RLG00000017754

sphingolipid transporter spinster homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
20838259 .. 20844166
5908 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017754

Sequence Viewer

Length: 1584 bp
ATGGCACAACCACCACAATCACCGTCAAAATTCGCCCAATTCCCCAATCCTAATTCCCTTCCACCGATGACAAAGAACCCCAAGGCAGCAGTCTCAGCTCCAAAGCCTTCCTGGTTCTCCCCCGAAAGGTTGCTGTTAATCCTGTGTCTAGTTAACTTGATAAATTATATTGATCGAGGAGCAATAGCCAGCAATGGGGTCAATGGGAGTATTGGGATTTGCGATGAGAGCGGAATTTGCCATGCCGGTACCGGAATTCAGGGGGATTTTAAGTTGAACAACTTTCAAGATGGTGTTCTATCATCTGCATTCATGGTCGGGCTTCTCGTGGCCTCACCCATCTTTGCATCCTTGGCAAAGAGCCACAATCCTTTTAGGTTGATTGGAGTTGGGTTATCTATTTGGACATTTGCCACAGCTGGGTGTGGTAGTTCATTTAATTTCTGGTCCATTGCAATATGTCGCATGCTGGTTGGAGTCGGTGAGGCATCTTTCATAAGTCTTGCAGCTCCGTTCATTGATGACCATGCCCCTGCAGATCTGAAATCAGCATGGCTGGCAATGTTTTACATGTGTATACCAACTGGAGTCGCTATAGGCTATGTTTACGGCGGATTTGTGGGAGAGAGCATCAATTGGCGTTGTGCATTCTGGGGAGAGGCCCTTCTAATGCTTCCCTTTGCTGTGTTGGGTTTTGCGGTGAAACCATTGCAGCTGAAAGGTTTACCTCCTACTGAATCGACAGAGCTTTTGGAATCTATTGAAACTAGTCCTTTAATAGAAGAATCAGAGATCCCAAATATAAATGGTCGTGTGACAGTTGACTGCGATGAGACTTCTTGCTCATGCCCTACAACCAAATTTTTGGACCAATTTTCAAGCTTCTCAAAGGATTTGAAAGTACTTCTGCTTGATAAAGTTTACATTGTTAATGTATTAGGTTATGTGTCATACAACTTTGTCATTGGAACATACTCATACTGGGGGCCAAAGGCTGGTTATAACATTTACCATATGAGTAATCCGGATCTGATGTTCGGAGGTATTACTATTCTCTGTGGAATTCTAGGAACTTTAACTGGAGGGCTCGTCCTTGATGCAGTGGGTGCCACAATTCACAATGCTTTTAAGCTTCTTGCTGGAGCGACAATGCTAGGTGCAATATTTTGCTTCAGTGCGTTTTGTGCAAAGAGCTTGCACATCTTTGTAGTTTTTTTCTCACTGGGGGAGCTACTTCTGTTTTCAACACAGGCTCCAGTAAATTATGTGTCTCTGCACTGTGTCAAACCAGGGCTAAGGCCATTGTCTATGGCTATCTCAACTCTTTCAATCCACATATTTGGTGATGTTCCTTCCTCGCCTCTTGTCGGAATCGTTCAGGATTATGTTCACAACTGGAGGGAAACGACTCTAATCTTTACCTCTGTCTACTTTGTTGCATCAGGAATATGGTTCATAGGGATCTTCCTTAATAGTGTGGACAAGTTTGAGGAAGATGATGAAGAAGAAGTCTCTACATTAGTTCAAGCCAACAAAGAACCATTGCTTGAAGAGCACCACTTAAGGAAGGAGAGTTTACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

528

Amino Acids

57.16

Weight (kDa)

