Rroxscaffold_2G00134050

sphingolipid transporter spinster homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
71524350 .. 71530457
6108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134050.1

Sequence Viewer

Length: 1509 bp
ATGACAAAGAACCCCAAGGCAGCAATCTCAGCTCCAAAGCCTTCCTGGTTCTCCCCCGAAAGGTTGCTGTTAATCCTGTGTCTGGTTAACTTGATAAATTATATTGATCGAGGAGCAATAGCCAGCAATGGGGTCAATGGGAGTATTGGGATTTGCGATGAGACCGGAATTTGCCATGCCGGTACCGGAATTCAGGGGGATTTTAAATTGAACAACTTTCAAGATGGTGTTCTATCATCTGCGTTCATGGTTGGGCTTCTCGTGGCCTCACCCATCTTTGCATCCTTGGCAAAGAGCCACAATCCTTTTAGGCTGATTGGAGTTGGGTTATCTATTTGGACATTTGCCACAGCTGGGTGTGGCAGTTCATTTAATTTCTGGTCCATTGCAATATGTCGCATGCTGGTTGGAGTCGGTGAGGCATCTTTCATAAGTCTTGCAGCTCCGTTCATTGATGACCATGCCCCTGCAGATCAGAAATCAGCATGGCTGGCAATGTTTTACATGTGTATACCAACTGGAGTCGCTATAGGCTATGTTTACGGCGGATTTGTGGGAGAGAGCATCAATTGGCGTTGTGCATTCTGGGGAGAGGCCCTTCTAATGCTTCCCTTTGCTGTCTTGGGTTTTGCAGTGAAACCATTGCAGCTGAAAGGTTTACCTCCTACTGAATCGACAGAGCTTTTGGAATCTATTGAAACTAGTCCTTTAATAGAAGAATCAGAGATCCCAAATATAAATGGTCGTGTGACAGTTGATTGCGATGAGACTTCTTGCTCATGCCCTACAACCAAATTTTTGGACCAAGTTTCAAGCTTCTCAAAGGATTTGAAAGTACTTCTGCTTGATAAAGTTTACATTGTTAATGTATTAGGTTATGTGTCATACAACTTTGTCATTGGAACCTACTCATACTGGGGGCCAAAGGCTGGTTATAACATTTACCATATGAGTAATCCAGATCTGATGTTCGGAGGTATTACTATTCTCTGTGGAATTCTAGGAACTTTAACTGGAGGGCTCATCCTTGATGCAGTGGGTGCCACAATTCACAATGCTTTTAAGCTTCTTGCTGGATCGACAATGCTAGGTGCAATATTTTGTTTCAGTGCGTTTTGTGCAAAGAGCCTGCACATCTTTGTAGTTTTTTTCTCACTGGGGGAGCTACTTCTGTTTTCAACACAGGCTCCAGTAAATTATGTGTCTCTGCACTGCGTCAAACCAGGGCTAAGGCCATTGTCTATGGCTATCTCAACTCTTTCAATCCACATATTTGGTGATGTTCCTTCCTCGCCTCTTGTCGGAATCGTTCAGGATTATGTTCACAACTGGAGGGAAACGACTCTAATCTTTACCTCTGTCTACTTTGTTGCATCAGGAATATGGTTCATAGGGATCTTCCTTAATAGTGTGGACAAGTTTGAGGAAGATGATGAAGAAGAAGTCTCTACATTAGTTCAAGCCAACAAAGAACCATTGCTTGAAGAGCACCACTTAAGGAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

502

Amino Acids

54.45

Weight (kDa)

