Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Forward (+)

14170611 .. 14184034

Gene Structure 13424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG162700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGTACAAATATCTGTAGCAAAGCAATTGTTATTCCATTACTGGAGTTGATGATGCTGAAGAATTTCGTGTGGTCAAGCCCGGAGGAGCTTACACTTGCTTTATCAATTAAGAGATTGGACATTAACATCCTTGTGATCATTCTCATTGGTCTGCAATCTCAACTCCAAAGTCGGAACTGGTTCTCCCCCGAAAGCCACAATCCTTTTAGGCTGATTGGAGTTGGGTTATCTATTTGGACATTTGTCACAGCTGGGTGTGGTAGTTCATTTAATTTATGGTCCATTGCAATATGTCGCATGCTGGTTGGAGTCGGTGAGGCATCTTTCATAAGTCTTGCAGCTCCGTTCATTGATGACCATGCCCCTGCAGATCAGAAATCAGCATGGCTGGCAATATTTTACATGTGTATACCGACTGGAGTTGCTATAGGCTATGTTCTGGCGGATTTGTCAGTTTTAGATGTGCTGAAAGGTTCACCTCCTACTGAATCGACAGAGCTTTTGGAATCTATTGAAACTAGTCCTTTAATAGCAGAATCAGATATCCCAAATATAAATGGTTGTGTGACAATTGACTGCGATGTGACTTCTTGTGAGCTCAGTTCAACGATCAAAGCAAGATTTCACAAAGGAAGCCGAAAATCCACAGATTCTACCATGGGAGAGCTAGAGATGGAGGCTGGAGCACTCAAACTGAGAGAATGTGCACCCATTTTCTTGGAATCCGCAAAAGGCCTGAACTACGTTCATGAAGACATTAAGAAGGCACATATATTCTTCAGCAATGGCCTGCTGAAAATTGGAGATTTTGGCCTTGGTGAGTTCACTTTTGGTTTTACATTGAATAGAACTAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

287

Amino Acids

31.32

Weight (kDa)

