Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Forward (+)

48402535 .. 48409956

Gene Structure 7422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCGCATAGCGGCTCTGACCGATTTCAAGTATCAGGGCTCCTCTGCCCTTCCATAGATCTGTTTTCGCCGAATCTAACTCCTACTATGGCGAAGGATCGTGGAGGCGGTGTTGCGGCCCTGGTTATTTGGGCTGGCGAAAGCTATGGCGGCAGGAAAAGGATGGAACGTTTCATCCACCATGGTGACCAGATCTCCTCGTCTGGGTCGCCTCCTACAAGGATTAGGATCGATGTTTTGACGTCTATGTGGCTGCAATTGTACTTCCCCGAGGGTGCTGAGGGCGCATGGCTTTGGTATGCCAGCGAAGCCGTCGCGTTAACTAGGCGGCAGAGATCGGATTTTGCTGATGAAGATGCACTGCTCGTTTGCGGCGGAGCAAATAGAACCATTGGACTACCGTTGGGCGAGATGTACAACGAGGCTGTGATGGTCCTTCACAACCCAGAAGACACCGGCAGTCCGGCGACGGAGGATTCGGGGTGCCCAACATTGGGTGTCCTCATCAAACTGGGTCCTTATGTTTCTATGCAGGGACTGCTGCGAGCTGGTGGAGGATGCAATCTTGAGGCGGATCTGGCGACGGTATGGCCTATGAGGCTCGGGTCTAGGCGACAGTGTGGCTTACGGGTCTCCGACCTTGATGATGCACGACACTGGCTGGGGGAATCAGAGCAGTGCTGGCTTCTGGAGGAGTTCGACGGAACGGATCGTGGTGAGGTGAGTCTTAGGGTGAGACTCATGGCCGGGTTTGATCTGTCGTTGAGGGATGGGATCGACGTTGGGTGGATCGACGATGCGGCAATGGGACAGGTGGCGGTGCTACCACGAGTAGGTGGAGGGATAGAGAGGGGCGGTGTTTGGGCAGGTTTCCTCTCGGGTCTGGATCCCCAATCTGGATCTAGGCGAGATCTTGGGCTGAGAGTGAAGAATGGAGGCCGACTGCACTTGCGCTCTGGGCTCGGGCTTTGTTGCTTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

35.23

Weight (kDa)

5.33

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	857
AccB1I	GGYRCC	1 cut(s)	483
AccII	CGCG	1 cut(s)	317
AclI	AACGTT	1 cut(s)	169
AclWI	GGATC	9 cut(s)	105, 236, 582, 717, 782, 797, 881, 894, 907
AcoI	YGGCCR	1 cut(s)	744
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	2 cut(s)	263, 416
AfiI	CCNNNNNNNGG	5 cut(s)	204, 493, 494, 833, 896
AgsI	TTSAA	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	120
AleI	CACNNNNGTG	1 cut(s)	183
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	2 cut(s)	144, 548
AluI	AGCT	2 cut(s)	144, 548
Alw26I	GTCTC	2 cut(s)	637, 730
AlwI	GGATC	9 cut(s)	105, 236, 582, 717, 782, 797, 881, 894, 907
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	4 cut(s)	269, 602, 877, 962
AoxI	GGCC	4 cut(s)	117, 590, 744, 937
ApeKI	GCWGC	2 cut(s)	253, 541
ArsI	GACNNNNNNTTYG	2 cut(s)	460, 492
AspLEI	GCGC	3 cut(s)	7, 287, 954
AspS9I	GGNCC	3 cut(s)	118, 433, 515
AsuC2I	CCSGG	1 cut(s)	748
AsuHPI	GGTGA	4 cut(s)	197, 728, 733, 745
AvaI	CYCGRG	4 cut(s)	269, 602, 877, 962
AvaII	GGWCC	2 cut(s)	433, 515
BaeGI	GKGCMC	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	886
BanI	GGYRCC	1 cut(s)	483
BanII	GRGCYC	2 cut(s)	42, 963
BauI	CACGAG	1 cut(s)	828
BbsI	GAAGAC	1 cut(s)	456
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	240, 528
BccI	CCATC	3 cut(s)	157, 424, 764
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	748
BcoDI	GTCTC	2 cut(s)	637, 730
BfaI	CTAG	4 cut(s)	324, 609, 903, 982
BfuAI	ACCTGC	1 cut(s)	857
BglI	GCCNNNNNGGC	1 cut(s)	598
