RchiOBHm_Chr2g0109661

sphingolipid transporter spinster homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
21025262 .. 21031216
5955 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48347

Sequence Viewer

Length: 1581 bp
ATGATCATGGCACAACCACCACAATCACCGTCAAAATTCGCCCAATTCCCCAATCCTAATTCCCTTCCACCGATGACAAAGAACCCCAAGGCGGCAATCTCAGCTCCAAAGCCTTCCTGGTTCTCCCCCGAAAGGTTGCTGTTAATCCTGTGTCTGGTTAACTTGATAAATTATATTGATCGAGGAGCAATAGCCAGCAATGGGGTCAATGGGAGTATTGGGATTTGCGATGAGAGCGGAATTTGCCATCCCAGTACCGGAATTCAGGGGGATTTTAAATTGAACAACTTTCAAGATGGTGTTCTATCATCTGCATTCATGGTTGGGCTTCTCGTGGCCTCACCCATCTTTGCATCCTTGGCAAAGAGCCACAATCCTTTTAGGCTGATTGGAGTTGGGTTATCTATTTGGACATTTGCCACAGCTGGGTGTGGTAGTTCATTTAATTTCTGGTCCATTGCAATATGTCGCATGCTGGTTGGAGTCGGTGAGGCATCTTTCATAAGTCTTGCAGCTCCGTTCATTGATGACCATGCCCCTGCAGATCAGAAATCAGCATGGCTGGCAATGTTTTACATGTGTATACCAACTGGAGTCGCAATAGGCTATGTTTACGGCGGATTTGTGGGAGAGAGCATCAATTGGCGTTGTGCATTCTGGGGAGAGGCCCTTCTAATGCTTCCCTTTGCTGTCTTGGGTTTTGCGGTGAAACCATTGCAGCTGAAAGGTTTACCTCCTACTGAATCGACAGAGCTTTTGGAATCTATTGAAACTAGTCCTTTAATAGAAGAATCAGAGATCCCAAATATAAATGGTCATGTGACAGTTGACTGCAATGAGACTTCTTGCTCATGCCCTACAACCAAATTTTTGGACCAAGTTTCAAGCTTCTCAAAGGATTTGAAAGTACTTCTGCTTGATAAAGTTTACATTGTTAATGTATTAGGTTATGTATCATACAACTTTGTCATTGGAACCTACTCATACTGGGGGCCAAAGGCTGGTTATAACATTTACCATATGAGTAATCCAGATCTGATGTTCGGAGGTATTACTATTCTCTGTGGAATTCTAGGAACTTTAACTGGAGGGCTCGTCCTTGATGCAGTGGGTGCTACAATTCACAATGCTTTTAAGCTTCTTGCTGGAGCGACAATGCTAGGTGCAATATTTTGCTTCAGTGCGTTTTGTGCAAAGAGCCTGCACATCTTTGTAGTTTTTTTCTCACTGGGGGAGCTACTTCTGTTTTCAACACAGGCTCCAGTAAATTATGTGTCTCTGCACTGCGTCAAACCAGGGCTAAGGCCATTGTCTATGGCTATCTCAACTCTTTCAATCCACATATTTGGTGATGTTCCTTCCTCGCCTCTTGTCGGAATCGTTCAGGATTATGTTCACAATTGGAGGGAAACGACTCTAATCTTTACCTCTGTCTACTTTGCTGCATCAGGAATATGGTTCATAGGGATCTTCCTTAATAGTGTGGACAAGTTTGAGGAAGATGATGAAGAAGAAGTCTCTACATTAGTTCAAGCCAACAAAGAACCATTGCTTGAAGAGCACCACTTAAGGAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

526

Amino Acids

57.03

Weight (kDa)