5.15

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 63 - 421 4.6e-32 Major Facilitator Superfamily
OATP PF03137 126 - 372 4.9e-17 Organic Anion Transporter Polypeptide (OATP) family
OATP PF03137 372 - 439 1.6e-07 Organic Anion Transporter Polypeptide (OATP) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 2 cut(s) 182, 1040
AccB7I CCANNNNNTGG 1 cut(s) 929
AccI GTMKAC 2 cut(s) 511, 1362
AciI CCGC 1 cut(s) 546
AclWI GGATC 3 cut(s) 721, 1084, 1403
AcsI RAATTY 4 cut(s) 168, 189, 794, 996
AfaI GTAC 2 cut(s) 184, 837
AfiI CCNNNNNNNGG 6 cut(s) 60, 82, 129, 354, 929, 1301
AflII CTTAAG 1 cut(s) 1495
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 9 cut(s) 211, 221, 698, 813, 832, 1179, 1263, 1460, 1484
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 2 cut(s) 44, 1222
AluBI AGCT 8 cut(s) 32, 353, 443, 649, 682, 816, 1066, 1165
AluI AGCT 8 cut(s) 32, 353, 443, 649, 682, 816, 1066, 1165
Alw21I GWGCWC 1 cut(s) 1491
Alw26I GTCTC 4 cut(s) 155, 761, 1209, 1450
AlwI GGATC 3 cut(s) 721, 1084, 1403
AoxI GGCC 4 cut(s) 264, 594, 920, 1232
ApeKI GCWGC 3 cut(s) 20, 440, 646
ApoI RAATTY 4 cut(s) 168, 189, 794, 996
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
Asp718I GGTACC 1 cut(s) 182
AspS9I GGNCC 4 cut(s) 381, 595, 802, 920
AsuHPI GGTGA 3 cut(s) 261, 428, 1289
AvaII GGWCC 2 cut(s) 381, 802
BanI GGYRCC 2 cut(s) 182, 1040
BanII GRGCYC 1 cut(s) 1023
BauI CACGAG 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 1491
BbvI GCAGC 3 cut(s) 32, 452, 658
BccI CCATC 2 cut(s) 218, 281
BceAI ACGGC 1 cut(s) 559
BciT130I CCWGG 2 cut(s) 46, 1224
BcoDI GTCTC 4 cut(s) 155, 761, 1209, 1450
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 4 cut(s) 702, 1001, 1088, 1507
BfmI CTRYAG 2 cut(s) 468, 528
BfrI CTTAAG 1 cut(s) 1495
BglII AGATCT 1 cut(s) 961
BisI GCNGC 3 cut(s) 21, 441, 647
BlsI GCNGC 3 cut(s) 22, 442, 648
BmcAI AGTACT 1 cut(s) 837
Bme1390I CCNGG 2 cut(s) 46, 1224
Bme18I GGWCC 2 cut(s) 381, 802
BmgT120I GGNCC 4 cut(s) 381, 595, 802, 920
BmiI GGNNCC 5 cut(s) 184, 904, 921, 1042, 1188
BmrFI CCNGG 2 cut(s) 46, 1224
BmrI ACTGGG 2 cut(s) 925, 1166
BmsI GCATC 5 cut(s) 290, 431, 573, 1021, 1382
BmuI ACTGGG 2 cut(s) 925, 1166
BpmI CTGGAG 4 cut(s) 540, 1035, 1173, 1351
Bpu10I CCTNAGC 1 cut(s) 1229
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 15, 285, 1223
BsaWI WCCGGW 2 cut(s) 164, 185
BsaXI ACNNNNNCTCC 2 cut(s) 1171, 1201
Bsc4I CCNNNNNNNGG 6 cut(s) 60, 82, 129, 354, 929, 1301
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 6 cut(s) 523, 920, 1018, 1161, 1190, 1334
Bse3DI GCAATG 5 cut(s) 133, 384, 501, 641, 1475
BseBI CCWGG 2 cut(s) 46, 1224
BseDI CCNNGG 3 cut(s) 15, 285, 1223