5.31

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 85 - 443 7.1e-31 Major Facilitator Superfamily
OATP PF03137 149 - 394 4.3e-16 Organic Anion Transporter Polypeptide (OATP) family
OATP PF03137 394 - 461 1.6e-07 Organic Anion Transporter Polypeptide (OATP) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1002
Acc65I GGTACC 1 cut(s) 248
AccB1I GGYRCC 2 cut(s) 248, 1106
AccB7I CCANNNNNTGG 1 cut(s) 995
AccBSI CCGCTC 1 cut(s) 231
AccI GTMKAC 2 cut(s) 577, 1428
AccIII TCCGGA 1 cut(s) 1024
AciI CCGC 3 cut(s) 231, 612, 698
AclWI GGATC 3 cut(s) 787, 1035, 1469
AcsI RAATTY 5 cut(s) 29, 234, 255, 860, 1062
AcuI CTGAAG 1 cut(s) 1156
AfaI GTAC 2 cut(s) 250, 903
AfiI CCNNNNNNNGG 5 cut(s) 126, 195, 420, 995, 1367
AflII CTTAAG 1 cut(s) 1561
AflIII ACRYGT 1 cut(s) 570
AgsI TTSAA 9 cut(s) 277, 287, 764, 879, 898, 1245, 1329, 1526, 1550
AhlI ACTAGT 1 cut(s) 767
AjnI CCWGG 2 cut(s) 110, 1288
AloI GAACNNNNNNTCC 2 cut(s) 1019, 1051
AluBI AGCT 9 cut(s) 98, 419, 509, 715, 748, 882, 1132, 1194, 1231
AluI AGCT 9 cut(s) 98, 419, 509, 715, 748, 882, 1132, 1194, 1231
Alw21I GWGCWC 1 cut(s) 1557
Alw26I GTCTC 4 cut(s) 97, 827, 1275, 1516
AlwI GGATC 3 cut(s) 787, 1035, 1469
Aor13HI TCCGGA 1 cut(s) 1024
AoxI GGCC 4 cut(s) 330, 660, 986, 1298
ApeKI GCWGC 3 cut(s) 86, 506, 712
ApoI RAATTY 5 cut(s) 29, 234, 255, 860, 1062
ArsI GACNNNNNNTTYG 2 cut(s) 733, 765
Asp718I GGTACC 1 cut(s) 248
AspS9I GGNCC 4 cut(s) 447, 661, 868, 986
AsuHPI GGTGA 5 cut(s) 12, 327, 494, 712, 1355
AvaII GGWCC 2 cut(s) 447, 868
BanI GGYRCC 2 cut(s) 248, 1106
BanII GRGCYC 1 cut(s) 1089
BauI CACGAG 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 1557
BbvI GCAGC 3 cut(s) 98, 518, 724
BccI CCATC 2 cut(s) 284, 347
BceAI ACGGC 1 cut(s) 625
BciT130I CCWGG 2 cut(s) 112, 1290
BcoDI GTCTC 4 cut(s) 97, 827, 1275, 1516
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 4 cut(s) 149, 768, 1067, 1154
BfmI CTRYAG 2 cut(s) 534, 594
BfrI CTTAAG 1 cut(s) 1561
BglII AGATCT 1 cut(s) 538
BisI GCNGC 3 cut(s) 87, 507, 713
BlsI GCNGC 3 cut(s) 88, 508, 714
BmcAI AGTACT 1 cut(s) 903
Bme1390I CCNGG 2 cut(s) 112, 1290
Bme18I GGWCC 2 cut(s) 447, 868
BmgT120I GGNCC 4 cut(s) 447, 661, 868, 986
BmiI GGNNCC 4 cut(s) 250, 987, 1108, 1254
BmrFI CCNGG 2 cut(s) 112, 1290
BmrI ACTGGG 2 cut(s) 991, 1232
BmsI GCATC 5 cut(s) 356, 497, 639, 1087, 1448
BmuI ACTGGG 2 cut(s) 991, 1232
BpmI CTGGAG 5 cut(s) 606, 1101, 1161, 1239, 1417
Bpu10I CCTNAGC 1 cut(s) 1295
BsaJI CCNNGG 3 cut(s) 81, 351, 1289
BsaWI WCCGGW 2 cut(s) 251, 1024
BsaXI ACNNNNNCTCC 4 cut(s) 1074, 1104, 1237, 1267
Bsc4I CCNNNNNNNGG 5 cut(s) 126, 195, 420, 995, 1367
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 6 cut(s) 589, 986, 1084, 1227, 1256, 1400
