttgataaattatattgatcgaggagcaatagccagcaatggggtcaatgggagtattgggatttgcgatgagagcggaatttgccatgccggtaccggaattcagggggattttaaattgaacaactttcaagatggtgttctatcatctgcattcatggttgggcttctcgtggcctcacccatctttgcatccttggcaaagaggctgattggagttgggttatctatttggacatttgccacagctgggtgtggtagttcatttaatttctggtccattgcaatatgtcgcatgctggttggagtcggtgaggcatctttcataagtcttgcagctccgttcattgatgaccatgcccctgcagatcagaaatcagcatggctggcaatgttttacatgtgtataccaactggagtcgcaataggctatgtttacggcggatttgtgggagagagcatcaattggcgttgtgcattctggggagaggcccttctaatgcttccctttgctgtcttggaatcagagatcccaaatataagtggtcgtgtgacagttgactgcgatgagacttcttgctcatgccctacaaccaaattttttgaccaagtttcaagcttctcaaaggatttgaaagtacttcttcttgataaagtttacattgttaatgtattaggttatgtgtcatacaactttgtcattggaacctactcatactgggggccaaaggctggttataacatttaccatatgagtaatccagatctgatgttcggaggtattactattctctgtggaattataggaactttaactggagggctcgtccttgatgcagtgggtgctacaattcacaatgcttttaagcttcttgctggagcgacaatgctaggtgcaatattttgcttcagtgcgttttgtgcaaagagcctgcacatctttgctccagtaaattatgtgtctctgcactgcgtcaaaccagggctaaggccattgtctatggctatctcaactctttcaatccacatatttggtgatgttccttcctcgcctcttgtcggaatcattcaggattatgttcacaattggagggaaacgactctaatctttacctctgtctactttgttgcatcaggaatatggttcatagggatcttccttaatagtgtggacaagtttgaggaagatgatgaagaagaagtctctacattagttcaagccaacaaagaaccattgcttgaagagcaccacttaaggaaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

473

Amino Acids

51.19

Weight (kDa)

5.46

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	887
AccBSI	CCGCTC	1 cut(s)	231
AccI	GTMKAC	2 cut(s)	562, 1275
AciI	CCGC	2 cut(s)	231, 597
AclWI	GGATC	2 cut(s)	679, 1316
AcsI	RAATTY	4 cut(s)	29, 234, 255, 752
AcuI	CTGAAG	1 cut(s)	1048
AfaI	GTAC	2 cut(s)	250, 795
AfiI	CCNNNNNNNGG	6 cut(s)	126, 148, 195, 405, 887, 1214
AflII	CTTAAG	1 cut(s)	1408
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	7 cut(s)	277, 287, 771, 790, 1176, 1373, 1397
AjnI	CCWGG	1 cut(s)	1135
AluBI	AGCT	5 cut(s)	98, 404, 494, 774, 1024
AluI	AGCT	5 cut(s)	98, 404, 494, 774, 1024
Alw21I	GWGCWC	1 cut(s)	1404
Alw26I	GTCTC	3 cut(s)	719, 1122, 1363
AlwI	GGATC	2 cut(s)	679, 1316
AoxI	GGCC	4 cut(s)	330, 645, 878, 1145
ApeKI	GCWGC	2 cut(s)	86, 491
ApoI	RAATTY	4 cut(s)	29, 234, 255, 752
Asp718I	GGTACC	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	432, 646, 878
AsuHPI	GGTGA	4 cut(s)	12, 327, 479, 1202
AvaII	GGWCC	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	981
BauI	CACGAG	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	1404
BbvI	GCAGC	2 cut(s)	98, 503
BccI	CCATC	2 cut(s)	284, 347
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	1 cut(s)	1137
BcoDI	GTCTC	3 cut(s)	719, 1122, 1363
BfaI	CTAG	2 cut(s)	1046, 1420
BfmI	CTRYAG	1 cut(s)	519
BfrI	CTTAAG	1 cut(s)	1408
BglII	AGATCT	1 cut(s)	919
BisI	GCNGC	2 cut(s)	87, 492
BlsI	GCNGC	2 cut(s)	88, 493
BmcAI	AGTACT	1 cut(s)	795
Bme1390I	CCNGG	1 cut(s)	1137
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	3 cut(s)	432, 646, 878