BseGI GGATG 2 cut(s) 281, 1023
BseLI CCNNNNNNNGG 6 cut(s) 60, 82, 129, 354, 929, 1301
BseMI GCAATG 5 cut(s) 133, 384, 501, 641, 1475
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 6 cut(s) 523, 920, 1018, 1161, 1190, 1334
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 3 cut(s) 32, 452, 658
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 2 cut(s) 1115, 1193
BshFI GGCC 4 cut(s) 266, 596, 922, 1234
BshNI GGYRCC 2 cut(s) 182, 1040
BsiHKAI GWGCWC 1 cut(s) 1491
BsiSI CCGG 3 cut(s) 165, 180, 186
BslI CCNNNNNNNGG 6 cut(s) 60, 82, 129, 354, 929, 1301
BsmAI GTCTC 4 cut(s) 155, 761, 1209, 1450
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 4 cut(s) 266, 596, 922, 1234
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 1023, 1491
Bsp143I GATC 6 cut(s) 106, 472, 726, 961, 1076, 1395
BspACI CCGC 1 cut(s) 546
BspANI GGCC 4 cut(s) 266, 596, 922, 1234
BspCNI CTCAG 1 cut(s) 41
BspLI GGNNCC 5 cut(s) 184, 904, 921, 1042, 1188
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 3 cut(s) 721, 1084, 1403
BspQI GCTCTTC 1 cut(s) 1479
BspT107I GGYRCC 2 cut(s) 182, 1040
BspTI CTTAAG 1 cut(s) 1495
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 5 cut(s) 133, 384, 501, 641, 1475
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 6 cut(s) 523, 920, 1018, 1161, 1190, 1334
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 15, 285, 1223
BssMI GATC 6 cut(s) 106, 472, 726, 961, 1076, 1395
BssNAI GTATAC 1 cut(s) 512
BssSI CACGAG 1 cut(s) 260
BssT1I CCWWGG 2 cut(s) 15, 285
Bst1107I GTATAC 1 cut(s) 512
Bst2BI CACGAG 1 cut(s) 260
Bst2UI CCWGG 2 cut(s) 46, 1224
Bst4CI ACNGT 1 cut(s) 754
Bst6I CTCTTC 1 cut(s) 1479
BstAFI CTTAAG 1 cut(s) 1495
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstC8I GCNNGC 4 cut(s) 124, 401, 492, 1130
BstDEI CTNAG 2 cut(s) 28, 1229
BstF5I GGATG 2 cut(s) 281, 1023
BstKTI GATC 6 cut(s) 109, 475, 729, 964, 1079, 1398
BstMAI GTCTC 4 cut(s) 155, 761, 1209, 1450
BstMBI GATC 6 cut(s) 106, 472, 726, 961, 1076, 1395
BstMWI GCNNNNNNNGC 6 cut(s) 29, 287, 491, 1040, 1118, 1486
BstNI CCWGG 2 cut(s) 46, 1224
BstNSI RCATGY 2 cut(s) 403, 508
BstSCI CCNGG 2 cut(s) 44, 1222
BstSFI CTRYAG 2 cut(s) 468, 528
BstV1I GCAGC 3 cut(s) 32, 452, 658
BstX2I RGATCY 3 cut(s) 726, 961, 1395
BstXI CCANNNNNNTGG 2 cut(s) 799, 1274
BstYI RGATCY 3 cut(s) 726, 961, 1395
BstZ17I GTATAC 1 cut(s) 512
BsuRI GGCC 4 cut(s) 266, 596, 922, 1234
BtgZI GCGATG 2 cut(s) 171, 777
BtsCI GGATG 2 cut(s) 281, 1023
BtsI GCAGTG 3 cut(s) 639, 1041, 1210
BtsIMutI CAGTG 5 cut(s) 639, 1041, 1114, 1154, 1210
Cac8I GCNNGC 4 cut(s) 124, 401, 492, 1130
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 4 cut(s) 381, 595, 802, 920
