Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Forward (+)

16894986 .. 16926112

Gene Structure 31127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAAAGCCTAAGGCATATGCCACCCCCACCTCTACCCAGGCCGCCACAAATTAAGTCACCGGTAACCGACGCAAACACGGCACTACTTATACAGATGAGAGCAATAGCCAGCAATGGGAGCATAGGGATTTATTACATTCATGATATATTGGCTGTATTTTGGCTTACGATGGTATGTTTCTTACATGGGGATTTTAAATTGAACAACTTTCAAGATGGTGTTCTATCATCTGTGTTTTTGGTTGGGCTTCTCGTGGTCTCACCCATCTTTGCATTCTTGGCAAAGAGCCACAATCCTTTTAGGCTGATTGGAGTTGGGTTATCTATTTGGACATTTGCCACAGCTAGGTGTGGTAGTTCATTTAATTTCTGGTCCATTGCAATATGTCGCATGCTGGTTGGAGTCGGTGAGGCATCTTTCATAATTCTTGCAGCTCCTTTCATTGATGACCATGCCCCTGCAGATCAGAAATCAGCATGGCTGGCAATATTTTACATGCGTATACCGATTGGAGTTGCTATAGGCTCTGTTTCCGGCGGATTT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

182

Amino Acids

19.82

Weight (kDa)

8.56

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	52 - 182	4.9e-14	Major Facilitator Superfamily
MFS_4	PF06779	67 - 178	2.6e-06	Uncharacterised MFS-type transporter YbfB
OATP	PF03137	124 - 182	4.3e-07	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	505
AciI	CCGC	2 cut(s)	44, 540
AfiI	CCNNNNNNNGG	2 cut(s)	117, 348
AgeI	ACCGGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	205, 215
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	347, 437
AluI	AGCT	2 cut(s)	347, 437
Alw26I	GTCTC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	434
AsiGI	ACCGGT	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	3 cut(s)	51, 255, 422
AvaII	GGWCC	1 cut(s)	375
AxyI	CCTNAGG	1 cut(s)	11
BauI	CACGAG	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	3 cut(s)	166, 212, 275
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	2 cut(s)	462, 522
BisI	GCNGC	2 cut(s)	44, 435
BlsI	GCNGC	2 cut(s)	45, 436
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 348
Bse118I	RCCGGY	1 cut(s)	61
Bse21I	CCTNAGG	1 cut(s)	11
Bse3DI	GCAATG	2 cut(s)	121, 378
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	117, 348
BseMI	GCAATG	2 cut(s)	121, 378
BseXI	GCAGC	1 cut(s)	446
BshFI	GGCC	1 cut(s)	43
BshTI	ACCGGT	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	62, 537
BslI	CCNNNNNNNGG	2 cut(s)	117, 348
BsmAI	GTCTC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	43
Bso31I	GGTCTC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	2 cut(s)	44, 540
BspANI	GGCC	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	2 cut(s)	121, 378
BsrFI	RCCGGY	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	466
BssNAI	GTATAC	1 cut(s)	506
BssSI	CACGAG	1 cut(s)	254
Bst1107I	GTATAC	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	40
BstC8I	GCNNGC	3 cut(s)	112, 395, 486
BstDEI	CTNAG	1 cut(s)	11
BstEII	GGTNACC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 120, 281, 485
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	2 cut(s)	397, 502
BstPI	GGTNACC	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	2 cut(s)	462, 522
BstV1I	GCAGC	1 cut(s)	446
BstZ17I	GTATAC	1 cut(s)	506
Bsu36I	CCTNAGG	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	112, 395, 486
CciI	TCATGA	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	375
CseI	GACGC	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	61
CviAII	CATG	6 cut(s)	143, 188, 394, 455, 480, 499
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DraI	TTTAAA	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	375
Eco81I	CCTNAGG	1 cut(s)	11
Eco91I	GGTNACC	1 cut(s)	64
EcoO65I	GGTNACC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	38
FaeI	CATG	6 cut(s)	146, 191, 397, 458, 483, 502
FatI	CATG	6 cut(s)	142, 187, 393, 454, 479, 498
FauNDI	CATATG	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	44, 435
Fsp4HI	GCNGC	2 cut(s)	44, 435
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	2 cut(s)	44, 435
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	2 cut(s)	62, 537
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	6 cut(s)	146, 191, 397, 458, 483, 502
HinfI	GANTC	1 cut(s)	405
HpaII	CCGG	2 cut(s)	62, 537
HphI	GGTGA	3 cut(s)	51, 255, 422
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	1 cut(s)	471
Hpy188III	TCNNGA	2 cut(s)	143, 215
Hpy8I	GTNNAC	1 cut(s)	506
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4V	TGCA	4 cut(s)	275, 383, 434, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 120, 281, 485
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	6 cut(s)	146, 191, 397, 458, 483, 502
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	2 cut(s)	120, 442
LpnPI	CCDG	8 cut(s)	25, 52, 75, 124, 358, 383, 470, 474
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	57, 64
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MluCI	AATT	4 cut(s)	51, 200, 367, 426
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	2 cut(s)	42, 406
MseI	TTAA	3 cut(s)	54, 198, 366
MspI	CCGG	2 cut(s)	62, 537
MspR9I	CCNGG	1 cut(s)	40
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	4 cut(s)	80, 120, 281, 485
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	6 cut(s)	146, 191, 397, 458, 483, 502
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	2 cut(s)	397, 502
PaeI	GCATGC	1 cut(s)	397
PagI	TCATGA	1 cut(s)	142
PctI	GAATGC	1 cut(s)	275
PinAI	ACCGGT	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	45, 436
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	375
PstI	CTGCAG	1 cut(s)	466
SaqAI	TTAA	3 cut(s)	54, 198, 366
SatI	GCNGC	2 cut(s)	44, 435
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	1 cut(s)	375
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	4 cut(s)	34, 349, 353, 439
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	2 cut(s)	462, 522
SinI	GGWCC	1 cut(s)	375
SphI	GCATGC	1 cut(s)	397
Sse9I	AATT	4 cut(s)	51, 200, 367, 426
SsiI	CCGC	2 cut(s)	44, 540
SspI	AATATT	1 cut(s)	492
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	38
TasI	AATT	4 cut(s)	51, 200, 367, 426
TauI	GCSGC	1 cut(s)	46
Tru1I	TTAA	3 cut(s)	54, 198, 366
Tru9I	TTAA	3 cut(s)	54, 198, 366
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	4 cut(s)	131, 351, 412, 433
VpaK11BI	GGWCC	1 cut(s)	375
XceI	RCATGY	2 cut(s)	397, 502
XmiI	GTMKAC	1 cut(s)	505
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.