Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Reverse (-)

20587620 .. 20588909

Gene Structure 1290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0117300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGTTTCTTTCAACTTGGATCATCACCGCAATCCAGAGGTTCTGATACAAGATTTTAATTCATCTGTGAGGATATTGACACTAAACAGGCCTCGACACTTTAATGCTTTGTCCGGCAAAATGCTCTCTCAGCTGCTTAGACTGTTCCTTGCCCATGACCATGATGTCAAAGTAAAAGTGGTCATTCTCAAAGCTTTGGGAGCGGTTCCTGAAACAGGTGCCTCTTATTTCCTGTCCAGACTTCCTGGATTCCTTGGAGAATATCTTGCCCTTACTGGTGCCCGATTGGACGGTCCTGAAATGCTTGCTTGCGGTCTAGCAACTCATTTTGTTCCCGCAACCAAGTTGGCTTTGCTAGAACAAGAGTTAATTGCTTCCATAGGTGCTTTAACCAATGAAAGAACCTCAAGCTGTGATCTTGTATTTTATGTTTCATCCATTATACATAAGTACTCAATCCAACCAGCTTTGAAAGAGAGAGGCAATGCTTGGCACAATATGGATGTTATTGAAAAGTGCTTTTCAAAGAGAACAGTAGAAGAAGTTGTGAGTGCACTAGAGAAGGAGGCTACATATACTGATGGTCATGTAAATGGTGCTAATCCATGGTTAACATCCACAATTCAATCACTTAAGAAGGCGTCGCCCATAAGTTTGAAGATTTCTTTGAGATCTATTAGAGAAGGAAGGTCGCAAGGACTTGGTGAGTGTTTGGTTCGAGAATATAGAATGGTGTATCGTATTGCAACGGGGGAAATCAGCACAGATTTCAGAGAGGGTTGCACAGCTCTACTGGACGACAAGGATAGGATCCAAAAGTGGGAGCCTTGTAAATTGGAACTCGTCTCTGACCAGATGGTTGATCGGTACTTCTCGAAGTTGGATGAAGTTGAAGAACTTGAAGAACTAGAGCTCCCTGCAAGATCCAACTTGCCTGCCATTGCCAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

317

Amino Acids

35.54

Weight (kDa)

