Rh2AG213900

sphingolipid transporter spinster homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001699
Physical Location & Seq
Reverse (-)
21789466 .. 21791292
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG213900.1

Sequence Viewer

Length: 561 bp
ATGAGTAATCCAGATCTGATGTTCGGAGGTATTACTATTCTCTGTGGAATTCTAGGAACTTTAACTGGAGGGCTCGTCCTTGATGCAGTGGGTGCTACAATTCACAATGCTTTTAAGCTTCTTGCTGGAGCGACAATGCTAGGTGCAATATTTTGCTTCAGTGCGTTTTGTGCAAAGAGCCTGCACATCTTTGTAGTTTTTTTCTCACTGGGGGAGCTACTTCTGTTTTCAACACAGGCTCCAGTAAACTATGTGTCTCTGCACTGCGTCAAACCAGGGCTAAGGCCATTGTCTATGGCTATCTCAACTCTTTCAATCCACATATTTGGTGATGTTCCTTCCTCGCCTCTTGTCGGAATCGTTCAGGATTATGTTCACAATTGGAGGGAAACGACTCTAATCTTTACCTCTGTCTACTTTGCTGCATCAGGAATATGGTTCATAGGGATCTTCCTTAATAGTGTGGACAAGTTTGAGGAAGATGATGAAGAAGAAGTCTCTACATTAGTTCAAGCCAACAAAGAACCATTGCTTGAAGAGCACCACTTAAGGAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 OATP

Protein Analysis

186

Amino Acids

20.28

Weight (kDa)

5.08

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OATP PF03137 56 - 123 2.7e-08 Organic Anion Transporter Polypeptide (OATP) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 414
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 353
AflII CTTAAG 1 cut(s) 547
AgsI TTSAA 4 cut(s) 231, 315, 512, 536
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 2 cut(s) 118, 217
AluI AGCT 2 cut(s) 118, 217
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 2 cut(s) 261, 502
AlwI GGATC 1 cut(s) 455
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 261, 502
BfaI CTAG 3 cut(s) 53, 140, 559
BfrI CTTAAG 1 cut(s) 547
BglII AGATCT 1 cut(s) 13
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 73, 434
BmuI ACTGGG 1 cut(s) 218
BpmI CTGGAG 3 cut(s) 87, 147, 225
Bpu10I CCTNAGC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 275
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 3 cut(s) 70, 213, 242
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 527
BseNI ACTGG 3 cut(s) 70, 213, 242
BseXI GCAGC 1 cut(s) 409
BsgI GTGCAG 2 cut(s) 167, 245
BshFI GGCC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 543
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 261, 502
BsnI GGCC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 75, 543
Bsp143I GATC 2 cut(s) 13, 447
BspANI GGCC 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 1 cut(s) 455
BspQI GCTCTTC 1 cut(s) 531
BspTI CTTAAG 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 527
BsrI ACTGG 3 cut(s) 70, 213, 242
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 2 cut(s) 13, 447
Bst2UI CCWGG 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 531
BstAFI CTTAAG 1 cut(s) 547
BstAPI GCANNNNNTGC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 281
BstKTI GATC 2 cut(s) 16, 450
BstMAI GTCTC 2 cut(s) 261, 502
BstMBI GATC 2 cut(s) 13, 447
BstMWI GCNNNNNNNGC 3 cut(s) 92, 170, 538
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 409
BstX2I RGATCY 2 cut(s) 13, 447
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 2 cut(s) 13, 447
BsuRI GGCC 1 cut(s) 286
BtsI GCAGTG 2 cut(s) 93, 262
BtsIMutI CAGTG 4 cut(s) 93, 166, 206, 262
Cac8I GCNNGC 1 cut(s) 182
CseI GACGC 1 cut(s) 256
CviJI RGCY 9 cut(s) 73, 118, 180, 217, 239, 280, 286, 299, 515
CviKI_1 RGCY 9 cut(s) 73, 118, 180, 217, 239, 280, 286, 299, 515
DdeI CTNAG 1 cut(s) 281
DpnI GATC 2 cut(s) 15, 449
DpnII GATC 2 cut(s) 13, 447
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 75
FaiI YATR 6 cut(s) 252, 296, 323, 372, 436, 443
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 1 cut(s) 423
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 3 cut(s) 53, 140, 559
GluI GCNGC 1 cut(s) 423
GsuI CTGGAG 3 cut(s) 87, 147, 225
HaeIII GGCC 1 cut(s) 286
HgaI GACGC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 2 cut(s) 357, 394
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 4 cut(s) 247, 376, 415, 466
Hpy188I TCNGA 3 cut(s) 18, 26, 356
Hpy188III TCNNGA 3 cut(s) 11, 365, 429
Hpy8I GTNNAC 4 cut(s) 247, 376, 415, 466
HpyAV CCTTC 2 cut(s) 348, 547
HpyCH4V TGCA 6 cut(s) 86, 146, 173, 184, 262, 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 170, 538
HpyF3I CTNAG 1 cut(s) 281
Kzo9I GATC 2 cut(s) 13, 447
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 3 cut(s) 128, 214, 244
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 2 cut(s) 73, 434
MaeI CTAG 3 cut(s) 53, 140, 559
MalI GATC 2 cut(s) 15, 449
MboI GATC 2 cut(s) 13, 447
MboII GAAGA 5 cut(s) 442, 491, 500, 503, 548
MfeI CAATTG 1 cut(s) 379
MflI RGATCY 2 cut(s) 13, 447
MhlI GDGCHC 2 cut(s) 75, 543
MluCI AATT 3 cut(s) 48, 99, 379
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 7 cut(s) 20, 62, 352, 357, 378, 418, 469
MseI TTAA 4 cut(s) 62, 114, 456, 548
MspCI CTTAAG 1 cut(s) 547
MspR9I CCNGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 379
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 92, 170, 538
NdeII GATC 2 cut(s) 13, 447
NlaIV GGNNCC 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 357
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 240
PsuI RGATCY 2 cut(s) 13, 447
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 4 cut(s) 62, 114, 456, 548
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 2 cut(s) 13, 447
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 2 cut(s) 75, 543
SetI ASST 5 cut(s) 31, 120, 145, 219, 410
SfaNI GCATC 2 cut(s) 73, 434
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
Sse9I AATT 3 cut(s) 48, 99, 379
SspI AATATT 1 cut(s) 150
SspMI CTAG 3 cut(s) 53, 140, 559
StyD4I CCNGG 1 cut(s) 274
TasI AATT 3 cut(s) 48, 99, 379
TfiI GAWTC 1 cut(s) 357
Tru1I TTAA 4 cut(s) 62, 114, 456, 548
Tru9I TTAA 4 cut(s) 62, 114, 456, 548
TscAI CASTG 4 cut(s) 93, 166, 213, 269
TseI GCWGC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 430, 501
TspRI CASTG 4 cut(s) 93, 166, 213, 269
Vha464I CTTAAG 1 cut(s) 547
XapI RAATTY 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 3 cut(s) 53, 140, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.