FvH4_1g19192

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004523
Physical Location & Seq
Reverse (-)
11401479 .. 11402649
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19192.t1

Sequence Viewer

Length: 702 bp
ATGACTCTTACTGAATTTGTGGATCAGTATGACAAACAAGCAGAACAAATGCGTTCAAGTGAATTGGAAAAGACTTCTCGATGCAATAATGGAATACCTTCGAGGGCTGCAAAAAGTAGTGGAATTAAGAAGCAAGCTGGTATGGTCTACACTCGAAAAATTTACAATATATTTGAGTTTGAATTTATTGCTAGCTTGGCAGTGAAGATTGAGGAAGTTGGAAATGATGGAACACTGCAAAAATTTGAACTTAATGAGGAGGGCCATAAAAGAGTGTACATTGTCCAATTCAATCATTCGAATATGACCATCTGTTGTAGTTGTCAAATGTATGAATCTAACGGTTGGTTATGTCGTCATGCTTTGAGGGTGCTAAATGTGAAAAATGTTACTCAAATTCCAGCACAATATATTCTGAAGAGATGGACAAAAGATACAAAGAAAGGAGTAGAGGAAAACAATGTAGAACTACAGGTCAAGGAGAAATCCACTGTGACATTGCGCAGGAATTCTTTGATGCGAAAAGCTTATGGTATAATTAGTAAGGGAGCAGAGACAACTAGTGGTAGTGACATTGTATTGCAAAAATTGAAAGAAGCACAAGACTTAATCAAAAAGAACATGCAGAAGTTGTCTATTGGGGGAGATGTCAATGAACGAATTAATGAAGCAATTTTCAGCTATGAGCTTTCCGACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

234

Amino Acids

26.64

Weight (kDa)

8.96

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 100 - 129 1.2e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 503
AccI GTMKAC 1 cut(s) 147
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 6 cut(s) 14, 159, 182, 242, 396, 508
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 5 cut(s) 57, 182, 248, 292, 592
AhlI ACTAGT 1 cut(s) 560
AluBI AGCT 5 cut(s) 137, 195, 527, 681, 688
AluI AGCT 5 cut(s) 137, 195, 527, 681, 688
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 1 cut(s) 30
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 6 cut(s) 14, 159, 182, 242, 396, 508
AseI ATTAAT 1 cut(s) 663
Asp700I GAANNNNTTC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 1 cut(s) 262
AsuII TTCGAA 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 221, 317, 417
BcoDI GTCTC 1 cut(s) 548
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 2 cut(s) 192, 561
BfmI CTRYAG 1 cut(s) 470
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 262
BmsI GCATC 2 cut(s) 71, 507
BmtI GCTAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 497
BseMI GCAATG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 548
BsnI GGCC 1 cut(s) 264
Bsp119I TTCGAA 1 cut(s) 299
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 1 cut(s) 22
BspANI GGCC 1 cut(s) 264
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 497
BsrGI TGTACA 1 cut(s) 276
BssMI GATC 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 344, 493
Bst6I CTCTTC 1 cut(s) 413
BstAUI TGTACA 1 cut(s) 276
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 135, 193
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 625
BstSFI CTRYAG 1 cut(s) 470
BstV1I GCAGC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 264
BtsI GCAGTG 2 cut(s) 207, 233
BtsIMutI CAGTG 3 cut(s) 207, 233, 489
Cac8I GCNNGC 2 cut(s) 135, 193
CfoI GCGC 1 cut(s) 504
Cfr13I GGNCC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 277
CviAII CATG 2 cut(s) 359, 622
CviJI RGCY 7 cut(s) 107, 137, 195, 264, 527, 681, 688
CviKI_1 RGCY 7 cut(s) 107, 137, 195, 264, 527, 681, 688
CviQI GTAC 1 cut(s) 277
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 508
FaeI CATG 2 cut(s) 362, 625
FatI CATG 2 cut(s) 358, 621
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 2 cut(s) 192, 561
FspI TGCGCA 1 cut(s) 503
GlaI GCGC 1 cut(s) 503
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 264
HhaI GCGC 1 cut(s) 504
Hin1II CATG 2 cut(s) 362, 625
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 2 cut(s) 4, 335
Hpy166II GTNNAC 2 cut(s) 148, 277
Hpy188I TCNGA 2 cut(s) 417, 694
Hpy188III TCNNGA 1 cut(s) 78
Hpy8I GTNNAC 2 cut(s) 148, 277
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 2 cut(s) 344, 493
HpyCH4V TGCA 5 cut(s) 84, 110, 238, 583, 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 362, 625
HspAI GCGC 1 cut(s) 502
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 548
LpnPI CCDG 4 cut(s) 123, 414, 458, 490
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 71, 507
MaeI CTAG 2 cut(s) 192, 561
MaeIII GTNAC 3 cut(s) 388, 493, 569
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 2 cut(s) 217, 430
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 6 cut(s) 96, 205, 250, 253, 360, 445
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 4 cut(s) 126, 252, 608, 663
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 1 cut(s) 22
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 362, 625
NmuCI GTSAC 2 cut(s) 493, 569
NsbI TGCGCA 1 cut(s) 503
NspI RCATGY 1 cut(s) 625
NspV TTCGAA 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 663
PspPI GGNCC 1 cut(s) 262
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SaqAI TTAA 4 cut(s) 126, 252, 608, 663
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 262
SetI ASST 7 cut(s) 100, 139, 197, 477, 529, 683, 690
SfaNI GCATC 2 cut(s) 71, 507
SfcI CTRYAG 1 cut(s) 470
SfuI TTCGAA 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 560
SspMI CTAG 2 cut(s) 192, 561
TaaI ACNGT 2 cut(s) 344, 493
TaqI TCGA 4 cut(s) 79, 101, 154, 299
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 4 cut(s) 126, 252, 608, 663
Tru9I TTAA 4 cut(s) 126, 252, 608, 663
TscAI CASTG 3 cut(s) 207, 240, 496
TseFI GTSAC 2 cut(s) 493, 569
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 2 cut(s) 493, 569
TspDTI ATGAA 3 cut(s) 348, 669, 681
TspRI CASTG 3 cut(s) 207, 240, 496
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 6 cut(s) 14, 159, 182, 242, 396, 508
XceI RCATGY 1 cut(s) 625
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 2 cut(s) 192, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.