BmiI	GGNNCC	3 cut(s)	250, 862, 879
BmrFI	CCNGG	1 cut(s)	1137
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	5 cut(s)	356, 482, 624, 979, 1295
BmuI	ACTGGG	1 cut(s)	883
BpmI	CTGGAG	4 cut(s)	591, 993, 1053, 1086
Bpu10I	CCTNAGC	1 cut(s)	1142
BsaJI	CCNNGG	3 cut(s)	81, 351, 1136
BsaWI	WCCGGW	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	966, 996
Bsc4I	CCNNNNNNNGG	6 cut(s)	126, 148, 195, 405, 887, 1214
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	4 cut(s)	574, 878, 976, 1103
Bse3DI	GCAATG	4 cut(s)	199, 435, 552, 1388
BseBI	CCWGG	1 cut(s)	1137
BseDI	CCNNGG	3 cut(s)	81, 351, 1136
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	6 cut(s)	126, 148, 195, 405, 887, 1214
BseMI	GCAATG	4 cut(s)	199, 435, 552, 1388
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	4 cut(s)	574, 878, 976, 1103
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	98, 503
BseYI	CCCAGC	1 cut(s)	404
BsgI	GTGCAG	2 cut(s)	1073, 1106
BshFI	GGCC	4 cut(s)	332, 647, 880, 1147
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	1404
BsiSI	CCGG	2 cut(s)	246, 252
BslI	CCNNNNNNNGG	6 cut(s)	126, 148, 195, 405, 887, 1214
BsmAI	GTCTC	3 cut(s)	719, 1122, 1363
BsmI	GAATGC	2 cut(s)	308, 632
BsnI	GGCC	4 cut(s)	332, 647, 880, 1147
Bsp1286I	GDGCHC	2 cut(s)	981, 1404
Bsp143I	GATC	5 cut(s)	172, 523, 684, 919, 1308
BspACI	CCGC	2 cut(s)	231, 597
BspANI	GGCC	4 cut(s)	332, 647, 880, 1147
BspCNI	CTCAG	1 cut(s)	107
BspLI	GGNNCC	3 cut(s)	250, 862, 879
BspMAI	CTGCAG	1 cut(s)	523
BspPI	GGATC	2 cut(s)	679, 1316
BspQI	GCTCTTC	1 cut(s)	1392
BspT107I	GGYRCC	1 cut(s)	248
BspTI	CTTAAG	1 cut(s)	1408
BsrBI	CCGCTC	1 cut(s)	231
BsrDI	GCAATG	4 cut(s)	199, 435, 552, 1388
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	4 cut(s)	574, 878, 976, 1103
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	3 cut(s)	81, 351, 1136
BssMI	GATC	5 cut(s)	172, 523, 684, 919, 1308
BssNAI	GTATAC	1 cut(s)	563
BssSI	CACGAG	1 cut(s)	326
BssT1I	CCWWGG	2 cut(s)	81, 351
Bst1107I	GTATAC	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	1137
Bst4CI	ACNGT	2 cut(s)	24, 712
Bst6I	CTCTTC	1 cut(s)	1392
BstAFI	CTTAAG	1 cut(s)	1408
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstC8I	GCNNGC	4 cut(s)	190, 452, 543, 1088
BstDEI	CTNAG	2 cut(s)	94, 1142
BstF5I	GGATG	1 cut(s)	347
BstKTI	GATC	5 cut(s)	175, 526, 687, 922, 1311
BstMAI	GTCTC	3 cut(s)	719, 1122, 1363
BstMBI	GATC	5 cut(s)	172, 523, 684, 919, 1308
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 228, 237, 353, 542, 998, 1076, 1399
BstNI	CCWGG	1 cut(s)	1137
BstNSI	RCATGY	2 cut(s)	454, 559
BstSCI	CCNGG	1 cut(s)	1135
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	98, 503
BstX2I	RGATCY	3 cut(s)	684, 919, 1308
BstXI	CCANNNNNNTGG	1 cut(s)	1187
BstYI	RGATCY	3 cut(s)	684, 919, 1308
BstZ17I	GTATAC	1 cut(s)	563
BsuRI	GGCC	4 cut(s)	332, 647, 880, 1147