CseI GACGC 1 cut(s) 1204
Csp6I GTAC 2 cut(s) 183, 836
CviAII CATG 7 cut(s) 176, 247, 400, 461, 486, 505, 780
CviQI GTAC 2 cut(s) 183, 836
DdeI CTNAG 2 cut(s) 28, 1229
DpnI GATC 6 cut(s) 108, 474, 728, 963, 1078, 1397
DpnII GATC 6 cut(s) 106, 472, 726, 961, 1076, 1395
DraI TTTAAA 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 1479
EarI CTCTTC 1 cut(s) 1479
EciI GGCGGA 1 cut(s) 561
Eco130I CCWWGG 2 cut(s) 15, 285
Eco24I GRGCYC 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 381, 802
EcoO109I RGGNCCY 1 cut(s) 595
EcoRI GAATTC 2 cut(s) 189, 996
EcoRII CCWGG 2 cut(s) 44, 1222
EcoT14I CCWWGG 2 cut(s) 15, 285
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 2 cut(s) 15, 285
FaeI CATG 7 cut(s) 179, 250, 403, 464, 489, 508, 783
FatI CATG 7 cut(s) 175, 246, 399, 460, 485, 504, 779
FauNDI CATATG 1 cut(s) 948
FblI GTMKAC 2 cut(s) 511, 1362
Fnu4HI GCNGC 3 cut(s) 21, 441, 647
FokI GGATG 2 cut(s) 268, 1010
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 3 cut(s) 21, 441, 647
FspBI CTAG 4 cut(s) 702, 1001, 1088, 1507
GluI GCNGC 3 cut(s) 21, 441, 647
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 4 cut(s) 540, 1035, 1173, 1351
HaeIII GGCC 4 cut(s) 266, 596, 922, 1234
HapII CCGG 3 cut(s) 165, 180, 186
HgaI GACGC 1 cut(s) 1204
Hin1II CATG 7 cut(s) 179, 250, 403, 464, 489, 508, 783
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 2 cut(s) 814, 1064
HinfI GANTC 7 cut(s) 411, 522, 671, 689, 719, 1305, 1342
HpaI GTTAAC 1 cut(s) 88
HpaII CCGG 3 cut(s) 165, 180, 186
HphI GGTGA 3 cut(s) 261, 428, 1289
Hpy166II GTNNAC 8 cut(s) 88, 512, 541, 659, 856, 1324, 1363, 1414
Hpy188I TCNGA 5 cut(s) 477, 724, 966, 974, 1304
Hpy188III TCNNGA 4 cut(s) 221, 959, 1313, 1377
Hpy8I GTNNAC 8 cut(s) 88, 512, 541, 659, 856, 1324, 1363, 1414
HpyAV CCTTC 4 cut(s) 51, 608, 1296, 1495
HpyCH4III ACNGT 1 cut(s) 754
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 287, 491, 1040, 1118, 1486
HpyF3I CTNAG 2 cut(s) 28, 1229
Hsp92II CATG 7 cut(s) 179, 250, 403, 464, 489, 508, 783
KpnI GGTACC 1 cut(s) 186
KspAI GTTAAC 1 cut(s) 88
Kzo9I GATC 6 cut(s) 106, 472, 726, 961, 1076, 1395
LguI GCTCTTC 1 cut(s) 1479
LmnI GCTCC 5 cut(s) 37, 113, 448, 1162, 1192
Lsp1109I GCAGC 3 cut(s) 32, 452, 658
LweI GCATC 5 cut(s) 290, 431, 573, 1021, 1382
MaeI CTAG 4 cut(s) 702, 1001, 1088, 1507
MaeIII GTNAC 1 cut(s) 748
MalI GATC 6 cut(s) 108, 474, 728, 963, 1078, 1397
MboI GATC 6 cut(s) 106, 472, 726, 961, 1076, 1395
MboII GAAGA 6 cut(s) 728, 1390, 1439, 1448, 1451, 1496
MfeI CAATTG 1 cut(s) 568
MflI RGATCY 3 cut(s) 726, 961, 1395
MhlI GDGCHC 2 cut(s) 1023, 1491
MlyI GAGTC 3 cut(s) 420, 531, 1336
MmeI TCCRAC 2 cut(s) 388, 1282