6.33

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	23 - 66	5.2e-06	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	65 - 291	6.8e-54	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccB1I	GGYRCC	2 cut(s)	218, 278
AccBSI	CCGCTC	1 cut(s)	203
AciI	CCGC	4 cut(s)	28, 203, 312, 336
AclWI	GGATC	4 cut(s)	27, 805, 818, 918
AcyI	GRCGYC	1 cut(s)	641
AfaI	GTAC	2 cut(s)	452, 869
AfiI	CCNNNNNNNGG	2 cut(s)	215, 820
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	8 cut(s)	13, 472, 512, 525, 626, 658, 893, 902
AjnI	CCWGG	1 cut(s)	244
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
AluBI	AGCT	7 cut(s)	133, 194, 411, 467, 788, 913, 949
AluI	AGCT	7 cut(s)	133, 194, 411, 467, 788, 913, 949
Alw21I	GWGCWC	2 cut(s)	556, 915
Alw26I	GTCTC	1 cut(s)	850
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	4 cut(s)	27, 805, 818, 918
AoxI	GGCC	1 cut(s)	89
ApaLI	GTGCAC	1 cut(s)	552
ApeKI	GCWGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	17, 716
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	2 cut(s)	283, 556
BamHI	GGATCC	1 cut(s)	810
BanI	GGYRCC	2 cut(s)	218, 278
BanII	GRGCYC	1 cut(s)	915
Bbv12I	GWGCWC	2 cut(s)	556, 915
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	2 cut(s)	575, 850
BciT130I	CCWGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	850
BfaI	CTAG	4 cut(s)	317, 356, 557, 908
BfrI	CTTAAG	1 cut(s)	632
BglII	AGATCT	1 cut(s)	671
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
BmcAI	AGTACT	1 cut(s)	452
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	5 cut(s)	207, 220, 280, 812, 825
BmrFI	CCNGG	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	391
BsaHI	GRCGYC	1 cut(s)	641
BsaJI	CCNNGG	2 cut(s)	253, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 820
Bse1I	ACTGG	2 cut(s)	280, 798
Bse3DI	GCAATG	2 cut(s)	490, 939
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	253, 605
BseGI	GGATG	4 cut(s)	434, 508, 614, 889
BseLI	CCNNNNNNNGG	2 cut(s)	215, 820
BseMI	GCAATG	2 cut(s)	490, 939
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	280, 798
BseSI	GKGCMC	2 cut(s)	283, 556
BseXI	GCAGC	1 cut(s)	120
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	2 cut(s)	218, 278
BsiHKAI	GWGCWC	2 cut(s)	556, 915
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	215, 820
BsmAI	GTCTC	1 cut(s)	850
BsmBI	CGTCTC	1 cut(s)	850
BsnI	GGCC	1 cut(s)	91
Bsp1286I	GDGCHC	3 cut(s)	283, 556, 915
Bsp143I	GATC	6 cut(s)	19, 415, 671, 810, 862, 923
Bsp19I	CCATGG	1 cut(s)	605
BspACI	CCGC	4 cut(s)	28, 203, 312, 336
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	5 cut(s)	207, 220, 280, 812, 825
BspPI	GGATC	4 cut(s)	27, 805, 818, 918
BspT107I	GGYRCC	2 cut(s)	218, 278
BspTI	CTTAAG	1 cut(s)	632
BsrBI	CCGCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	490, 939
BsrI	ACTGG	2 cut(s)	280, 798
BssECI	CCNNGG	2 cut(s)	253, 605
BssMI	GATC	6 cut(s)	19, 415, 671, 810, 862, 923
BssNI	GRCGYC	1 cut(s)	641
BssT1I	CCWWGG	2 cut(s)	253, 605
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	144, 293, 535
BstACI	GRCGYC	1 cut(s)	641
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	3 cut(s)	306, 310, 936
BstDEI	CTNAG	2 cut(s)	129, 137
BstDSI	CCRYGG	1 cut(s)	605
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstF5I	GGATG	4 cut(s)	434, 508, 614, 889
BstKTI	GATC	6 cut(s)	22, 418, 674, 813, 865, 926
BstMAI	GTCTC	1 cut(s)	850
BstMBI	GATC	6 cut(s)	19, 415, 671, 810, 862, 923
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 200
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstSLI	GKGCMC	2 cut(s)	283, 556
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	3 cut(s)	671, 810, 923
BstYI	RGATCY	3 cut(s)	671, 810, 923
BsuRI	GGCC	1 cut(s)	91
BtgI	CCRYGG	1 cut(s)	605
BtsCI	GGATG	4 cut(s)	434, 508, 614, 889
Cac8I	GCNNGC	3 cut(s)	306, 310, 936
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	1 cut(s)	630
Csp6I	GTAC	2 cut(s)	451, 868
CviAII	CATG	4 cut(s)	155, 161, 587, 606
CviQI	GTAC	2 cut(s)	451, 868
DdeI	CTNAG	2 cut(s)	129, 137
DpnI	GATC	6 cut(s)	21, 417, 673, 812, 864, 925