BglII	AGATCT	3 cut(s)	58, 192, 910
BisI	GCNGC	8 cut(s)	13, 117, 151, 254, 329, 373, 542, 801
BlsI	GCNGC	8 cut(s)	14, 118, 152, 255, 330, 374, 543, 802
Bme1390I	CCNGG	2 cut(s)	122, 748
Bme18I	GGWCC	2 cut(s)	433, 515
BmeT110I	CYCGRG	4 cut(s)	269, 602, 877, 962
BmgT120I	GGNCC	3 cut(s)	118, 433, 515
BmiI	GGNNCC	4 cut(s)	41, 485, 516, 888
BmrFI	CCNGG	2 cut(s)	122, 748
BmrI	ACTGGG	1 cut(s)	521
BmsI	GCATC	4 cut(s)	346, 548, 637, 787
BmuI	ACTGGG	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	710
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	748
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	637
BsaJI	CCNNGG	3 cut(s)	120, 181, 270
BsaXI	ACNNNNNCTCC	4 cut(s)	96, 126, 179, 209
Bsc4I	CCNNNNNNNGG	5 cut(s)	204, 493, 494, 833, 896
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	516, 662
Bse3DI	GCAATG	1 cut(s)	810
Bse8I	GATNNNNATC	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	120, 181, 270
BseGI	GGATG	4 cut(s)	168, 174, 563, 775
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	5 cut(s)	204, 493, 494, 833, 896
BseMI	GCAATG	1 cut(s)	810
BseMII	CTCAG	2 cut(s)	270, 911
BseNI	ACTGG	2 cut(s)	516, 662
BseRI	GAGGAG	3 cut(s)	32, 187, 707
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	2 cut(s)	240, 528
BseYI	CCCAGC	1 cut(s)	661
BsgI	GTGCAG	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	4 cut(s)	119, 592, 746, 939
BshNI	GGYRCC	1 cut(s)	483
BshVI	ATCGAT	1 cut(s)	231
BsiHKCI	CYCGRG	4 cut(s)	269, 602, 877, 962
BsiSI	CCGG	3 cut(s)	456, 464, 747
BslFI	GGGAC	2 cut(s)	549, 822
BslI	CCNNNNNNNGG	5 cut(s)	204, 493, 494, 833, 896
BsmAI	GTCTC	2 cut(s)	637, 730
BsmFI	GGGAC	2 cut(s)	549, 822
BsnI	GGCC	4 cut(s)	119, 592, 746, 939
Bso31I	GGTCTC	1 cut(s)	637
BsoBI	CYCGRG	4 cut(s)	269, 602, 877, 962
Bsp1286I	GDGCHC	3 cut(s)	42, 488, 963
Bsp1407I	TGTACA	1 cut(s)	414
Bsp19I	CCATGG	1 cut(s)	181
BspANI	GGCC	4 cut(s)	119, 592, 746, 939
BspCNI	CTCAG	2 cut(s)	271, 912
BspDI	ATCGAT	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	4 cut(s)	41, 485, 516, 888
BspMI	ACCTGC	1 cut(s)	857
BspPI	GGATC	9 cut(s)	105, 236, 582, 717, 782, 797, 881, 894, 907
BspT107I	GGYRCC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	810
BsrFI	RCCGGY	1 cut(s)	455
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	516, 662
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	120, 181, 270
BssNI	GRCGYC	1 cut(s)	242
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	181
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	3 cut(s)	402, 586, 618
BstACI	GRCGYC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	4 cut(s)	136, 304, 546, 683
BstDEI	CTNAG	3 cut(s)	279, 728, 920
BstDSI	CCRYGG	1 cut(s)	181
BstEII	GGTNACC	1 cut(s)	185
BstF5I	GGATG	4 cut(s)	168, 174, 563, 775
BstFNI	CGCG	1 cut(s)	317
