Rh2BG338500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001699
Physical Location & Seq
Reverse (-)
44865194 .. 44866701
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG338500.1

Sequence Viewer

Length: 555 bp
ATGGAGAAGGATCGTGGCGGCGGTGTTGCGGTCCTGGTTATTTGGGCTGGCGAAAGCCATTGCGGCAGGGAAAGGATGGAATGTTTCATCCATAATGGTGACCAGATCTCCTCGTCGGGGTCGCCTCCTACAAGGATTGGGATCGATGTTTTGACGTCTATGTGGCTGCAATTGTATTTCCCCGAGGGTGCTGAGGGCGCATCGCTTTGGTATGCCAGCGAAGCCGTCGCGTTAACTAGGCGGCAGAGATCGGATTTTGTTGATGAAGATGCACTGCTCGTTTGCGGCAGAGCAAATAGAACCATTGGACTACCGTTGGGCGAGATGTACAACGAGGCTGCGATGGTCCTTCACGACCCAGAAGACACCGACAGTCCGGCGACGGAGGATCCGGGGTGCCCAGCATTGGATAGTCGCTTTGGACGCCCATCTTGGGCTTTATGTCTCCACCCAATTAAAGAAGCCCAACAAAGAGGACAGCTTGCCACACGACAATCCTTCATCCTCATTCCAGCATATCTGAGAAGGTCGAGAGAGATTTGGCATGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.48

Weight (kDa)

5.21

Isoelectric Point (pI)

