Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Reverse (-)

22616885 .. 22617835

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0244800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCCGCCGCTCTTTCACCGACCTCCGACTATCCTAACACGACGTACGTTCTCTACGCCTCCATCTCCAGCCTGATGCCCATATTCAAAGCACACAATCTCCTCGGCTACGTCGACTGCTCCATCACGCCGCCGGAGAAGTTCTTCCCGAACGACGCCGGAGAACCGACGATCGCGATCAGCTCGAGCTACAAAATCTGGATGGTGCACGAGGCCAAATTTAAGCCGCCCGAGACGTCAGAAACTTGGTCAGAAAGTCGTCTTCTTCCTCCTCCTCTTCTTCTTCTGCGGCCAAGACTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

101

Amino Acids

11.28

Weight (kDa)

5.58

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	176
AciI	CCGC	5 cut(s)	6, 9, 131, 227, 289
AcoI	YGGCCR	2 cut(s)	3, 290
AcsI	RAATTY	1 cut(s)	218
AcyI	GRCGYC	2 cut(s)	156, 236
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	2 cut(s)	183, 189
AluI	AGCT	2 cut(s)	183, 189
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	206
Ama87I	CYCGRG	2 cut(s)	184, 230
AoxI	GGCC	3 cut(s)	3, 213, 290
ApaLI	GTGCAC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	9
AvaI	CYCGRG	2 cut(s)	184, 230
BaeGI	GKGCMC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	3 cut(s)	71, 131, 196
BcoDI	GTCTC	1 cut(s)	227
BisI	GCNGC	5 cut(s)	6, 9, 131, 227, 290
BlsI	GCNGC	5 cut(s)	7, 10, 132, 228, 291
BmeT110I	CYCGRG	2 cut(s)	184, 230
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	2 cut(s)	156, 236
BsaJI	CCNNGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse8I	GATNNNNATC	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	207
BseJI	GATNNNNATC	1 cut(s)	176
BseRI	GAGGAG	3 cut(s)	92, 261, 264
BseSI	GKGCMC	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	5, 215, 292
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	2 cut(s)	184, 230
BsiSI	CCGG	2 cut(s)	134, 159
BsiWI	CGTACG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsnI	GGCC	3 cut(s)	5, 215, 292
BsoBI	CYCGRG	2 cut(s)	184, 230
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	171, 177
Bsp68I	TCGCGA	1 cut(s)	176
BspACI	CCGC	5 cut(s)	6, 9, 131, 227, 289
BspANI	GGCC	3 cut(s)	5, 215, 292
BspFNI	CGCG	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	171, 177
BssNI	GRCGYC	2 cut(s)	156, 236
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	2 cut(s)	156, 236
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	2 cut(s)	174, 180
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	171, 177
BstMCI	CGRYCG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	210
BstUI	CGCG	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	5, 215, 292
BtsCI	GGATG	1 cut(s)	207
BtuMI	TCGCGA	1 cut(s)	176
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	46
CviJI	RGCY	8 cut(s)	5, 72, 108, 183, 189, 215, 226, 292
CviKI_1	RGCY	8 cut(s)	5, 72, 108, 183, 189, 215, 226, 292
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	2 cut(s)	173, 179
DpnII	GATC	2 cut(s)	171, 177
EaeI	YGGCCR	2 cut(s)	3, 290
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	184, 230
Esp3I	CGTCTC	1 cut(s)	227
FaiI	YATR	1 cut(s)	83
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	5 cut(s)	6, 9, 131, 227, 290
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	5 cut(s)	6, 9, 131, 227, 290
GluI	GCNGC	5 cut(s)	6, 9, 131, 227, 290
GsuI	CTGGAG	1 cut(s)	52
HaeIII	GGCC	3 cut(s)	5, 215, 292
HapII	CCGG	2 cut(s)	134, 159
HgaI	GACGC	1 cut(s)	164
Hin1I	GRCGYC	2 cut(s)	156, 236
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	297
HpaII	CCGG	2 cut(s)	134, 159
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	2 cut(s)	115, 208
Hpy188I	TCNGA	3 cut(s)	28, 241, 253
Hpy188III	TCNNGA	3 cut(s)	148, 175, 199
Hpy8I	GTNNAC	2 cut(s)	115, 208
Hpy99I	CGWCG	4 cut(s)	46, 116, 158, 172
HpyCH4IV	ACGT	4 cut(s)	44, 48, 111, 236
HpyCH4V	TGCA	1 cut(s)	208
HpySE526I	ACGT	4 cut(s)	44, 48, 111, 236
Hsp92I	GRCGYC	2 cut(s)	156, 236
Kzo9I	GATC	2 cut(s)	171, 177
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	82, 86, 147, 172, 184
LweI	GCATC	1 cut(s)	66
MaeII	ACGT	4 cut(s)	44, 48, 111, 236
MalI	GATC	2 cut(s)	173, 179
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	2 cut(s)	171, 177
MboII	GAAGA	6 cut(s)	136, 254, 257, 269, 272, 275
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	7 cut(s)	34, 70, 113, 205, 279, 282, 285
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	222, 304
MspI	CCGG	2 cut(s)	134, 159
MvnI	CGCG	1 cut(s)	176
NdeII	GATC	2 cut(s)	171, 177
NmeAIII	GCCGAG	1 cut(s)	84
NruI	TCGCGA	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	143
Pfl23II	CGTACG	1 cut(s)	45
PkrI	GCNGC	5 cut(s)	7, 10, 132, 228, 291
Ple19I	CGATCG	1 cut(s)	174
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PspLI	CGTACG	1 cut(s)	45
PspXI	VCTCGAGB	1 cut(s)	184
PvuI	CGATCG	1 cut(s)	174
RruI	TCGCGA	1 cut(s)	176
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	222, 304
SatI	GCNGC	5 cut(s)	6, 9, 131, 227, 290
Sau3AI	GATC	2 cut(s)	171, 177
SchI	GAGTC	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	7 cut(s)	26, 47, 51, 114, 185, 191, 239
SfaNI	GCATC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	5 cut(s)	6, 9, 131, 227, 289
TaiI	ACGT	4 cut(s)	47, 51, 114, 239
TaqI	TCGA	3 cut(s)	114, 185, 300
TasI	AATT	1 cut(s)	218
TauI	GCSGC	5 cut(s)	8, 11, 133, 229, 292
Tru1I	TTAA	2 cut(s)	222, 304
Tru9I	TTAA	2 cut(s)	222, 304
VneI	GTGCAC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	143
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.