Rroxscaffold_1G00027570

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004523
Physical Location & Seq
Forward (+)
34876430 .. 34876993
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00027570.1

Sequence Viewer

Length: 564 bp
ATGGAGGAAGTTGGAAGTGATGGAACATTGCAGACATTTGAACTTAATGAGGAGGGTCATAAAAGAGTGTACATTGTTCAATTCAATTCTTCAAATCTGACCATCTCTTGTAGTTGTCGGATGTATGAATCTATGGGCTGGTTATGCCGTCATGCTTTGAGGGTGTTAAATGTGAAAAATATTACTCAAATACCAACACAGTATATACAAAAGAGATGGACAAAAGATGCAAAGAAAGGAGTAGAGGCAAATAGTGTACCACTACAGGTCAAGGAGAAATCAACTGTGACATTGCGTAGGAATACTTTAATGCGAAAAGCTTACGGTATAATTAGTAAGGGAGTGGAGACAACTAGTGGTAGTGATATCGCGATGCAGAAATTGATAGAAGCAGAAGAGCTAATTGAGAAGAATATGAAGAAGTTATCAATTATGGGAGATGTCAATGAAAAAATCAATGAGGTTCCTAGTGTTAATACTTCGGTGGCAGTGCTAATAAAAATGAAACCTTATTTGACGAAACACCAATACTCAATCCAGCAGGTGTGTGGCCAAAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

187

Amino Acids

21.19

Weight (kDa)

9.32

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 26 - 60 5.2e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
Acc36I ACCTGC 1 cut(s) 532
AccII CGCG 1 cut(s) 371
AcoI YGGCCR 1 cut(s) 550
AfaI GTAC 2 cut(s) 71, 258
AgsI TTSAA 4 cut(s) 41, 80, 85, 93
AhlI ACTAGT 1 cut(s) 353
AluBI AGCT 2 cut(s) 320, 400
AluI AGCT 2 cut(s) 320, 400
Alw26I GTCTC 1 cut(s) 341
AoxI GGCC 1 cut(s) 550
BalI TGGCCA 1 cut(s) 552
BccI CCATC 3 cut(s) 14, 110, 210
BceAI ACGGC 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 341
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 2 cut(s) 354, 468
BfmI CTRYAG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 532
BmiI GGNNCC 1 cut(s) 465
BmsI GCATC 2 cut(s) 217, 363
Bse3DI GCAATG 2 cut(s) 26, 290
BseGI GGATG 1 cut(s) 126
BseMI GCAATG 2 cut(s) 26, 290
BseRI GAGGAG 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 1 cut(s) 552
BsmAI GTCTC 1 cut(s) 341
BsnI GGCC 1 cut(s) 552
Bsp1407I TGTACA 1 cut(s) 69
Bsp68I TCGCGA 1 cut(s) 371
BspANI GGCC 1 cut(s) 552
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 1 cut(s) 465
BspMI ACCTGC 1 cut(s) 532
BspQI GCTCTTC 1 cut(s) 390
BsrDI GCAATG 2 cut(s) 26, 290
BsrGI TGTACA 1 cut(s) 69
Bst4CI ACNGT 3 cut(s) 201, 286, 326
Bst6I CTCTTC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 69
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 371
BstMAI GTCTC 1 cut(s) 341
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 263
BstUI CGCG 1 cut(s) 371
BsuRI GGCC 1 cut(s) 552
BtgZI GCGATG 1 cut(s) 386
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 495
BtuMI TCGCGA 1 cut(s) 371
BveI ACCTGC 1 cut(s) 532
Csp6I GTAC 2 cut(s) 70, 257
CviAII CATG 2 cut(s) 152, 561
CviJI RGCY 4 cut(s) 138, 320, 400, 552
CviKI_1 RGCY 4 cut(s) 138, 320, 400, 552
CviQI GTAC 2 cut(s) 70, 257
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco32I GATATC 1 cut(s) 367
EcoRV GATATC 1 cut(s) 367
FaeI CATG 2 cut(s) 155, 564
FatI CATG 2 cut(s) 151, 560
FokI GGATG 1 cut(s) 133
FspBI CTAG 2 cut(s) 354, 468
HaeIII GGCC 1 cut(s) 552
Hin1II CATG 2 cut(s) 155, 564
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 70, 257
Hpy188I TCNGA 2 cut(s) 99, 120
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 2 cut(s) 70, 257
HpyCH4III ACNGT 3 cut(s) 201, 286, 326
HpyCH4V TGCA 3 cut(s) 31, 230, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 155, 564
LguI GCTCTTC 1 cut(s) 390
LpnPI CCDG 4 cut(s) 124, 251, 527, 551
LweI GCATC 2 cut(s) 217, 363
MaeI CTAG 2 cut(s) 354, 468
MaeIII GTNAC 1 cut(s) 286
MboII GAAGA 4 cut(s) 81, 407, 421, 430
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 6 cut(s) 80, 85, 330, 380, 402, 429
MluNI TGGCCA 1 cut(s) 552
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 5 cut(s) 43, 46, 153, 238, 454
Mox20I TGGCCA 1 cut(s) 552
MscI TGGCCA 1 cut(s) 552
MseI TTAA 4 cut(s) 45, 167, 308, 474
Msp20I TGGCCA 1 cut(s) 552
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 144
NlaIII CATG 2 cut(s) 155, 564
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 1 cut(s) 286
NruI TCGCGA 1 cut(s) 371
PaqCI CACCTGC 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 465
RruI TCGCGA 1 cut(s) 371
RsaI GTAC 2 cut(s) 71, 258
RsaNI GTAC 2 cut(s) 70, 257
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 4 cut(s) 45, 167, 308, 474
SetI ASST 6 cut(s) 270, 322, 402, 465, 511, 546
SfaNI GCATC 2 cut(s) 217, 363
SfcI CTRYAG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 353
Sse9I AATT 6 cut(s) 80, 85, 330, 380, 402, 429
SspI AATATT 1 cut(s) 181
SspMI CTAG 2 cut(s) 354, 468
TaaI ACNGT 3 cut(s) 201, 286, 326
TasI AATT 6 cut(s) 80, 85, 330, 380, 402, 429
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 4 cut(s) 45, 167, 308, 474
Tru9I TTAA 4 cut(s) 45, 167, 308, 474
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 4 cut(s) 141, 431, 462, 518
TspRI CASTG 1 cut(s) 495
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XspI CTAG 2 cut(s) 354, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.