Bse3DI GCAATG 5 cut(s) 199, 450, 567, 707, 1541
BseAI TCCGGA 1 cut(s) 1024
BseBI CCWGG 2 cut(s) 112, 1290
BseDI CCNNGG 3 cut(s) 81, 351, 1289
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 5 cut(s) 126, 195, 420, 995, 1367
BseMI GCAATG 5 cut(s) 199, 450, 567, 707, 1541
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 6 cut(s) 589, 986, 1084, 1227, 1256, 1400
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 3 cut(s) 98, 518, 724
BseYI CCCAGC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 1259
BshFI GGCC 4 cut(s) 332, 662, 988, 1300
BshNI GGYRCC 2 cut(s) 248, 1106
BsiHKAI GWGCWC 1 cut(s) 1557
BsiSI CCGG 3 cut(s) 246, 252, 1025
BslI CCNNNNNNNGG 5 cut(s) 126, 195, 420, 995, 1367
BsmAI GTCTC 4 cut(s) 97, 827, 1275, 1516
BsmI GAATGC 2 cut(s) 308, 647
BsnI GGCC 4 cut(s) 332, 662, 988, 1300
Bsp1286I GDGCHC 2 cut(s) 1089, 1557
Bsp13I TCCGGA 1 cut(s) 1024
Bsp143I GATC 5 cut(s) 172, 538, 792, 1027, 1461
BspACI CCGC 3 cut(s) 231, 612, 698
BspANI GGCC 4 cut(s) 332, 662, 988, 1300
BspCNI CTCAG 1 cut(s) 107
BspEI TCCGGA 1 cut(s) 1024
BspLI GGNNCC 4 cut(s) 250, 987, 1108, 1254
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 3 cut(s) 787, 1035, 1469
BspQI GCTCTTC 1 cut(s) 1545
BspT107I GGYRCC 2 cut(s) 248, 1106
BspTI CTTAAG 1 cut(s) 1561
BsrBI CCGCTC 1 cut(s) 231
BsrDI GCAATG 5 cut(s) 199, 450, 567, 707, 1541
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 6 cut(s) 589, 986, 1084, 1227, 1256, 1400
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 3 cut(s) 81, 351, 1289
BssMI GATC 5 cut(s) 172, 538, 792, 1027, 1461
BssNAI GTATAC 1 cut(s) 578
BssSI CACGAG 1 cut(s) 326
BssT1I CCWWGG 2 cut(s) 81, 351
Bst1107I GTATAC 1 cut(s) 578
Bst2BI CACGAG 1 cut(s) 326
Bst2UI CCWGG 2 cut(s) 112, 1290
Bst4CI ACNGT 3 cut(s) 24, 820, 1280
Bst6I CTCTTC 1 cut(s) 1545
BstAFI CTTAAG 1 cut(s) 1561
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstC8I GCNNGC 4 cut(s) 190, 467, 558, 1196
BstDEI CTNAG 2 cut(s) 94, 1295
BstF5I GGATG 1 cut(s) 347
BstKTI GATC 5 cut(s) 175, 541, 795, 1030, 1464
BstMAI GTCTC 4 cut(s) 97, 827, 1275, 1516
BstMBI GATC 5 cut(s) 172, 538, 792, 1027, 1461
BstMWI GCNNNNNNNGC 8 cut(s) 95, 228, 237, 353, 557, 1106, 1184, 1552
BstNI CCWGG 2 cut(s) 112, 1290
BstNSI RCATGY 2 cut(s) 469, 574
BstSCI CCNGG 2 cut(s) 110, 1288
BstSFI CTRYAG 2 cut(s) 534, 594
BstV1I GCAGC 3 cut(s) 98, 518, 724
BstX2I RGATCY 4 cut(s) 538, 792, 1027, 1461
BstXI CCANNNNNNTGG 2 cut(s) 865, 1340
BstYI RGATCY 4 cut(s) 538, 792, 1027, 1461
BstZ17I GTATAC 1 cut(s) 578
BsuRI GGCC 4 cut(s) 332, 662, 988, 1300
BtgZI GCGATG 2 cut(s) 237, 843
BtsCI GGATG 1 cut(s) 347
BtsI GCAGTG 1 cut(s) 1107
BtsIMutI CAGTG 4 cut(s) 1107, 1180, 1220, 1276
Cac8I GCNNGC 4 cut(s) 190, 467, 558, 1196
