Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Forward (+)

45392673 .. 45403923

Gene Structure 11251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG405800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGAAGGATCGTGGCGGCGGTGTTGAGGCCCTGGTTATTTGGGCTGGTGAAAGCCATGGCGGCAGGGAAAGGATGGAACGTTTTATCCACGATGGTGACCAGATCTCCTCGTCTGGGTCGCCTCCTACAAGGATTGGGATCGATGTTTTGACGTCTATGTGGCTGCAATTGTACTTCCCCGAGGGTGCTGAGGGTGCATGGCTTTGGTATGACAGCGAAGCCGTCGCGTTAACTAGGCGGCAGAGATCGGAATTTGTTGATGAAGATGCACTGCTCGTTTGCGGCGGAGCAAATAGAACCATTGGACTACCGTTGGGCGAGATGTACAACGAGGCTGTGATGGTCCTTCACGACCCAGAAGACACCGGCAGTCCGGCGAAGGAGGATTCGTGGTGCCCAGCGTTGGGTGTCCTCATCAAACTGGGTCCTCATGGAAAAAGTTTAAGCTTACTGTTATCCTCTGTCAGTCCTCTCTCACAGCAGATTTGGGATTTGGATCTCTCTCACTCTGACAAAAGGCTGATTGGAGTTGGGTTATCTATTTGGACATTTGCCACAGTTGGGTGTGGTAGTTCATTTAATTTCTGGTCCATTGCAATATGTCGCATGCTGGTTGGAGTCGGTGAGGCATCTTTCATAAGTCTTGCAGCTCCGTTCATTGATGACCATGCACCTGCAGATCAGAAATCAGCATGGCTGGCAATATTTTACATGTGTATACTGACTGGAGTTGCTATAGGCTATGTTTCCAGCGGATTTGTAAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

257

Amino Acids

27.83

Weight (kDa)