5.29

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 87 - 445 5.6e-32 Major Facilitator Superfamily
OATP PF03137 151 - 397 2.8e-17 Organic Anion Transporter Polypeptide (OATP) family
OATP PF03137 397 - 463 2.2e-07 Organic Anion Transporter Polypeptide (OATP) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1008
AccB7I CCANNNNNTGG 1 cut(s) 1001
AccBSI CCGCTC 1 cut(s) 237
AccI GTMKAC 2 cut(s) 583, 1434
AciI CCGC 4 cut(s) 92, 237, 618, 704
AclWI GGATC 2 cut(s) 793, 1475
AcsI RAATTY 5 cut(s) 35, 240, 261, 866, 1068
AcuI CTGAAG 1 cut(s) 1162
AfaI GTAC 2 cut(s) 256, 909
AfiI CCNNNNNNNGG 8 cut(s) 91, 132, 154, 201, 257, 426, 1001, 1373
AflII CTTAAG 1 cut(s) 1567
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 9 cut(s) 283, 293, 770, 885, 904, 1251, 1335, 1532, 1556
AhlI ACTAGT 1 cut(s) 773
AjnI CCWGG 2 cut(s) 116, 1294
AluBI AGCT 8 cut(s) 104, 425, 515, 721, 754, 888, 1138, 1237
AluI AGCT 8 cut(s) 104, 425, 515, 721, 754, 888, 1138, 1237
Alw21I GWGCWC 1 cut(s) 1563
Alw26I GTCTC 3 cut(s) 833, 1281, 1522
AlwI GGATC 2 cut(s) 793, 1475
AoxI GGCC 4 cut(s) 336, 666, 992, 1304
ApeKI GCWGC 3 cut(s) 512, 718, 1442
ApoI RAATTY 5 cut(s) 35, 240, 261, 866, 1068
ArsI GACNNNNNNTTYG 2 cut(s) 739, 771
AspS9I GGNCC 4 cut(s) 453, 667, 874, 992
AsuHPI GGTGA 5 cut(s) 18, 333, 500, 718, 1361
AvaII GGWCC 2 cut(s) 453, 874
BanII GRGCYC 1 cut(s) 1095
BauI CACGAG 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 1563
BbvI GCAGC 3 cut(s) 524, 730, 1429
BccI CCATC 3 cut(s) 255, 290, 353
BceAI ACGGC 1 cut(s) 631
BciT130I CCWGG 2 cut(s) 118, 1296
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 833, 1281, 1522
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 4 cut(s) 774, 1073, 1160, 1579
BfmI CTRYAG 1 cut(s) 540
BfrI CTTAAG 1 cut(s) 1567
BglII AGATCT 1 cut(s) 1033
BisI GCNGC 4 cut(s) 93, 513, 719, 1443
BlsI GCNGC 4 cut(s) 94, 514, 720, 1444
BmcAI AGTACT 1 cut(s) 909
Bme1390I CCNGG 2 cut(s) 118, 1296
Bme18I GGWCC 2 cut(s) 453, 874
BmgT120I GGNCC 4 cut(s) 453, 667, 874, 992
BmiI GGNNCC 3 cut(s) 976, 993, 1260
BmrFI CCNGG 2 cut(s) 118, 1296
BmrI ACTGGG 3 cut(s) 246, 997, 1238
BmsI GCATC 5 cut(s) 362, 503, 645, 1093, 1454
BmuI ACTGGG 3 cut(s) 246, 997, 1238
BpmI CTGGAG 4 cut(s) 612, 1107, 1167, 1245
Bpu10I CCTNAGC 1 cut(s) 1301
BsaJI CCNNGG 3 cut(s) 87, 357, 1295
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 4 cut(s) 1080, 1110, 1243, 1273
Bsc4I CCNNNNNNNGG 8 cut(s) 91, 132, 154, 201, 257, 426, 1001, 1373
Bse1I ACTGG 6 cut(s) 252, 595, 992, 1090, 1233, 1262
Bse3DI GCAATG 6 cut(s) 205, 456, 573, 713, 841, 1547
BseBI CCWGG 2 cut(s) 118, 1296
BseDI CCNNGG 3 cut(s) 87, 357, 1295