BstHHI	GCGC	3 cut(s)	7, 287, 954
BstMAI	GTCTC	2 cut(s)	637, 730
BstMWI	GCNNNNNNNGC	8 cut(s)	150, 284, 308, 538, 578, 598, 682, 958
BstNI	CCWGG	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	120, 746
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	240, 528
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	6 cut(s)	58, 192, 574, 886, 899, 910
BstYI	RGATCY	6 cut(s)	58, 192, 574, 886, 899, 910
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	119, 592, 746, 939
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	4 cut(s)	168, 174, 563, 775
BtsI	GCAGTG	2 cut(s)	359, 683
BtsIMutI	CAGTG	4 cut(s)	359, 623, 655, 683
BveI	ACCTGC	1 cut(s)	857
Cac8I	GCNNGC	4 cut(s)	136, 304, 546, 683
CaiI	CAGNNNCTG	1 cut(s)	538
CfoI	GCGC	3 cut(s)	7, 287, 954
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	3 cut(s)	118, 433, 515
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	262, 415
CviAII	CATG	3 cut(s)	182, 288, 742
CviQI	GTAC	2 cut(s)	262, 415
DdeI	CTNAG	3 cut(s)	279, 728, 920
EaeI	YGGCCR	1 cut(s)	744
EciI	GGCGGA	2 cut(s)	390, 587
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	2 cut(s)	42, 963
Eco31I	GGTCTC	1 cut(s)	637
Eco47I	GGWCC	2 cut(s)	433, 515
Eco88I	CYCGRG	4 cut(s)	269, 602, 877, 962
Eco91I	GGTNACC	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	2 cut(s)	42, 963
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	185, 291, 745
FaqI	GGGAC	2 cut(s)	549, 822
FatI	CATG	3 cut(s)	181, 287, 741
Fnu4HI	GCNGC	8 cut(s)	13, 117, 151, 254, 329, 373, 542, 801
FokI	GGATG	4 cut(s)	161, 175, 570, 782
FriOI	GRGCYC	2 cut(s)	42, 963
Fsp4HI	GCNGC	8 cut(s)	13, 117, 151, 254, 329, 373, 542, 801
FspBI	CTAG	4 cut(s)	324, 609, 903, 982
GlaI	GCGC	3 cut(s)	6, 286, 953
GluI	GCNGC	8 cut(s)	13, 117, 151, 254, 329, 373, 542, 801
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	1 cut(s)	710
HaeIII	GGCC	4 cut(s)	119, 592, 746, 939
HapII	CCGG	3 cut(s)	456, 464, 747
HhaI	GCGC	3 cut(s)	7, 287, 954
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	185, 291, 745
Hin6I	GCGC	3 cut(s)	5, 285, 952
HinP1I	GCGC	3 cut(s)	5, 285, 952
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	5 cut(s)	73, 476, 668, 724, 738
HpaI	GTTAAC	1 cut(s)	321
HpaII	CCGG	3 cut(s)	456, 464, 747
HphI	GGTGA	4 cut(s)	197, 728, 733, 745
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	4 cut(s)	19, 340, 637, 673
Hpy188III	TCNNGA	4 cut(s)	566, 689, 884, 897
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	6 cut(s)	317, 472, 586, 704, 782, 797
HpyAV	CCTTC	3 cut(s)	60, 88, 446
HpyCH4III	ACNGT	3 cut(s)	402, 586, 618
HpyCH4IV	ACGT	3 cut(s)	169, 242, 780
HpyCH4V	TGCA	6 cut(s)	256, 359, 532, 561, 650, 946
HpyF10VI	GCNNNNNNNGC	8 cut(s)	150, 284, 308, 538, 578, 598, 682, 958