MspA1I CMGCKG 2 cut(s) 353, 649
MspCI CTTAAG 1 cut(s) 1495
MspI CCGG 3 cut(s) 165, 180, 186
MspR9I CCNGG 2 cut(s) 46, 1224
MunI CAATTG 1 cut(s) 568
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 2 cut(s) 46, 1224
MwoI GCNNNNNNNGC 6 cut(s) 29, 287, 491, 1040, 1118, 1486
NdeI CATATG 1 cut(s) 948
NdeII GATC 6 cut(s) 106, 472, 726, 961, 1076, 1395
NlaIII CATG 7 cut(s) 179, 250, 403, 464, 489, 508, 783
NlaIV GGNNCC 5 cut(s) 184, 904, 921, 1042, 1188
NmuCI GTSAC 1 cut(s) 748
NspI RCATGY 2 cut(s) 403, 508
PaeI GCATGC 1 cut(s) 403
PciI ACATGT 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 1479
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 4 cut(s) 671, 689, 719, 1305
PflMI CCANNNNNTGG 1 cut(s) 929
PkrI GCNGC 3 cut(s) 22, 442, 648
PleI GAGTC 3 cut(s) 419, 530, 1336
PpsI GAGTC 3 cut(s) 419, 530, 1336
PscI ACATGT 1 cut(s) 504
PsiI TTATAA 1 cut(s) 936
Psp6I CCWGG 2 cut(s) 44, 1222
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 2 cut(s) 44, 1222
PspN4I GGNNCC 5 cut(s) 184, 904, 921, 1042, 1188
PspPI GGNCC 4 cut(s) 381, 595, 802, 920
PstI CTGCAG 1 cut(s) 472
PsuI RGATCY 3 cut(s) 726, 961, 1395
PvuII CAGCTG 2 cut(s) 353, 649
RsaI GTAC 2 cut(s) 184, 837
RsaNI GTAC 2 cut(s) 183, 836
SapI GCTCTTC 1 cut(s) 1479
SatI GCNGC 3 cut(s) 21, 441, 647
Sau3AI GATC 6 cut(s) 106, 472, 726, 961, 1076, 1395
Sau96I GGNCC 4 cut(s) 381, 595, 802, 920
ScaI AGTACT 1 cut(s) 837
SchI GAGTC 3 cut(s) 420, 531, 1336
ScrFI CCNGG 2 cut(s) 46, 1224
SduI GDGCHC 2 cut(s) 1023, 1491
SfaNI GCATC 5 cut(s) 290, 431, 573, 1021, 1382
SfcI CTRYAG 2 cut(s) 468, 528
SinI GGWCC 2 cut(s) 381, 802
SmlI CTYRAG 1 cut(s) 1495
SmoI CTYRAG 1 cut(s) 1495
SpeI ACTAGT 1 cut(s) 701
SphI GCATGC 1 cut(s) 403
SsiI CCGC 1 cut(s) 546
SspI AATATT 1 cut(s) 1098
SspMI CTAG 4 cut(s) 702, 1001, 1088, 1507
StyD4I CCNGG 2 cut(s) 44, 1222
StyI CCWWGG 2 cut(s) 15, 285
TaaI ACNGT 1 cut(s) 754
TaqI TCGA 3 cut(s) 109, 674, 1079
TatI WGTACW 1 cut(s) 835
TfiI GAWTC 4 cut(s) 671, 689, 719, 1305
TscAI CASTG 5 cut(s) 639, 1041, 1114, 1161, 1217
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 3 cut(s) 20, 440, 646
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 6 cut(s) 235, 357, 418, 439, 1378, 1449
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 5 cut(s) 639, 1041, 1114, 1161, 1217
Van91I CCANNNNNTGG 1 cut(s) 929
Vha464I CTTAAG 1 cut(s) 1495
VpaK11BI GGWCC 2 cut(s) 381, 802
XapI RAATTY 4 cut(s) 168, 189, 794, 996
XceI RCATGY 2 cut(s) 403, 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
XmiI GTMKAC 2 cut(s) 511, 1362
XspI CTAG 4 cut(s) 702, 1001, 1088, 1507
ZrmI AGTACT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.