Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001699

Physical Location & Seq

Genomic Coordinates Reverse (-)

17086648 .. 17087672

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007462

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGGGATTTTAAATTGAACAACTTTCAAGATGGTGTTCTATCATTTGTGTTTATGGTTGGGCTTCTCATGGCCTCACCCATCTTTGCATTCTTGGCAAAGAGGCTGATTGGAGTTGGGTTATCTATTTGGACATTTGCCATAGCTGGGTGTGGTAGTTCATTTAATTTCTGGTCCATTGCAATATGTCGCATGCTGGTTGGAGTCAGTGAGGCATCTTTCATAAGTCTTGCAGCTCCGTTCATTGATGACCATGCCCCTGCAGATCAGAAATCAGCATGGCTGGCAATATTTTACATGTGTATACCGACTGGAGTTGCTATAGGCTATGTTTCCAGCGGATTTCCTCTTTCATGGATTTCTGACAATGCTCCACAGTTGAGCATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

131

Amino Acids

13.98

Weight (kDa)

4.88

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	2 - 119	1.5e-12	Major Facilitator Superfamily
OATP	PF03137	58 - 122	1.2e-07	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT2G22730 AT5G65687
fragaria_vesca	FvH4_1g18801 FvH4_1g18801 FvH4_2g08420
malus_domestica	MD01G1046600.v1.1 MD16G1281900.v1.1
prunus_persica	Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1 Prupe.6G211400_v2.0.a1
pyrus_communis	pycom01g07260 pycom16g25150
rosa_chinensis	RchiOBHm_Chr2g0109661 RchiOBHm_Chr6g0275801 RchiOBHm_Chr6g0281511
rosa_laevigata	RLG00000002545 RLG00000004204 RLG00000007462 RLG00000017754 RLG00000028802
rosa_multiflora	Rmu_sc0000332.1_g000061
rosa_roxburghii	Rroxscaffold_1G00028320 Rroxscaffold_2G00087940 Rroxscaffold_2G00134050 Rroxscaffold_4G00322130
rosa_rugosa	Rorug01G0117300 Rorug02G0161700 Rorug07G0244800
rosa_samantha	Rh1BG113800 Rh2AG213900 Rh2BG162700 Rh2BG162900 Rh2BG224300 Rh2BG338500 Rh2CG216300 Rh2DG219500 Rh7BG405800
rosa_wichuraiana	Rw1G007880 Rw4G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	304
AciI	CCGC	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	19, 29
AluBI	AGCT	2 cut(s)	146, 236
AluI	AGCT	2 cut(s)	146, 236
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	2 cut(s)	26, 89
BfmI	CTRYAG	2 cut(s)	261, 321
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	245
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmI	GAATGC	2 cut(s)	89, 384
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	316
BssMI	GATC	1 cut(s)	265
BssNAI	GTATAC	1 cut(s)	305
Bst1107I	GTATAC	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	194, 285
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 284
BstNSI	RCATGY	2 cut(s)	196, 301
BstSFI	CTRYAG	2 cut(s)	261, 321
BstV1I	GCAGC	1 cut(s)	245
BstZ17I	GTATAC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	194, 285
Cfr13I	GGNCC	1 cut(s)	174
CviAII	CATG	6 cut(s)	70, 193, 254, 279, 298, 354
CviJI	RGCY	7 cut(s)	64, 74, 106, 146, 236, 283, 327
CviKI_1	RGCY	7 cut(s)	64, 74, 106, 146, 236, 283, 327
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DraI	TTTAAA	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	174
FaeI	CATG	6 cut(s)	73, 196, 257, 282, 301, 357
FatI	CATG	6 cut(s)	69, 192, 253, 278, 297, 353
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	74
Hin1II	CATG	6 cut(s)	73, 196, 257, 282, 301, 357
HinfI	GANTC	1 cut(s)	204
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	270, 364
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	4 cut(s)	89, 182, 233, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 284
Hsp92II	CATG	6 cut(s)	73, 196, 257, 282, 301, 357
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	2 cut(s)	241, 376
LpnPI	CCDG	7 cut(s)	132, 157, 182, 269, 273, 297, 349
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	224
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MluCI	AATT	2 cut(s)	14, 166
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	85, 96, 205, 357
MseI	TTAA	2 cut(s)	12, 165
MspA1I	CMGCKG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	89, 384
MwoI	GCNNNNNNNGC	2 cut(s)	95, 284
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	6 cut(s)	73, 196, 257, 282, 301, 357
NspI	RCATGY	2 cut(s)	196, 301
PaeI	GCATGC	1 cut(s)	196
PciI	ACATGT	1 cut(s)	297
PctI	GAATGC	2 cut(s)	89, 384
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	12, 165
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	213
SetI	ASST	2 cut(s)	148, 238
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	2 cut(s)	261, 321
SinI	GGWCC	1 cut(s)	174
SphI	GCATGC	1 cut(s)	196
Sse9I	AATT	2 cut(s)	14, 166
SsiI	CCGC	1 cut(s)	339
SspI	AATATT	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	378
TasI	AATT	2 cut(s)	14, 166
Tru1I	TTAA	2 cut(s)	12, 165
Tru9I	TTAA	2 cut(s)	12, 165
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	4 cut(s)	150, 211, 232, 342
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	174
XceI	RCATGY	2 cut(s)	196, 301
XmiI	GTMKAC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.