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 4 cut(s) 447, 661, 868, 986
Csp6I GTAC 2 cut(s) 249, 902
CviAII CATG 7 cut(s) 242, 313, 466, 527, 552, 571, 846
CviQI GTAC 2 cut(s) 249, 902
DdeI CTNAG 2 cut(s) 94, 1295
DpnI GATC 5 cut(s) 174, 540, 794, 1029, 1463
DpnII GATC 5 cut(s) 172, 538, 792, 1027, 1461
Eam1104I CTCTTC 1 cut(s) 1545
EarI CTCTTC 1 cut(s) 1545
EciI GGCGGA 1 cut(s) 627
Eco130I CCWWGG 2 cut(s) 81, 351
Eco24I GRGCYC 1 cut(s) 1089
Eco47I GGWCC 2 cut(s) 447, 868
Eco57I CTGAAG 1 cut(s) 1156
EcoO109I RGGNCCY 1 cut(s) 661
EcoRI GAATTC 2 cut(s) 255, 1062
EcoRII CCWGG 2 cut(s) 110, 1288
EcoT14I CCWWGG 2 cut(s) 81, 351
EcoT38I GRGCYC 1 cut(s) 1089
ErhI CCWWGG 2 cut(s) 81, 351
FaeI CATG 7 cut(s) 245, 316, 469, 530, 555, 574, 849
FatI CATG 7 cut(s) 241, 312, 465, 526, 551, 570, 845
FauNDI CATATG 1 cut(s) 1014
FblI GTMKAC 2 cut(s) 577, 1428
Fnu4HI GCNGC 3 cut(s) 87, 507, 713
FokI GGATG 1 cut(s) 334
FriOI GRGCYC 1 cut(s) 1089
Fsp4HI GCNGC 3 cut(s) 87, 507, 713
FspBI CTAG 4 cut(s) 149, 768, 1067, 1154
GluI GCNGC 3 cut(s) 87, 507, 713
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 5 cut(s) 606, 1101, 1161, 1239, 1417
HaeIII GGCC 4 cut(s) 332, 662, 988, 1300
HapII CCGG 3 cut(s) 246, 252, 1025
Hin1II CATG 7 cut(s) 245, 316, 469, 530, 555, 574, 849
HincII GTYRAC 2 cut(s) 154, 823
HindII GTYRAC 2 cut(s) 154, 823
HindIII AAGCTT 2 cut(s) 880, 1130
HinfI GANTC 7 cut(s) 477, 588, 737, 755, 785, 1371, 1408
HpaI GTTAAC 1 cut(s) 154
HpaII CCGG 3 cut(s) 246, 252, 1025
HphI GGTGA 5 cut(s) 12, 327, 494, 712, 1355
Hpy188I TCNGA 5 cut(s) 543, 790, 1032, 1040, 1370
Hpy188III TCNNGA 4 cut(s) 287, 1025, 1379, 1443
HpyAV CCTTC 5 cut(s) 68, 117, 674, 1362, 1561
HpyCH4III ACNGT 3 cut(s) 24, 820, 1280
HpyCH4IV ACGT 1 cut(s) 1579
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 228, 237, 353, 557, 1106, 1184, 1552
HpyF3I CTNAG 2 cut(s) 94, 1295
HpySE526I ACGT 1 cut(s) 1579
Hsp92II CATG 7 cut(s) 245, 316, 469, 530, 555, 574, 849
Kpn2I TCCGGA 1 cut(s) 1024
KpnI GGTACC 1 cut(s) 252
KspAI GTTAAC 1 cut(s) 154
Kzo9I GATC 5 cut(s) 172, 538, 792, 1027, 1461
LguI GCTCTTC 1 cut(s) 1545
LmnI GCTCC 6 cut(s) 103, 179, 514, 1142, 1228, 1258
Lsp1109I GCAGC 3 cut(s) 98, 518, 724
LweI GCATC 5 cut(s) 356, 497, 639, 1087, 1448
MaeI CTAG 4 cut(s) 149, 768, 1067, 1154
MaeII ACGT 1 cut(s) 1579
MaeIII GTNAC 1 cut(s) 814
MalI GATC 5 cut(s) 174, 540, 794, 1029, 1463
MbiI CCGCTC 1 cut(s) 231
MboI GATC 5 cut(s) 172, 538, 792, 1027, 1461
MboII GAAGA 6 cut(s) 794, 1456, 1505, 1514, 1517, 1562
MfeI CAATTG 1 cut(s) 634
MflI RGATCY 4 cut(s) 538, 792, 1027, 1461
MhlI GDGCHC 2 cut(s) 1089, 1557
MlyI GAGTC 3 cut(s) 486, 597, 1402
MmeI TCCRAC 2 cut(s) 454, 1348