DpnII	GATC	6 cut(s)	19, 415, 671, 810, 862, 923
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	913
Eco130I	CCWWGG	2 cut(s)	253, 605
Eco147I	AGGCCT	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	915
Eco47I	GGWCC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	913
EcoICRI	GAGCTC	1 cut(s)	913
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	253, 605
EcoT38I	GRGCYC	1 cut(s)	915
ErhI	CCWWGG	2 cut(s)	253, 605
Esp3I	CGTCTC	1 cut(s)	850
FaeI	CATG	4 cut(s)	158, 164, 590, 609
FatI	CATG	4 cut(s)	154, 160, 586, 605
FauI	CCCGC	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	4 cut(s)	421, 515, 601, 896
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	4 cut(s)	317, 356, 557, 908
GluI	GCNGC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	630
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	4 cut(s)	158, 164, 590, 609
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HindIII	AAGCTT	2 cut(s)	192, 947
HinfI	GANTC	1 cut(s)	249
HpaI	GTTAAC	1 cut(s)	612
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	17, 716
Hpy166II	GTNNAC	2 cut(s)	554, 612
Hpy188I	TCNGA	3 cut(s)	45, 773, 850
Hpy188III	TCNNGA	6 cut(s)	35, 209, 237, 296, 719, 874
Hpy8I	GTNNAC	2 cut(s)	554, 612
Hpy99I	CGWCG	1 cut(s)	646
HpyAV	CCTTC	4 cut(s)	556, 631, 677, 681
HpyCH4III	ACNGT	3 cut(s)	144, 293, 535
HpyCH4V	TGCA	4 cut(s)	554, 746, 783, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 200
HpyF3I	CTNAG	2 cut(s)	129, 137
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	4 cut(s)	158, 164, 590, 609
KspAI	GTTAAC	1 cut(s)	612
Kzo9I	GATC	6 cut(s)	19, 415, 671, 810, 862, 923
LmnI	GCTCC	3 cut(s)	200, 823, 918
Lsp1109I	GCAGC	1 cut(s)	120
MaeI	CTAG	4 cut(s)	317, 356, 557, 908
MalI	GATC	6 cut(s)	21, 417, 673, 812, 864, 925
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	6 cut(s)	19, 415, 671, 810, 862, 923
MboII	GAAGA	4 cut(s)	551, 670, 905, 914
MflI	RGATCY	3 cut(s)	671, 810, 923
MhlI	GDGCHC	3 cut(s)	283, 556, 915
MluCI	AATT	4 cut(s)	58, 369, 621, 833
MmeI	TCCRAC	3 cut(s)	484, 861, 951
MnlI	CCTC	8 cut(s)	31, 63, 102, 232, 415, 473, 559, 769
MseI	TTAA	7 cut(s)	57, 102, 368, 389, 611, 633, 952
MslI	CAYNNNNRTG	3 cut(s)	102, 159, 591
MspA1I	CMGCKG	1 cut(s)	133
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	130, 200
NcoI	CCATGG	1 cut(s)	605
NdeII	GATC	6 cut(s)	19, 415, 671, 810, 862, 923
NlaIII	CATG	4 cut(s)	158, 164, 590, 609
NlaIV	GGNNCC	5 cut(s)	207, 220, 280, 812, 825
PceI	AGGCCT	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	249
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	5 cut(s)	207, 220, 280, 812, 825
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	3 cut(s)	671, 810, 923
PvuII	CAGCTG	1 cut(s)	133
RsaI	GTAC	2 cut(s)	452, 869
RsaNI	GTAC	2 cut(s)	451, 868
RseI	CAYNNNNRTG	3 cut(s)	102, 159, 591
SacI	GAGCTC	1 cut(s)	915
SaqAI	TTAA	7 cut(s)	57, 102, 368, 389, 611, 633, 952
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	6 cut(s)	19, 415, 671, 810, 862, 923
Sau96I	GGNCC	1 cut(s)	293
ScaI	AGTACT	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	3 cut(s)	283, 556, 915
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	3 cut(s)	102, 159, 591
SmlI	CTYRAG	2 cut(s)	406, 632
SmoI	CTYRAG	2 cut(s)	406, 632
Sse9I	AATT	4 cut(s)	58, 369, 621, 833
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	4 cut(s)	28, 203, 312, 336
SspMI	CTAG	4 cut(s)	317, 356, 557, 908
SstI	GAGCTC	1 cut(s)	915
StuI	AGGCCT	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	2 cut(s)	253, 605
TaaI	ACNGT	3 cut(s)	144, 293, 535
TaqI	TCGA	3 cut(s)	94, 718, 875
TasI	AATT	4 cut(s)	58, 369, 621, 833
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	7 cut(s)	57, 102, 368, 389, 611, 633, 952
Tru9I	TTAA	7 cut(s)	57, 102, 368, 389, 611, 633, 952
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	51, 411, 423, 900
Vha464I	CTTAAG	1 cut(s)	632
VneI	GTGCAC	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	293
XagI	CCTNNNNNAGG	1 cut(s)	213
XspI	CTAG	4 cut(s)	317, 356, 557, 908
ZrmI	AGTACT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.