HpyF3I	CTNAG	3 cut(s)	279, 728, 920
HpySE526I	ACGT	3 cut(s)	169, 242, 780
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	185, 291, 745
HspAI	GCGC	3 cut(s)	5, 285, 952
KspAI	GTTAAC	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	45, 377
Lsp1109I	GCAGC	2 cut(s)	240, 528
LweI	GCATC	4 cut(s)	346, 548, 637, 787
MaeI	CTAG	4 cut(s)	324, 609, 903, 982
MaeII	ACGT	3 cut(s)	169, 242, 780
MaeIII	GTNAC	1 cut(s)	185
MboII	GAAGA	3 cut(s)	365, 461, 940
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	6 cut(s)	58, 192, 574, 886, 899, 910
MhlI	GDGCHC	3 cut(s)	42, 488, 963
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	732, 733
MmeI	TCCRAC	1 cut(s)	660
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	3 cut(s)	456, 464, 747
MspR9I	CCNGG	2 cut(s)	122, 748
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	8 cut(s)	150, 284, 308, 538, 578, 598, 682, 958
NciI	CCSGG	1 cut(s)	748
NcoI	CCATGG	1 cut(s)	181
NlaIII	CATG	3 cut(s)	185, 291, 745
NlaIV	GGNNCC	4 cut(s)	41, 485, 516, 888
NmuCI	GTSAC	1 cut(s)	185
OliI	CACNNNNGTG	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	73, 476, 668
PkrI	GCNGC	8 cut(s)	14, 118, 152, 255, 330, 374, 543, 802
PleI	GAGTC	2 cut(s)	732, 732
PpsI	GAGTC	2 cut(s)	732, 732
PpuMI	RGGWCCY	1 cut(s)	515
Psp1406I	AACGTT	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	4 cut(s)	41, 485, 516, 888
PspPI	GGNCC	3 cut(s)	118, 433, 515
PspPPI	RGGWCCY	1 cut(s)	515
PstNI	CAGNNNCTG	1 cut(s)	538
PsuI	RGATCY	6 cut(s)	58, 192, 574, 886, 899, 910
RsaI	GTAC	2 cut(s)	263, 416
RsaNI	GTAC	2 cut(s)	262, 415
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	8 cut(s)	13, 117, 151, 254, 329, 373, 542, 801
Sau96I	GGNCC	3 cut(s)	118, 433, 515
SchI	GAGTC	2 cut(s)	732, 733
ScrFI	CCNGG	2 cut(s)	122, 748
SduI	GDGCHC	3 cut(s)	42, 488, 963
SfaNI	GCATC	4 cut(s)	346, 548, 637, 787
SinI	GGWCC	2 cut(s)	433, 515
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	1 cut(s)	257
SspMI	CTAG	4 cut(s)	324, 609, 903, 982
StyD4I	CCNGG	2 cut(s)	120, 746
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	3 cut(s)	402, 586, 618
TaiI	ACGT	3 cut(s)	172, 245, 783
TaqI	TCGA	4 cut(s)	231, 699, 777, 792
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	257
TatI	WGTACW	2 cut(s)	261, 414
TauI	GCSGC	6 cut(s)	15, 119, 153, 331, 375, 803
TfiI	GAWTC	3 cut(s)	73, 476, 668
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	4 cut(s)	366, 623, 662, 683
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	253, 541
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	163, 366
TspGWI	ACGGA	3 cut(s)	485, 717, 722
TspRI	CASTG	4 cut(s)	366, 623, 662, 683
VpaK11BI	GGWCC	2 cut(s)	433, 515
XspI	CTAG	4 cut(s)	324, 609, 903, 982
ZraI	GACGTC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.