BseGI GGATG 2 cut(s) 247, 353
BseLI CCNNNNNNNGG 8 cut(s) 91, 132, 154, 201, 257, 426, 1001, 1373
BseMI GCAATG 6 cut(s) 205, 456, 573, 713, 841, 1547
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 6 cut(s) 252, 595, 992, 1090, 1233, 1262
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 3 cut(s) 524, 730, 1429
BseYI CCCAGC 1 cut(s) 425
BsgI GTGCAG 2 cut(s) 1187, 1265
BshFI GGCC 4 cut(s) 338, 668, 994, 1306
BsiHKAI GWGCWC 1 cut(s) 1563
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 8 cut(s) 91, 132, 154, 201, 257, 426, 1001, 1373
BsmAI GTCTC 3 cut(s) 833, 1281, 1522
BsmI GAATGC 2 cut(s) 314, 653
BsnI GGCC 4 cut(s) 338, 668, 994, 1306
Bsp1286I GDGCHC 2 cut(s) 1095, 1563
Bsp143I GATC 6 cut(s) 3, 178, 544, 798, 1033, 1467
BspACI CCGC 4 cut(s) 92, 237, 618, 704
BspANI GGCC 4 cut(s) 338, 668, 994, 1306
BspCNI CTCAG 1 cut(s) 113
BspLI GGNNCC 3 cut(s) 976, 993, 1260
BspMAI CTGCAG 1 cut(s) 544
BspPI GGATC 2 cut(s) 793, 1475
BspQI GCTCTTC 1 cut(s) 1551
BspTI CTTAAG 1 cut(s) 1567
BsrBI CCGCTC 1 cut(s) 237
BsrDI GCAATG 6 cut(s) 205, 456, 573, 713, 841, 1547
BsrI ACTGG 6 cut(s) 252, 595, 992, 1090, 1233, 1262
BssECI CCNNGG 3 cut(s) 87, 357, 1295
BssMI GATC 6 cut(s) 3, 178, 544, 798, 1033, 1467
BssNAI GTATAC 1 cut(s) 584
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 87, 357
Bst1107I GTATAC 1 cut(s) 584
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 118, 1296
Bst4CI ACNGT 2 cut(s) 30, 826
Bst6I CTCTTC 1 cut(s) 1551
BstAFI CTTAAG 1 cut(s) 1567
BstAPI GCANNNNNTGC 1 cut(s) 1112
BstC8I GCNNGC 4 cut(s) 196, 473, 564, 1202
BstDEI CTNAG 2 cut(s) 100, 1301
BstF5I GGATG 2 cut(s) 247, 353
BstKTI GATC 6 cut(s) 6, 181, 547, 801, 1036, 1470
BstMAI GTCTC 3 cut(s) 833, 1281, 1522
BstMBI GATC 6 cut(s) 3, 178, 544, 798, 1033, 1467
BstMWI GCNNNNNNNGC 8 cut(s) 101, 234, 243, 359, 563, 1112, 1190, 1558
BstNI CCWGG 2 cut(s) 118, 1296
BstNSI RCATGY 2 cut(s) 475, 580
BstSCI CCNGG 2 cut(s) 116, 1294
BstSFI CTRYAG 1 cut(s) 540
BstV1I GCAGC 3 cut(s) 524, 730, 1429
BstX2I RGATCY 3 cut(s) 798, 1033, 1467
BstXI CCANNNNNNTGG 2 cut(s) 871, 1346
BstYI RGATCY 3 cut(s) 798, 1033, 1467
BstZ17I GTATAC 1 cut(s) 584
BsuRI GGCC 4 cut(s) 338, 668, 994, 1306
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 247, 353
BtsI GCAGTG 2 cut(s) 1113, 1282
BtsIMutI CAGTG 4 cut(s) 1113, 1186, 1226, 1282
Cac8I GCNNGC 4 cut(s) 196, 473, 564, 1202
Cfr13I GGNCC 4 cut(s) 453, 667, 874, 992
CseI GACGC 1 cut(s) 1276
Csp6I GTAC 2 cut(s) 255, 908
CviAII CATG 8 cut(s) 7, 319, 472, 533, 558, 577, 818, 852
CviQI GTAC 2 cut(s) 255, 908
DdeI CTNAG 2 cut(s) 100, 1301
DpnI GATC 6 cut(s) 5, 180, 546, 800, 1035, 1469