MroI TCCGGA 1 cut(s) 1024
MspA1I CMGCKG 2 cut(s) 419, 715
MspCI CTTAAG 1 cut(s) 1561
MspI CCGG 3 cut(s) 246, 252, 1025
MspR9I CCNGG 2 cut(s) 112, 1290
MunI CAATTG 1 cut(s) 634
Mva1269I GAATGC 2 cut(s) 308, 647
MvaI CCWGG 2 cut(s) 112, 1290
MwoI GCNNNNNNNGC 8 cut(s) 95, 228, 237, 353, 557, 1106, 1184, 1552
NdeI CATATG 1 cut(s) 1014
NdeII GATC 5 cut(s) 172, 538, 792, 1027, 1461
NlaIII CATG 7 cut(s) 245, 316, 469, 530, 555, 574, 849
NlaIV GGNNCC 4 cut(s) 250, 987, 1108, 1254
NmuCI GTSAC 1 cut(s) 814
NspI RCATGY 2 cut(s) 469, 574
PaeI GCATGC 1 cut(s) 469
PciI ACATGT 1 cut(s) 570
PciSI GCTCTTC 1 cut(s) 1545
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PctI GAATGC 2 cut(s) 308, 647
PfeI GAWTC 4 cut(s) 737, 755, 785, 1371
PflMI CCANNNNNTGG 1 cut(s) 995
PkrI GCNGC 3 cut(s) 88, 508, 714
PleI GAGTC 3 cut(s) 485, 596, 1402
PpsI GAGTC 3 cut(s) 485, 596, 1402
PscI ACATGT 1 cut(s) 570
PsiI TTATAA 1 cut(s) 1002
Psp6I CCWGG 2 cut(s) 110, 1288
PspFI CCCAGC 1 cut(s) 419
PspGI CCWGG 2 cut(s) 110, 1288
PspN4I GGNNCC 4 cut(s) 250, 987, 1108, 1254
PspPI GGNCC 4 cut(s) 447, 661, 868, 986
PstI CTGCAG 1 cut(s) 538
PsuI RGATCY 4 cut(s) 538, 792, 1027, 1461
PvuII CAGCTG 2 cut(s) 419, 715
RsaI GTAC 2 cut(s) 250, 903
RsaNI GTAC 2 cut(s) 249, 902
SapI GCTCTTC 1 cut(s) 1545
SatI GCNGC 3 cut(s) 87, 507, 713
Sau3AI GATC 5 cut(s) 172, 538, 792, 1027, 1461
Sau96I GGNCC 4 cut(s) 447, 661, 868, 986
ScaI AGTACT 1 cut(s) 903
SchI GAGTC 3 cut(s) 486, 597, 1402
ScrFI CCNGG 2 cut(s) 112, 1290
SduI GDGCHC 2 cut(s) 1089, 1557
SfaNI GCATC 5 cut(s) 356, 497, 639, 1087, 1448
SfcI CTRYAG 2 cut(s) 534, 594
SinI GGWCC 2 cut(s) 447, 868
SmlI CTYRAG 1 cut(s) 1561
SmoI CTYRAG 1 cut(s) 1561
SpeI ACTAGT 1 cut(s) 767
SphI GCATGC 1 cut(s) 469
SsiI CCGC 3 cut(s) 231, 612, 698
SspI AATATT 1 cut(s) 1164
SspMI CTAG 4 cut(s) 149, 768, 1067, 1154
StyD4I CCNGG 2 cut(s) 110, 1288
StyI CCWWGG 2 cut(s) 81, 351
TaaI ACNGT 3 cut(s) 24, 820, 1280
TaiI ACGT 1 cut(s) 1582
TaqI TCGA 2 cut(s) 175, 740
TatI WGTACW 1 cut(s) 901
TfiI GAWTC 4 cut(s) 737, 755, 785, 1371
TscAI CASTG 4 cut(s) 1107, 1180, 1227, 1283
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 3 cut(s) 86, 506, 712
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 6 cut(s) 301, 423, 484, 505, 1444, 1515
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 4 cut(s) 1107, 1180, 1227, 1283
Van91I CCANNNNNTGG 1 cut(s) 995
Vha464I CTTAAG 1 cut(s) 1561
VpaK11BI GGWCC 2 cut(s) 447, 868
XapI RAATTY 5 cut(s) 29, 234, 255, 860, 1062
XceI RCATGY 2 cut(s) 469, 574
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
XmiI GTMKAC 2 cut(s) 577, 1428
XspI CTAG 4 cut(s) 149, 768, 1067, 1154
ZrmI AGTACT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.