5.18

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	69 - 149	6.1e-09	Major Facilitator Superfamily
OATP	PF03137	94 - 151	6.2e-08	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	412
AciI	CCGC	2 cut(s)	446, 729
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	2 cut(s)	80, 766
AfaI	GTAC	1 cut(s)	7
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	518, 609, 847
AhlI	ACTAGT	1 cut(s)	521
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
AluBI	AGCT	6 cut(s)	91, 254, 344, 502, 601, 670
AluI	AGCT	6 cut(s)	91, 254, 344, 502, 601, 670
Alw21I	GWGCWC	3 cut(s)	603, 691, 712
Alw44I	GTGCAC	1 cut(s)	708
AoxI	GGCC	3 cut(s)	736, 790, 814
ApaLI	GTGCAC	1 cut(s)	708
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	487, 519
Asp700I	GAANNNNTTC	2 cut(s)	65, 182
AspS9I	GGNCC	1 cut(s)	282
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	3 cut(s)	329, 471, 833
AvaII	GGWCC	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	3 cut(s)	603, 691, 712
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	1 cut(s)	670
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	83
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	2 cut(s)	522, 671
BfmI	CTRYAG	3 cut(s)	16, 369, 429
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	45, 332
BoxI	GACNNNNGTC	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	762
BpmI	CTGGAG	3 cut(s)	65, 441, 705
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	660, 817
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bse1I	ACTGG	3 cut(s)	48, 185, 424
Bse3DI	GCAATG	2 cut(s)	285, 793
BseDI	CCNNGG	2 cut(s)	660, 817
BseGI	GGATG	1 cut(s)	129
BseMI	GCAATG	2 cut(s)	285, 793
BseMII	CTCAG	2 cut(s)	616, 689
BseNI	ACTGG	3 cut(s)	48, 185, 424
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	1 cut(s)	353
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	3 cut(s)	738, 792, 816
BsiHKAI	GWGCWC	3 cut(s)	603, 691, 712
BsiSI	CCGG	1 cut(s)	83
BsnI	GGCC	3 cut(s)	738, 792, 816
Bsp1286I	GDGCHC	3 cut(s)	603, 691, 712
Bsp143I	GATC	3 cut(s)	138, 373, 612
Bsp19I	CCATGG	1 cut(s)	660
BspACI	CCGC	2 cut(s)	446, 729
BspANI	GGCC	3 cut(s)	738, 792, 816
BspCNI	CTCAG	2 cut(s)	615, 690
BspHI	TCATGA	1 cut(s)	751
BspMAI	CTGCAG	1 cut(s)	373
BsrDI	GCAATG	2 cut(s)	285, 793
BsrI	ACTGG	3 cut(s)	48, 185, 424
BssECI	CCNNGG	2 cut(s)	660, 817
BssMI	GATC	3 cut(s)	138, 373, 612
BssNAI	GTATAC	1 cut(s)	413
BssT1I	CCWWGG	2 cut(s)	660, 817
Bst1107I	GTATAC	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	302, 393, 794
BstDEI	CTNAG	3 cut(s)	602, 698, 855
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	3 cut(s)	141, 376, 615
BstMBI	GATC	3 cut(s)	138, 373, 612
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNSI	RCATGY	2 cut(s)	304, 409
BstPAI	GACNNNNGTC	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	3 cut(s)	16, 369, 429
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	762
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstZ17I	GTATAC	1 cut(s)	413
BsuRI	GGCC	3 cut(s)	738, 792, 816
BtgI	CCRYGG	1 cut(s)	660
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	129
Cac8I	GCNNGC	3 cut(s)	302, 393, 794
CciI	TCATGA	1 cut(s)	751
Cfr13I	GGNCC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	6 cut(s)	301, 362, 387, 406, 661, 752
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	3 cut(s)	602, 698, 855
DpnI	GATC	3 cut(s)	140, 375, 614
DpnII	GATC	3 cut(s)	138, 373, 612
EciI	GGCGGA	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	601
Eco130I	CCWWGG	2 cut(s)	660, 817
Eco147I	AGGCCT	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	603
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	601
Eco57I	CTGAAG	2 cut(s)	80, 766
EcoICRI	GAGCTC	1 cut(s)	601
EcoRV	GATATC	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	660, 817
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	2 cut(s)	660, 817
FaeI	CATG	6 cut(s)	304, 365, 390, 409, 664, 755
FatI	CATG	6 cut(s)	300, 361, 386, 405, 660, 751
FbaI	TGATCA	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	412
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	2 cut(s)	522, 671
GluI	GCNGC	1 cut(s)	342
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	3 cut(s)	65, 441, 705
HaeIII	GGCC	3 cut(s)	738, 792, 816
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	6 cut(s)	304, 365, 390, 409, 664, 755
HinfI	GANTC	6 cut(s)	312, 491, 509, 539, 653, 725
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	3 cut(s)	329, 471, 833
Hpy166II	GTNNAC	4 cut(s)	413, 479, 710, 828
Hpy188I	TCNGA	3 cut(s)	177, 378, 544
Hpy188III	TCNNGA	1 cut(s)	752
Hpy8I	GTNNAC	4 cut(s)	413, 479, 710, 828
HpyAV	CCTTC	1 cut(s)	760
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	5 cut(s)	157, 290, 341, 371, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	3 cut(s)	602, 698, 855
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	6 cut(s)	304, 365, 390, 409, 664, 755
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	138, 373, 612
LmnI	GCTCC	3 cut(s)	88, 349, 686
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	2 cut(s)	45, 332
MaeI	CTAG	2 cut(s)	522, 671
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	247, 568, 586
MalI	GATC	3 cut(s)	140, 375, 614
MboI	GATC	3 cut(s)	138, 373, 612
MboII	GAAGA	3 cut(s)	73, 767, 772
MfeI	CAATTG	2 cut(s)	27, 573
MhlI	GDGCHC	3 cut(s)	603, 691, 712
MluCI	AATT	6 cut(s)	27, 64, 108, 274, 573, 801
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	2 cut(s)	155, 289
MnlI	CCTC	4 cut(s)	79, 313, 492, 673
MroXI	GAANNNNTTC	2 cut(s)	65, 182
MseI	TTAA	6 cut(s)	111, 126, 273, 530, 762, 862
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	2 cut(s)	27, 573
MwoI	GCNNNNNNNGC	1 cut(s)	392
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	3 cut(s)	138, 373, 612
NlaIII	CATG	6 cut(s)	304, 365, 390, 409, 664, 755
NmuCI	GTSAC	3 cut(s)	247, 568, 586
NspI	RCATGY	2 cut(s)	304, 409
PaeI	GCATGC	1 cut(s)	304
PagI	TCATGA	1 cut(s)	751
PceI	AGGCCT	1 cut(s)	738
PciI	ACATGT	1 cut(s)	405
PdmI	GAANNNNTTC	2 cut(s)	65, 182
PfeI	GAWTC	5 cut(s)	491, 509, 539, 653, 725
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PscI	ACATGT	1 cut(s)	405
PshAI	GACNNNNGTC	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	603
SaqAI	TTAA	6 cut(s)	111, 126, 273, 530, 762, 862
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	3 cut(s)	138, 373, 612
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	3 cut(s)	603, 691, 712
SetI	ASST	9 cut(s)	93, 256, 346, 478, 484, 504, 603, 672, 750
SfaNI	GCATC	2 cut(s)	45, 332
SfcI	CTRYAG	3 cut(s)	16, 369, 429
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	134
SpeI	ACTAGT	1 cut(s)	521
SphI	GCATGC	1 cut(s)	304
Sse9I	AATT	6 cut(s)	27, 64, 108, 274, 573, 801
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	2 cut(s)	446, 729
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	2 cut(s)	522, 671
SstI	GAGCTC	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	660, 817
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	1 cut(s)	494
TasI	AATT	6 cut(s)	27, 64, 108, 274, 573, 801
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	5 cut(s)	491, 509, 539, 653, 725
Tru1I	TTAA	6 cut(s)	111, 126, 273, 530, 762, 862
Tru9I	TTAA	6 cut(s)	111, 126, 273, 530, 762, 862
TseFI	GTSAC	3 cut(s)	247, 568, 586
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	3 cut(s)	247, 568, 586
TspDTI	ATGAA	5 cut(s)	258, 319, 340, 740, 768
TspGWI	ACGGA	1 cut(s)	336
VneI	GTGCAC	1 cut(s)	708
VpaK11BI	GGWCC	1 cut(s)	282
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	2 cut(s)	304, 409
XmiI	GTMKAC	1 cut(s)	412
XmnI	GAANNNNTTC	2 cut(s)	65, 182
XspI	CTAG	2 cut(s)	522, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.