DpnII GATC 6 cut(s) 3, 178, 544, 798, 1033, 1467
DraI TTTAAA 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 1551
EarI CTCTTC 1 cut(s) 1551
EciI GGCGGA 1 cut(s) 633
Eco130I CCWWGG 2 cut(s) 87, 357
Eco24I GRGCYC 1 cut(s) 1095
Eco47I GGWCC 2 cut(s) 453, 874
Eco57I CTGAAG 1 cut(s) 1162
EcoO109I RGGNCCY 1 cut(s) 667
EcoRI GAATTC 2 cut(s) 261, 1068
EcoRII CCWGG 2 cut(s) 116, 1294
EcoT14I CCWWGG 2 cut(s) 87, 357
EcoT38I GRGCYC 1 cut(s) 1095
ErhI CCWWGG 2 cut(s) 87, 357
FaeI CATG 8 cut(s) 10, 322, 475, 536, 561, 580, 821, 855
FatI CATG 8 cut(s) 6, 318, 471, 532, 557, 576, 817, 851
FauNDI CATATG 1 cut(s) 1020
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 2 cut(s) 583, 1434
Fnu4HI GCNGC 4 cut(s) 93, 513, 719, 1443
FokI GGATG 2 cut(s) 234, 340
FriOI GRGCYC 1 cut(s) 1095
Fsp4HI GCNGC 4 cut(s) 93, 513, 719, 1443
FspBI CTAG 4 cut(s) 774, 1073, 1160, 1579
GluI GCNGC 4 cut(s) 93, 513, 719, 1443
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 4 cut(s) 612, 1107, 1167, 1245
HaeIII GGCC 4 cut(s) 338, 668, 994, 1306
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 1276
Hin1II CATG 8 cut(s) 10, 322, 475, 536, 561, 580, 821, 855
HincII GTYRAC 2 cut(s) 160, 829
HindII GTYRAC 2 cut(s) 160, 829
HindIII AAGCTT 2 cut(s) 886, 1136
HinfI GANTC 7 cut(s) 483, 594, 743, 761, 791, 1377, 1414
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 258
HphI GGTGA 5 cut(s) 18, 333, 500, 718, 1361
Hpy166II GTNNAC 9 cut(s) 160, 584, 613, 731, 829, 928, 1396, 1435, 1486
Hpy188I TCNGA 5 cut(s) 549, 796, 1038, 1046, 1376
Hpy188III TCNNGA 4 cut(s) 293, 1031, 1385, 1449
Hpy8I GTNNAC 9 cut(s) 160, 584, 613, 731, 829, 928, 1396, 1435, 1486
HpyAV CCTTC 5 cut(s) 74, 123, 680, 1368, 1567
HpyCH4III ACNGT 2 cut(s) 30, 826
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 234, 243, 359, 563, 1112, 1190, 1558
HpyF3I CTNAG 2 cut(s) 100, 1301
Hsp92II CATG 8 cut(s) 10, 322, 475, 536, 561, 580, 821, 855
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 6 cut(s) 3, 178, 544, 798, 1033, 1467
LguI GCTCTTC 1 cut(s) 1551
LmnI GCTCC 6 cut(s) 109, 185, 520, 1148, 1234, 1264
Lsp1109I GCAGC 3 cut(s) 524, 730, 1429
LweI GCATC 5 cut(s) 362, 503, 645, 1093, 1454
MaeI CTAG 4 cut(s) 774, 1073, 1160, 1579
MaeIII GTNAC 1 cut(s) 820
MalI GATC 6 cut(s) 5, 180, 546, 800, 1035, 1469
MbiI CCGCTC 1 cut(s) 237
MboI GATC 6 cut(s) 3, 178, 544, 798, 1033, 1467
MboII GAAGA 6 cut(s) 800, 1462, 1511, 1520, 1523, 1568
MfeI CAATTG 2 cut(s) 640, 1399
MflI RGATCY 3 cut(s) 798, 1033, 1467
MhlI GDGCHC 2 cut(s) 1095, 1563
MlyI GAGTC 3 cut(s) 492, 603, 1408
MmeI TCCRAC 2 cut(s) 460, 1354
MspA1I CMGCKG 2 cut(s) 425, 721
