Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Reverse (-)

36047329 .. 36050357

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATTGAGGATTTTGAATTGAACAACTTTCAAGATGGTGTTCTATCATCTATGTTTATGGTTGGGCTTCTCGTGGTCTCACCCATCTTTTCATTCTTGGCAAAGAGCGACAATCCTTTTAGGCTGATTGGAGTTGGGTTATCTATTTGGACATTTGCCACAGCTGGGTGTGGTAGTTCATTTAATTTCTGGTCCATTGCAATATGTCGCATGCTGGTTGGAGTCGGTGAGGCATCTTTCATAAGTCTTGCAGCTCCGTTCATTGATGACCATGCACCTGCAGATCAGAAATCAGCATGGCTGGCAATATTTTATATGTGTATACCGACTGGAGTTGCTATAGGCTATGTTTCCAGCGGATTTGCGTTGTTTCCCGGTATATGGTTGACGAGAGGTCTCACTGATTCGTTAAAGATTCCCGAATTCCCCGAAAATGTCAAGTTGTCACCCAAGCATTCAAGGTTATTTGAGCTGCCGATTGGCTATGACCGTGACTATGCCGAATACCACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

171

Amino Acids

18.9

Weight (kDa)

5.04

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	2 - 123	4.9e-14	Major Facilitator Superfamily
OATP	PF03137	63 - 123	7.3e-08	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	422
AfiI	CCNNNNNNNGG	2 cut(s)	165, 381
AgsI	TTSAA	4 cut(s)	17, 22, 32, 459
AhdI	GACNNNNNGTC	1 cut(s)	393
AluBI	AGCT	3 cut(s)	164, 254, 472
AluI	AGCT	3 cut(s)	164, 254, 472
Alw26I	GTCTC	2 cut(s)	82, 401
ApeKI	GCWGC	2 cut(s)	251, 472
ApoI	RAATTY	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	3 cut(s)	72, 239, 438
AvaII	GGWCC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	263, 459
BccI	CCATC	2 cut(s)	29, 92
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	82, 401
BfmI	CTRYAG	2 cut(s)	279, 339
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	2 cut(s)	252, 473
BlsI	GCNGC	2 cut(s)	253, 474
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	192
BmeRI	GACNNNNNGTC	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	375
BsaI	GGTCTC	2 cut(s)	82, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 381
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	165, 381
BseMI	GCAATG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	263, 459
BseYI	CCCAGC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	165, 381
BsmAI	GTCTC	2 cut(s)	82, 401
BsmI	GAATGC	1 cut(s)	454
Bso31I	GGTCTC	2 cut(s)	82, 401
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	286
BspTNI	GGTCTC	2 cut(s)	82, 401
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	283
BssNAI	GTATAC	1 cut(s)	323
BssSI	CACGAG	1 cut(s)	71
Bst1107I	GTATAC	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	212, 303
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	2 cut(s)	82, 401
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	2 cut(s)	279, 339
BstV1I	GCAGC	2 cut(s)	263, 459
BstZ17I	GTATAC	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	212, 303
Cfr13I	GGNCC	1 cut(s)	192
CviAII	CATG	3 cut(s)	211, 272, 297
CviJI	RGCY	8 cut(s)	67, 124, 164, 254, 301, 345, 472, 483
CviKI_1	RGCY	8 cut(s)	67, 124, 164, 254, 301, 345, 472, 483
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
DriI	GACNNNNNGTC	1 cut(s)	393
Eam1105I	GACNNNNNGTC	1 cut(s)	393
Eco31I	GGTCTC	2 cut(s)	82, 401
Eco47I	GGWCC	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	422
FaeI	CATG	3 cut(s)	214, 275, 300
FatI	CATG	3 cut(s)	210, 271, 296
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	252, 473
Fsp4HI	GCNGC	2 cut(s)	252, 473
GluI	GCNGC	2 cut(s)	252, 473
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	351
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	3 cut(s)	214, 275, 300
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	3 cut(s)	222, 404, 415
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	3 cut(s)	72, 239, 438
Hpy166II	GTNNAC	2 cut(s)	323, 387
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	2 cut(s)	32, 419
Hpy8I	GTNNAC	2 cut(s)	323, 387
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	4 cut(s)	200, 251, 275, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	214, 275, 300
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	9 cut(s)	150, 175, 200, 287, 291, 315, 367, 388, 496
Lsp1109I	GCAGC	2 cut(s)	263, 459
LweI	GCATC	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	444, 491
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MluCI	AATT	3 cut(s)	17, 184, 422
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	2 cut(s)	223, 386
MseI	TTAA	2 cut(s)	183, 410
MspA1I	CMGCKG	2 cut(s)	164, 357
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	454
MwoI	GCNNNNNNNGC	1 cut(s)	302
NciI	CCSGG	1 cut(s)	375
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	214, 275, 300
NmuCI	GTSAC	2 cut(s)	444, 491
NspI	RCATGY	1 cut(s)	214
PaeI	GCATGC	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	286
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	404, 415
PkrI	GCNGC	2 cut(s)	253, 474
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	183, 410
SatI	GCNGC	2 cut(s)	252, 473
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	375
SetI	ASST	7 cut(s)	166, 256, 280, 397, 464, 474, 515
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	2 cut(s)	279, 339
SinI	GGWCC	1 cut(s)	192
SphI	GCATGC	1 cut(s)	214
Sse9I	AATT	3 cut(s)	17, 184, 422
SsiI	CCGC	1 cut(s)	357
SspI	AATATT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	491
TasI	AATT	3 cut(s)	17, 184, 422
TfiI	GAWTC	2 cut(s)	404, 415
Tru1I	TTAA	2 cut(s)	183, 410
Tru9I	TTAA	2 cut(s)	183, 410
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	2 cut(s)	444, 491
TseI	GCWGC	2 cut(s)	251, 472
Tsp45I	GTSAC	2 cut(s)	444, 491
TspDTI	ATGAA	4 cut(s)	81, 168, 229, 250
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.