Rroxscaffold_4G00322130

sphingolipid transporter spinster homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001699
Physical Location & Seq
Reverse (-)
52188053 .. 52191943
3891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322130.1

Sequence Viewer

Length: 204 bp
ATGCTGGTTGGAGTCGGTGAGGCATCTTTCATAAGTCTTGCAGCTCTGTTCATTGATGACCATGCCCCTGCAGATCAGAAATCAGCATGGCTGGCAATATTTTACATTTGTATACCGACTCGAGTTGCTATAGGCTATGTTCTGGCGAATTTGTGGGAGAGAGCATCAATTGGCGTTGAGCATTCTGGGGAGAGGCCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 OATP

Protein Analysis

67

Amino Acids

7.31

Weight (kDa)

5.01

Isoelectric Point (pI)

22.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OATP PF03137 1 - 55 7.9e-06 Organic Anion Transporter Polypeptide (OATP) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 112
AcsI RAATTY 1 cut(s) 148
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 120
BbvI GCAGC 1 cut(s) 53
BfmI CTRYAG 2 cut(s) 69, 129
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 195
BmsI GCATC 2 cut(s) 32, 173
BseXI GCAGC 1 cut(s) 53
BshFI GGCC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 120
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 120
Bsp143I GATC 1 cut(s) 73
BspANI GGCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 73
BssMI GATC 1 cut(s) 73
BssNAI GTATAC 1 cut(s) 113
Bst1107I GTATAC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSFI CTRYAG 2 cut(s) 69, 129
BstV1I GCAGC 1 cut(s) 53
BstZ17I GTATAC 1 cut(s) 113
BsuRI GGCC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 195
CviAII CATG 2 cut(s) 62, 87
CviJI RGCY 4 cut(s) 44, 91, 135, 196
CviKI_1 RGCY 4 cut(s) 44, 91, 135, 196
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 195
FaeI CATG 2 cut(s) 65, 90
FaiI YATR 6 cut(s) 32, 63, 88, 113, 131, 138
FatI CATG 2 cut(s) 61, 86
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 196
Hin1II CATG 2 cut(s) 65, 90
HinfI GANTC 2 cut(s) 12, 118
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 78
Hpy8I GTNNAC 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 41, 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Hsp92II CATG 2 cut(s) 65, 90
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 77, 81, 128, 171
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 2 cut(s) 32, 173
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MfeI CAATTG 1 cut(s) 168
MluCI AATT 2 cut(s) 148, 168
MlyI GAGTC 2 cut(s) 21, 112
MnlI CCTC 2 cut(s) 13, 186
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 65, 90
PaeR7I CTCGAG 1 cut(s) 120
PctI GAATGC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 2 cut(s) 20, 112
PpsI GAGTC 2 cut(s) 20, 112
PspPI GGNCC 1 cut(s) 195
PspXI VCTCGAGB 1 cut(s) 120
PstI CTGCAG 1 cut(s) 73
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 2 cut(s) 21, 112
SetI ASST 1 cut(s) 46
SfaNI GCATC 2 cut(s) 32, 173
SfcI CTRYAG 2 cut(s) 69, 129
Sfr274I CTCGAG 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 2 cut(s) 148, 168
SspI AATATT 1 cut(s) 99
TaqI TCGA 1 cut(s) 121
TasI AATT 2 cut(s) 148, 168
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 19, 40
XapI RAATTY 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.