MspCI CTTAAG 1 cut(s) 1567
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 118, 1296
MunI CAATTG 2 cut(s) 640, 1399
Mva1269I GAATGC 2 cut(s) 314, 653
MvaI CCWGG 2 cut(s) 118, 1296
MwoI GCNNNNNNNGC 8 cut(s) 101, 234, 243, 359, 563, 1112, 1190, 1558
NdeI CATATG 1 cut(s) 1020
NdeII GATC 6 cut(s) 3, 178, 544, 798, 1033, 1467
NlaIII CATG 8 cut(s) 10, 322, 475, 536, 561, 580, 821, 855
NlaIV GGNNCC 3 cut(s) 976, 993, 1260
NmuCI GTSAC 1 cut(s) 820
NspI RCATGY 2 cut(s) 475, 580
PaeI GCATGC 1 cut(s) 475
PciI ACATGT 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 1551
PctI GAATGC 2 cut(s) 314, 653
PfeI GAWTC 4 cut(s) 743, 761, 791, 1377
PflMI CCANNNNNTGG 1 cut(s) 1001
PkrI GCNGC 4 cut(s) 94, 514, 720, 1444
PleI GAGTC 3 cut(s) 491, 602, 1408
PpsI GAGTC 3 cut(s) 491, 602, 1408
PscI ACATGT 1 cut(s) 576
PsiI TTATAA 1 cut(s) 1008
Psp6I CCWGG 2 cut(s) 116, 1294
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 2 cut(s) 116, 1294
PspN4I GGNNCC 3 cut(s) 976, 993, 1260
PspPI GGNCC 4 cut(s) 453, 667, 874, 992
PstI CTGCAG 1 cut(s) 544
PsuI RGATCY 3 cut(s) 798, 1033, 1467
PvuII CAGCTG 2 cut(s) 425, 721
RsaI GTAC 2 cut(s) 256, 909
RsaNI GTAC 2 cut(s) 255, 908
SapI GCTCTTC 1 cut(s) 1551
SatI GCNGC 4 cut(s) 93, 513, 719, 1443
Sau3AI GATC 6 cut(s) 3, 178, 544, 798, 1033, 1467
Sau96I GGNCC 4 cut(s) 453, 667, 874, 992
ScaI AGTACT 1 cut(s) 909
SchI GAGTC 3 cut(s) 492, 603, 1408
ScrFI CCNGG 2 cut(s) 118, 1296
SduI GDGCHC 2 cut(s) 1095, 1563
SfaNI GCATC 5 cut(s) 362, 503, 645, 1093, 1454
SfcI CTRYAG 1 cut(s) 540
SinI GGWCC 2 cut(s) 453, 874
SmlI CTYRAG 1 cut(s) 1567
SmoI CTYRAG 1 cut(s) 1567
SpeI ACTAGT 1 cut(s) 773
SphI GCATGC 1 cut(s) 475
SsiI CCGC 4 cut(s) 92, 237, 618, 704
SspI AATATT 1 cut(s) 1170
SspMI CTAG 4 cut(s) 774, 1073, 1160, 1579
StyD4I CCNGG 2 cut(s) 116, 1294
StyI CCWWGG 2 cut(s) 87, 357
TaaI ACNGT 2 cut(s) 30, 826
TaqI TCGA 2 cut(s) 181, 746
TatI WGTACW 1 cut(s) 907
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 4 cut(s) 743, 761, 791, 1377
TscAI CASTG 4 cut(s) 1113, 1186, 1233, 1289
TseFI GTSAC 1 cut(s) 820
TseI GCWGC 3 cut(s) 512, 718, 1442
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 6 cut(s) 307, 429, 490, 511, 1450, 1521
TspGWI ACGGA 1 cut(s) 507
TspRI CASTG 4 cut(s) 1113, 1186, 1233, 1289
Van91I CCANNNNNTGG 1 cut(s) 1001
Vha464I CTTAAG 1 cut(s) 1567
VpaK11BI GGWCC 2 cut(s) 453, 874
XapI RAATTY 5 cut(s) 35, 240, 261, 866, 1068
XceI RCATGY 2 cut(s) 475, 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 114
XmiI GTMKAC 2 cut(s) 583, 1434
XspI CTAG 4 cut(s) 774, 1073, 1160, 1579
ZrmI AGTACT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.