4.71

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	170 - 255	1.5e-10	Major Facilitator Superfamily
OATP	PF03137	197 - 254	3.8e-08	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	685
AatII	GACGTC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	685
AccB1I	GGYRCC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	721
AccII	CGCG	1 cut(s)	230
AciI	CCGC	7 cut(s)	18, 21, 63, 241, 285, 288, 756
AclI	AACGTT	1 cut(s)	82
AclWI	GGATC	3 cut(s)	18, 149, 507
AcsI	RAATTY	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	176, 329
AfiI	CCNNNNNNNGG	4 cut(s)	117, 406, 407, 564
AflIII	ACRYGT	1 cut(s)	714
AjnI	CCWGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	96
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	2 cut(s)	450, 653
AluI	AGCT	2 cut(s)	450, 653
AlwI	GGATC	3 cut(s)	18, 149, 507
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	166, 650
ApoI	RAATTY	1 cut(s)	254
AspS9I	GGNCC	4 cut(s)	31, 346, 428, 591
AsuHPI	GGTGA	3 cut(s)	62, 110, 638
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	3 cut(s)	346, 428, 591
BaeGI	GKGCMC	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	369
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	153, 662
BccI	CCATC	3 cut(s)	70, 89, 337
BceAI	ACGGC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	35
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	2 cut(s)	678, 738
BfuAI	ACCTGC	1 cut(s)	685
BglI	GCCNNNNNGGC	1 cut(s)	63
BglII	AGATCT	1 cut(s)	105
BisI	GCNGC	6 cut(s)	19, 64, 167, 242, 286, 651
BlsI	GCNGC	6 cut(s)	20, 65, 168, 243, 287, 652
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	3 cut(s)	346, 428, 591
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	4 cut(s)	31, 346, 428, 591
BmiI	GGNNCC	2 cut(s)	398, 429
BmrFI	CCNGG	1 cut(s)	35
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	259, 641
BmuI	ACTGGG	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	144
BsaBI	GATNNNNATC	2 cut(s)	140, 498
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	33, 58, 183
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 377, 407
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 406, 407, 564
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	429, 733
Bse3DI	GCAATG	1 cut(s)	594
Bse8I	GATNNNNATC	2 cut(s)	140, 498
BseBI	CCWGG	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	33, 58, 183
BseGI	GGATG	1 cut(s)	81
BseJI	GATNNNNATC	2 cut(s)	140, 498
BseLI	CCNNNNNNNGG	4 cut(s)	117, 406, 407, 564
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	429, 733
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	153, 662
BseYI	CCCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	396
BshVI	ATCGAT	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	369, 377
BslI	CCNNNNNNNGG	4 cut(s)	117, 406, 407, 564
BsnI	GGCC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	6 cut(s)	10, 105, 141, 248, 499, 682
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	7 cut(s)	18, 21, 63, 241, 285, 288, 756
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	184
BspDI	ATCGAT	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	2 cut(s)	398, 429
BspMAI	CTGCAG	1 cut(s)	682
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	3 cut(s)	18, 149, 507
BspT107I	GGYRCC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	594
BsrFI	RCCGGY	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	429, 733
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	3 cut(s)	33, 58, 183
BssMI	GATC	6 cut(s)	10, 105, 141, 248, 499, 682
BssNAI	GTATAC	1 cut(s)	722
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	58
Bst1107I	GTATAC	1 cut(s)	722
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	3 cut(s)	315, 456, 562
BstACI	GRCGYC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	611, 702
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	58
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	6 cut(s)	13, 108, 144, 251, 502, 685
BstMBI	GATC	6 cut(s)	10, 105, 141, 248, 499, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 197, 701
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	2 cut(s)	613, 718
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	2 cut(s)	678, 738
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	153, 662
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	2 cut(s)	105, 499
BstYI	RGATCY	2 cut(s)	105, 499
BstZ17I	GTATAC	1 cut(s)	722
Bsu15I	ATCGAT	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	272
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	2 cut(s)	611, 702
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	4 cut(s)	31, 346, 428, 591
ClaI	ATCGAT	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	175, 328
CviAII	CATG	7 cut(s)	59, 201, 434, 610, 671, 696, 715
CviQI	GTAC	2 cut(s)	175, 328
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	6 cut(s)	12, 107, 143, 250, 501, 684
DpnII	GATC	6 cut(s)	10, 105, 141, 248, 499, 682
EciI	GGCGGA	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	58
Eco47I	GGWCC	3 cut(s)	346, 428, 591
Eco88I	CYCGRG	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	98
EcoO109I	RGGNCCY	2 cut(s)	31, 428
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	7 cut(s)	62, 204, 437, 613, 674, 699, 718
FatI	CATG	7 cut(s)	58, 200, 433, 609, 670, 695, 714
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	6 cut(s)	19, 64, 167, 242, 286, 651
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	6 cut(s)	19, 64, 167, 242, 286, 651
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	6 cut(s)	19, 64, 167, 242, 286, 651
GsaI	CCCAGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	2 cut(s)	369, 377
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	7 cut(s)	62, 204, 437, 613, 674, 699, 718
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	2 cut(s)	389, 621
HpaI	GTTAAC	1 cut(s)	234
HpaII	CCGG	2 cut(s)	369, 377
HphI	GGTGA	3 cut(s)	62, 110, 638
Hpy166II	GTNNAC	2 cut(s)	234, 722
Hpy188I	TCNGA	3 cut(s)	253, 514, 687
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	234, 722
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	359, 376
HpyCH4III	ACNGT	3 cut(s)	315, 456, 562
HpyCH4IV	ACGT	2 cut(s)	82, 155
HpyCH4V	TGCA	7 cut(s)	169, 200, 272, 599, 650, 674, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 197, 701
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	82, 155
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	7 cut(s)	62, 204, 437, 613, 674, 699, 718
KspAI	GTTAAC	1 cut(s)	234
Kzo9I	GATC	6 cut(s)	10, 105, 141, 248, 499, 682
LmnI	GCTCC	2 cut(s)	290, 658
Lsp1109I	GCAGC	2 cut(s)	153, 662
LweI	GCATC	2 cut(s)	259, 641
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	2 cut(s)	82, 155
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	6 cut(s)	12, 107, 143, 250, 501, 684
MboI	GATC	6 cut(s)	10, 105, 141, 248, 499, 682
MboII	GAAGA	2 cut(s)	278, 374
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	2 cut(s)	105, 499
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	3 cut(s)	170, 254, 583
MlyI	GAGTC	1 cut(s)	630
MmeI	TCCRAC	1 cut(s)	598
MseI	TTAA	3 cut(s)	233, 446, 582
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	756
MspI	CCGG	2 cut(s)	369, 377
MspR9I	CCNGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	63, 197, 701
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	6 cut(s)	10, 105, 141, 248, 499, 682
NlaIII	CATG	7 cut(s)	62, 204, 437, 613, 674, 699, 718
NlaIV	GGNNCC	2 cut(s)	398, 429
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	2 cut(s)	613, 718
OliI	CACNNNNGTG	1 cut(s)	96
PaeI	GCATGC	1 cut(s)	613
PaqCI	CACCTGC	1 cut(s)	685
PciI	ACATGT	1 cut(s)	714
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	6 cut(s)	20, 65, 168, 243, 287, 652
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
PpuMI	RGGWCCY	1 cut(s)	428
PscI	ACATGT	1 cut(s)	714
Psp1406I	AACGTT	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	33
PspEI	GGTNACC	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	398, 429
PspPI	GGNCC	4 cut(s)	31, 346, 428, 591
PspPPI	RGGWCCY	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	2 cut(s)	105, 499
RsaI	GTAC	2 cut(s)	176, 329
RsaNI	GTAC	2 cut(s)	175, 328
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	233, 446, 582
SatI	GCNGC	6 cut(s)	19, 64, 167, 242, 286, 651
Sau3AI	GATC	6 cut(s)	10, 105, 141, 248, 499, 682
Sau96I	GGNCC	4 cut(s)	31, 346, 428, 591
SchI	GAGTC	1 cut(s)	630
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	5 cut(s)	85, 158, 452, 655, 679
SfaNI	GCATC	2 cut(s)	259, 641
SfcI	CTRYAG	2 cut(s)	678, 738
SinI	GGWCC	3 cut(s)	346, 428, 591
SmiMI	CAYNNNNRTG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	613
Sse9I	AATT	3 cut(s)	170, 254, 583
SsiI	CCGC	7 cut(s)	18, 21, 63, 241, 285, 288, 756
SspI	AATATT	1 cut(s)	708
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	315, 456, 562
TaiI	ACGT	2 cut(s)	85, 158
TaqI	TCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	170, 254, 583
TatI	WGTACW	2 cut(s)	174, 327
TauI	GCSGC	4 cut(s)	21, 66, 244, 288
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	3 cut(s)	233, 446, 582
Tru9I	TTAA	3 cut(s)	233, 446, 582
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	166, 650
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	4 cut(s)	279, 567, 628, 649
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	3 cut(s)	346, 428, 591
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	2 cut(s)	613, 718
XmiI	GTMKAC	1 cut(s)	721
XspI	CTAG	1 cut(s)	237
ZraI	GACGTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.