BtgZI	GCGATG	2 cut(s)	237, 735
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	2 cut(s)	999, 1123
BtsIMutI	CAGTG	3 cut(s)	999, 1072, 1123
Cac8I	GCNNGC	4 cut(s)	190, 452, 543, 1088
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	3 cut(s)	432, 646, 878
CseI	GACGC	1 cut(s)	1117
Csp6I	GTAC	2 cut(s)	249, 794
CviAII	CATG	7 cut(s)	242, 313, 451, 512, 537, 556, 738
CviQI	GTAC	2 cut(s)	249, 794
DdeI	CTNAG	2 cut(s)	94, 1142
DpnI	GATC	5 cut(s)	174, 525, 686, 921, 1310
DpnII	GATC	5 cut(s)	172, 523, 684, 919, 1308
DraI	TTTAAA	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	1392
EarI	CTCTTC	1 cut(s)	1392
EciI	GGCGGA	1 cut(s)	612
Eco130I	CCWWGG	2 cut(s)	81, 351
Eco24I	GRGCYC	1 cut(s)	981
Eco47I	GGWCC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	1048
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	1135
EcoT14I	CCWWGG	2 cut(s)	81, 351
EcoT38I	GRGCYC	1 cut(s)	981
ErhI	CCWWGG	2 cut(s)	81, 351
FaeI	CATG	7 cut(s)	245, 316, 454, 515, 540, 559, 741
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FatI	CATG	7 cut(s)	241, 312, 450, 511, 536, 555, 737
FauNDI	CATATG	1 cut(s)	906
FblI	GTMKAC	2 cut(s)	562, 1275
Fnu4HI	GCNGC	2 cut(s)	87, 492
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	981
Fsp4HI	GCNGC	2 cut(s)	87, 492
FspBI	CTAG	2 cut(s)	1046, 1420
GluI	GCNGC	2 cut(s)	87, 492
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	4 cut(s)	591, 993, 1053, 1086
HaeIII	GGCC	4 cut(s)	332, 647, 880, 1147
HapII	CCGG	2 cut(s)	246, 252
HgaI	GACGC	1 cut(s)	1117
Hin1II	CATG	7 cut(s)	245, 316, 454, 515, 540, 559, 741
HincII	GTYRAC	2 cut(s)	154, 715
HindII	GTYRAC	2 cut(s)	154, 715
HindIII	AAGCTT	2 cut(s)	772, 1022
HinfI	GANTC	5 cut(s)	462, 573, 677, 1218, 1255
HpaI	GTTAAC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	246, 252
HphI	GGTGA	4 cut(s)	12, 327, 479, 1202
Hpy166II	GTNNAC	8 cut(s)	154, 563, 592, 715, 814, 1237, 1276, 1327
Hpy188I	TCNGA	5 cut(s)	528, 682, 924, 932, 1217
Hpy188III	TCNNGA	5 cut(s)	287, 803, 917, 1226, 1290
Hpy8I	GTNNAC	8 cut(s)	154, 563, 592, 715, 814, 1237, 1276, 1327
HpyAV	CCTTC	5 cut(s)	68, 117, 659, 1209, 1408
HpyCH4III	ACNGT	2 cut(s)	24, 712
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 228, 237, 353, 542, 998, 1076, 1399
HpyF3I	CTNAG	2 cut(s)	94, 1142
Hsp92II	CATG	7 cut(s)	245, 316, 454, 515, 540, 559, 741
KpnI	GGTACC	1 cut(s)	252
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	172, 523, 684, 919, 1308
LguI	GCTCTTC	1 cut(s)	1392
LmnI	GCTCC	5 cut(s)	103, 179, 499, 1034, 1105
Lsp1109I	GCAGC	2 cut(s)	98, 503
LweI	GCATC	5 cut(s)	356, 482, 624, 979, 1295
MaeI	CTAG	2 cut(s)	1046, 1420
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	5 cut(s)	174, 525, 686, 921, 1310
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	5 cut(s)	172, 523, 684, 919, 1308
MboII	GAAGA	6 cut(s)	791, 1303, 1352, 1361, 1364, 1409
MfeI	CAATTG	2 cut(s)	619, 1240
