Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Reverse (-)

9972307 .. 9973112

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATTCTGGTTGAGGATCTAAAGAACGAATGCAATCATCGAATTAAAGAAATGTCCGACACTCGGAGGCTATGGTGTGGAGGTTTCTTTCCCAATTTATTCTCGGATCCGGCTGCGCTAGCGTATGATCCGTCGTTGAGGGATGGGATCGACGTTGGGTGGATCCACGATGCGGCGATGGGACAGGTGGCGGTGCTACCACGGGTAGGTGGAGGGATAGAGAGGGGTGGTGTTTGGGCGGGTTTCTTCTCGGGTCCGGATCCCCGATCCGGATCACGGCTGCGTGGGGATGGGATCGTGGAGTTGGATGATGTCCTCCCGTGGTGGTTTGATGACGGTGAGAGAGCGGCGATAGTGGAGACCCGACGTCGATGGTGGAGTGGTAGGCGTGGTGGTGCAAGCGAGATCTTGGGGTGGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.57

Weight (kDa)

5.16

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	370
AccBSI	CCGCTC	1 cut(s)	347
AccIII	TCCGGA	2 cut(s)	256, 269
AciI	CCGC	4 cut(s)	173, 191, 239, 347
AcyI	GRCGYC	1 cut(s)	367
AfiI	CCNNNNNNNGG	5 cut(s)	63, 172, 206, 269, 276
AhdI	GACNNNNNGTC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	250
Aor13HI	TCCGGA	2 cut(s)	256, 269
ApeKI	GCWGC	2 cut(s)	113, 280
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	350
AsuNHI	GCTAGC	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	3 cut(s)	106, 162, 259
BbvI	GCAGC	2 cut(s)	100, 267
BccI	CCATC	4 cut(s)	137, 172, 284, 366
BceAI	ACGGC	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	119
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	4 cut(s)	114, 174, 281, 348
BlsI	GCNGC	4 cut(s)	115, 175, 282, 349
Bme18I	GGWCC	1 cut(s)	254
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	4 cut(s)	108, 164, 255, 261
BmsI	GCATC	1 cut(s)	160
BmtI	GCTAGC	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	367
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	200, 320
BsaWI	WCCGGW	2 cut(s)	256, 269
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 172, 206, 269, 276
Bse8I	GATNNNNATC	1 cut(s)	271
BseAI	TCCGGA	2 cut(s)	256, 269
BseDI	CCNNGG	2 cut(s)	200, 320
BseGI	GGATG	3 cut(s)	148, 295, 313
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	5 cut(s)	63, 172, 206, 269, 276
BseXI	GCAGC	2 cut(s)	100, 267
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	110, 257, 270
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	5 cut(s)	63, 172, 206, 269, 276
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	195
BsmI	GAATGC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	250
Bsp13I	TCCGGA	2 cut(s)	256, 269
BspACI	CCGC	4 cut(s)	173, 191, 239, 347
BspEI	TCCGGA	2 cut(s)	256, 269
BspLI	GGNNCC	4 cut(s)	108, 164, 255, 261
BspOI	GCTAGC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	200, 320
BssNI	GRCGYC	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	120, 400
BstDSI	CCRYGG	2 cut(s)	200, 320
BstF5I	GGATG	3 cut(s)	148, 295, 313
BstHHI	GCGC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	100, 267
BstX2I	RGATCY	5 cut(s)	16, 106, 162, 259, 405
BstYI	RGATCY	5 cut(s)	16, 106, 162, 259, 405
BtgI	CCRYGG	2 cut(s)	200, 320
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	3 cut(s)	148, 295, 313
Cac8I	GCNNGC	2 cut(s)	120, 400
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	254
CviJI	RGCY	3 cut(s)	70, 113, 280
CviKI_1	RGCY	3 cut(s)	70, 113, 280
DriI	GACNNNNNGTC	1 cut(s)	366
Eam1105I	GACNNNNNGTC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	250
FaiI	YATR	2 cut(s)	73, 126
FaqI	GGGAC	1 cut(s)	195
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	114, 174, 281, 348
FokI	GGATG	3 cut(s)	155, 302, 320
Fsp4HI	GCNGC	4 cut(s)	114, 174, 281, 348
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	4 cut(s)	114, 174, 281, 348
HapII	CCGG	3 cut(s)	110, 257, 270
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	3 cut(s)	110, 257, 270
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	3 cut(s)	58, 66, 106
Hpy188III	TCNNGA	2 cut(s)	257, 270
Hpy99I	CGWCG	4 cut(s)	136, 155, 369, 372
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	2 cut(s)	153, 367
HpyCH4V	TGCA	2 cut(s)	33, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpySE526I	ACGT	2 cut(s)	153, 367
Hsp92I	GRCGYC	1 cut(s)	367
HspAI	GCGC	1 cut(s)	116
Kpn2I	TCCGGA	2 cut(s)	256, 269
LpnPI	CCDG	4 cut(s)	123, 170, 270, 283
Lsp1109I	GCAGC	2 cut(s)	100, 267
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	2 cut(s)	153, 367
MbiI	CCGCTC	1 cut(s)	347
MboII	GAAGA	1 cut(s)	238
MflI	RGATCY	5 cut(s)	16, 106, 162, 259, 405
MluCI	AATT	2 cut(s)	42, 94
MmeI	TCCRAC	2 cut(s)	81, 285
MnlI	CCTC	7 cut(s)	7, 60, 74, 132, 206, 216, 326
MroI	TCCGGA	2 cut(s)	256, 269
MseI	TTAA	1 cut(s)	45
MspI	CCGG	3 cut(s)	110, 257, 270
Mva1269I	GAATGC	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	119
NheI	GCTAGC	1 cut(s)	118
NlaIV	GGNNCC	4 cut(s)	108, 164, 255, 261
PctI	GAATGC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	115, 175, 282, 349
PspN4I	GGNNCC	4 cut(s)	108, 164, 255, 261
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	5 cut(s)	16, 106, 162, 259, 405
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	4 cut(s)	114, 174, 281, 348
Sau96I	GGNCC	1 cut(s)	254
SetI	ASST	5 cut(s)	85, 156, 189, 211, 370
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	2 cut(s)	42, 94
SsiI	CCGC	4 cut(s)	173, 191, 239, 347
SspMI	CTAG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	2 cut(s)	156, 370
TaqI	TCGA	3 cut(s)	40, 150, 370
TasI	AATT	2 cut(s)	42, 94
TauI	GCSGC	2 cut(s)	176, 350
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseI	GCWGC	2 cut(s)	113, 280
TspGWI	ACGGA	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	254
XspI	CTAG	1 cut(s)	119
ZraI	GACGTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.