63.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 396
AccII CGCG 1 cut(s) 230
AciI CCGC 6 cut(s) 18, 21, 29, 63, 241, 285
AclWI GGATC 4 cut(s) 18, 149, 383, 396
AcyI GRCGYC 2 cut(s) 155, 424
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 3 cut(s) 117, 406, 433
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 481
AluI AGCT 1 cut(s) 481
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 4 cut(s) 18, 149, 383, 396
Ama87I CYCGRG 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 166, 338
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 31, 346
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 182
AvaII GGWCC 2 cut(s) 31, 346
BaeGI GKGCMC 1 cut(s) 401
BamHI GGATCC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 369
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 153, 325
BccI CCATC 3 cut(s) 70, 337, 436
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 35
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 63
BglII AGATCT 1 cut(s) 105
BisI GCNGC 6 cut(s) 19, 64, 167, 242, 286, 339
BlsI GCNGC 6 cut(s) 20, 65, 168, 243, 287, 340
Bme1390I CCNGG 2 cut(s) 35, 393
Bme18I GGWCC 2 cut(s) 31, 346
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 31, 346
BmiI GGNNCC 2 cut(s) 390, 398
BmrFI CCNGG 2 cut(s) 35, 393
BmsI GCATC 2 cut(s) 209, 259
BpiI GAAGAC 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 393
Bsa29I ATCGAT 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 140
BsaHI GRCGYC 2 cut(s) 155, 424
BsaJI CCNNGG 2 cut(s) 183, 392
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 406, 433
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 183, 392
BseGI GGATG 3 cut(s) 81, 87, 501
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 3 cut(s) 117, 406, 433
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 183, 512
BseRI GAGGAG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 401
BseXI GCAGC 2 cut(s) 153, 325
BseYI CCCAGC 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 396
BshVI ATCGAT 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 2 cut(s) 377, 392
BslI CCNNNNNNNGG 3 cut(s) 117, 406, 433
BsmAI GTCTC 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 401
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 6 cut(s) 10, 105, 141, 248, 388, 547
BspACI CCGC 6 cut(s) 18, 21, 29, 63, 241, 285
BspCNI CTCAG 2 cut(s) 184, 513
BspDI ATCGAT 1 cut(s) 144
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 2 cut(s) 390, 398
BspPI GGATC 4 cut(s) 18, 149, 383, 396
BspT107I GGYRCC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 183, 392
BssMI GATC 6 cut(s) 10, 105, 141, 248, 388, 547
BssNI GRCGYC 2 cut(s) 155, 424
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 315, 374
BstACI GRCGYC 2 cut(s) 155, 424
BstAUI TGTACA 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 49, 217, 483
BstDEI CTNAG 2 cut(s) 192, 521
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 3 cut(s) 81, 87, 501
BstFNI CGCG 1 cut(s) 230
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 6 cut(s) 13, 108, 144, 251, 391, 550
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 6 cut(s) 10, 105, 141, 248, 388, 547
BstMWI GCNNNNNNNGC 4 cut(s) 63, 197, 221, 423
BstNI CCWGG 1 cut(s) 35
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 33, 391
BstSLI GKGCMC 1 cut(s) 401
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 153, 325
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 2 cut(s) 105, 388
BstYI RGATCY 2 cut(s) 105, 388
Bsu15I ATCGAT 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 144
BtgZI GCGATG 2 cut(s) 186, 356
BtsCI GGATG 3 cut(s) 81, 87, 501
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 3 cut(s) 49, 217, 483
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 31, 346
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 432
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 545
CviJI RGCY 8 cut(s) 47, 57, 166, 224, 338, 437, 464, 481
CviKI_1 RGCY 8 cut(s) 47, 57, 166, 224, 338, 437, 464, 481
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 192, 521
DpnI GATC 6 cut(s) 12, 107, 143, 250, 390, 549
DpnII GATC 6 cut(s) 10, 105, 141, 248, 388, 547
Eco47I GGWCC 2 cut(s) 31, 346
Eco88I CYCGRG 1 cut(s) 182
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 548
FaiI YATR 6 cut(s) 93, 161, 213, 442, 517, 546
FatI CATG 1 cut(s) 544
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 6 cut(s) 19, 64, 167, 242, 286, 339
FokI GGATG 3 cut(s) 74, 88, 488
Fsp4HI GCNGC 6 cut(s) 19, 64, 167, 242, 286, 339
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 199
GluI GCNGC 6 cut(s) 19, 64, 167, 242, 286, 339
GsaI CCCAGC 1 cut(s) 404
HapII CCGG 2 cut(s) 377, 392
HgaI GACGC 1 cut(s) 432
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 2 cut(s) 155, 424
Hin1II CATG 1 cut(s) 548
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HpaI GTTAAC 1 cut(s) 234
HpaII CCGG 2 cut(s) 377, 392
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 253, 522
Hpy188III TCNNGA 2 cut(s) 353, 531
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 3 cut(s) 118, 230, 385
HpyAV CCTTC 3 cut(s) 359, 508, 519
HpyCH4III ACNGT 2 cut(s) 315, 374
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 169, 272
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 197, 221, 423
HpyF3I CTNAG 2 cut(s) 192, 521
HpySE526I ACGT 1 cut(s) 155
Hsp92I GRCGYC 2 cut(s) 155, 424
Hsp92II CATG 1 cut(s) 548
HspAI GCGC 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 547
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 6 cut(s) 10, 105, 141, 248, 388, 547
Lsp1109I GCAGC 2 cut(s) 153, 325
LweI GCATC 2 cut(s) 209, 259
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 98
MalI GATC 6 cut(s) 12, 107, 143, 250, 390, 549
MboI GATC 6 cut(s) 10, 105, 141, 248, 388, 547
MboII GAAGA 2 cut(s) 278, 374
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 2 cut(s) 105, 388
MhlI GDGCHC 1 cut(s) 401
MluCI AATT 2 cut(s) 170, 453
MnlI CCTC 8 cut(s) 121, 135, 178, 187, 328, 379, 467, 515
MseI TTAA 2 cut(s) 233, 456
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 2 cut(s) 377, 392
MspR9I CCNGG 2 cut(s) 35, 393
MunI CAATTG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 4 cut(s) 63, 197, 221, 423
NciI CCSGG 1 cut(s) 393
NdeII GATC 6 cut(s) 10, 105, 141, 248, 388, 547
NlaIII CATG 1 cut(s) 548
NlaIV GGNNCC 2 cut(s) 390, 398
NmuCI GTSAC 1 cut(s) 98
PkrI GCNGC 6 cut(s) 20, 65, 168, 243, 287, 340
Psp6I CCWGG 1 cut(s) 33
PspEI GGTNACC 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 390, 398
PspPI GGNCC 2 cut(s) 31, 346
PsuI RGATCY 2 cut(s) 105, 388
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 233, 456
SatI GCNGC 6 cut(s) 19, 64, 167, 242, 286, 339
Sau3AI GATC 6 cut(s) 10, 105, 141, 248, 388, 547
Sau96I GGNCC 2 cut(s) 31, 346
ScrFI CCNGG 2 cut(s) 35, 393
SduI GDGCHC 1 cut(s) 401
SetI ASST 3 cut(s) 158, 483, 530
SfaNI GCATC 2 cut(s) 209, 259
SinI GGWCC 2 cut(s) 31, 346
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 2 cut(s) 170, 453
SsiI CCGC 6 cut(s) 18, 21, 29, 63, 241, 285
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 33, 391
TaaI ACNGT 2 cut(s) 315, 374
TaiI ACGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 144, 530
TasI AATT 2 cut(s) 170, 453
TatI WGTACW 1 cut(s) 327
TauI GCSGC 4 cut(s) 21, 66, 244, 288
Tru1I TTAA 2 cut(s) 233, 456
Tru9I TTAA 2 cut(s) 233, 456
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 2 cut(s) 166, 338
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 3 cut(s) 76, 279, 490
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 279
VpaK11BI GGWCC 2 cut(s) 31, 346
XspI CTAG 1 cut(s) 237
ZraI GACGTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.