MflI	RGATCY	3 cut(s)	684, 919, 1308
MhlI	GDGCHC	2 cut(s)	981, 1404
MlyI	GAGTC	3 cut(s)	471, 582, 1249
MmeI	TCCRAC	2 cut(s)	439, 1195
MseI	TTAA	9 cut(s)	137, 153, 270, 423, 822, 968, 1020, 1317, 1409
MspA1I	CMGCKG	1 cut(s)	404
MspCI	CTTAAG	1 cut(s)	1408
MspI	CCGG	2 cut(s)	246, 252
MspR9I	CCNGG	1 cut(s)	1137
MunI	CAATTG	2 cut(s)	619, 1240
Mva1269I	GAATGC	2 cut(s)	308, 632
MvaI	CCWGG	1 cut(s)	1137
MwoI	GCNNNNNNNGC	8 cut(s)	95, 228, 237, 353, 542, 998, 1076, 1399
NdeI	CATATG	1 cut(s)	906
NdeII	GATC	5 cut(s)	172, 523, 684, 919, 1308
NlaIII	CATG	7 cut(s)	245, 316, 454, 515, 540, 559, 741
NlaIV	GGNNCC	3 cut(s)	250, 862, 879
NmuCI	GTSAC	1 cut(s)	706
NspI	RCATGY	2 cut(s)	454, 559
PaeI	GCATGC	1 cut(s)	454
PciI	ACATGT	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	1392
PctI	GAATGC	2 cut(s)	308, 632
PfeI	GAWTC	2 cut(s)	677, 1218
PflMI	CCANNNNNTGG	1 cut(s)	887
PkrI	GCNGC	2 cut(s)	88, 493
PleI	GAGTC	3 cut(s)	470, 581, 1249
PpsI	GAGTC	3 cut(s)	470, 581, 1249
PscI	ACATGT	1 cut(s)	555
PsiI	TTATAA	1 cut(s)	894
Psp6I	CCWGG	1 cut(s)	1135
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	1135
PspN4I	GGNNCC	3 cut(s)	250, 862, 879
PspPI	GGNCC	3 cut(s)	432, 646, 878
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	3 cut(s)	684, 919, 1308
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	2 cut(s)	250, 795
RsaNI	GTAC	2 cut(s)	249, 794
SapI	GCTCTTC	1 cut(s)	1392
SaqAI	TTAA	9 cut(s)	137, 153, 270, 423, 822, 968, 1020, 1317, 1409
SatI	GCNGC	2 cut(s)	87, 492
Sau3AI	GATC	5 cut(s)	172, 523, 684, 919, 1308
Sau96I	GGNCC	3 cut(s)	432, 646, 878
ScaI	AGTACT	1 cut(s)	795
SchI	GAGTC	3 cut(s)	471, 582, 1249
ScrFI	CCNGG	1 cut(s)	1137
SduI	GDGCHC	2 cut(s)	981, 1404
SfaNI	GCATC	5 cut(s)	356, 482, 624, 979, 1295
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	1408
SmoI	CTYRAG	1 cut(s)	1408
SphI	GCATGC	1 cut(s)	454
SsiI	CCGC	2 cut(s)	231, 597
SspI	AATATT	1 cut(s)	1056
SspMI	CTAG	2 cut(s)	1046, 1420
StyD4I	CCNGG	1 cut(s)	1135
StyI	CCWWGG	2 cut(s)	81, 351
TaaI	ACNGT	2 cut(s)	24, 712
TaqI	TCGA	1 cut(s)	175
TatI	WGTACW	1 cut(s)	793
TfiI	GAWTC	2 cut(s)	677, 1218
Tru1I	TTAA	9 cut(s)	137, 153, 270, 423, 822, 968, 1020, 1317, 1409
Tru9I	TTAA	9 cut(s)	137, 153, 270, 423, 822, 968, 1020, 1317, 1409
TscAI	CASTG	3 cut(s)	999, 1072, 1130
TseFI	GTSAC	1 cut(s)	706
TseI	GCWGC	2 cut(s)	86, 491
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	6 cut(s)	301, 408, 469, 490, 1291, 1362
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	3 cut(s)	999, 1072, 1130
Van91I	CCANNNNNTGG	1 cut(s)	887
Vha464I	CTTAAG	1 cut(s)	1408
VpaK11BI	GGWCC	1 cut(s)	432
XapI	RAATTY	4 cut(s)	29, 234, 255, 752
XceI	RCATGY	2 cut(s)	454, 559
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmiI	GTMKAC	2 cut(s)	562, 1275
XspI	CTAG	2 cut(s)	1046, 1420
ZrmI	AGTACT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.